Roy R Chaudhuri

Roy R Chaudhuri

UNVERIFIED PROFILE

Are you Roy R Chaudhuri?   Register this Author

Register author
Roy R Chaudhuri

Roy R Chaudhuri

Publications by authors named "Roy R Chaudhuri"

Are you Roy R Chaudhuri?   Register this Author

59Publications

1020Reads

34Profile Views

Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Authors:
Lucy A Weinert Roy R Chaudhuri Jinhong Wang Sarah E Peters Jukka Corander Thibaut Jombart Abiyad Baig Kate J Howell Minna Vehkala Niko Välimäki David Harris Tran Thi Bich Chieu Nguyen Van Vinh Chau James Campbell Constance Schultsz Julian Parkhill Stephen D Bentley Paul R Langford Andrew N Rycroft Brendan W Wren Jeremy Farrar Stephen Baker Ngo Thi Hoa Matthew T G Holden Alexander W Tucker Duncan J Maskell

Nat Commun 2019 Nov 22;10(1):5326. Epub 2019 Nov 22.

Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/s41467-019-13138-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874593PMC
November 2019

The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid.

Authors:
Rocío Canals Roy R Chaudhuri Rebecca E Steiner Siân V Owen Natalia Quinones-Olvera Melita A Gordon Michael Baym Michael Ibba Jay C D Hinton

PLoS Pathog 2019 09 27;15(9):e1007948. Epub 2019 Sep 27.

Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.ppat.1007948DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6785131PMC
September 2019

Draft Whole-Genome Sequences of 10 Strains from Clinical and Environmental Sources.

Authors:
Katie Gray Luke R Green Roy R Chaudhuri Jonathan G Shaw

Microbiol Resour Announc 2019 Jul 25;8(30). Epub 2019 Jul 25.

Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, United Kingdom

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/MRA.00170-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6658677PMC
July 2019

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

Authors:
Calum A Pattrick Joseph P Webb Jeffrey Green Roy R Chaudhuri Mark O Collins David J Kelly

mSystems 2019 Jun 11;4(4). Epub 2019 Jun 11.

Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/mSystems.00163-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561319PMC
June 2019

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle.

Authors:
Prerna Vohra Roy R Chaudhuri Matthew Mayho Christina Vrettou Cosmin Chintoan-Uta Nicholas R Thomson Jayne C Hope John Hopkins Mark P Stevens

BMC Genomics 2019 Jan 8;20(1):20. Epub 2019 Jan 8.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh, EH25 9RG, UK.

View Article

Download full-text PDF

 Source
https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
Publisher Site
http://dx.doi.org/10.1186/s12864-018-5319-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6325888PMC
January 2019

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.

Authors:
Rocío Canals Disa L Hammarlöf Carsten Kröger Siân V Owen Wai Yee Fong Lizeth Lacharme-Lora Xiaojun Zhu Nicolas Wenner Sarah E Carden Jared Honeycutt Denise M Monack Robert A Kingsley Philip Brownridge Roy R Chaudhuri Will P M Rowe Alexander V Predeus Karsten Hokamp Melita A Gordon Jay C D Hinton

PLoS Biol 2019 01 15;17(1):e3000059. Epub 2019 Jan 15.

Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.pbio.3000059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6333337PMC
January 2019

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

Authors:
Olusegun Oshota Max Conway Maria Fookes Fernanda Schreiber Roy R Chaudhuri Lu Yu Fiona J E Morgan Simon Clare Jyoti Choudhary Nicholas R Thomson Pietro Lio Duncan J Maskell Pietro Mastroeni Andrew J Grant

PLoS One 2017 10;12(8):e0181365. Epub 2017 Aug 10.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0181365PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5552096PMC
October 2017

"Pathotyping" Multiplex PCR Assay for Haemophilus parasuis: a Tool for Prediction of Virulence.

Authors:
Kate J Howell Lucy A Weinert Sarah E Peters Jinhong Wang Juan Hernandez-Garcia Roy R Chaudhuri Shi-Lu Luan Øystein Angen Virginia Aragon Susanna M Williamson Paul R Langford Andrew N Rycroft Brendan W Wren Duncan J Maskell Alexander W Tucker

J Clin Microbiol 2017 09 14;55(9):2617-2628. Epub 2017 Jun 14.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JCM.02464-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648699PMC
September 2017

Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in .

Authors:
Janine T Bossé Yanwen Li Jon Rogers Roberto Fernandez Crespo Yinghui Li Roy R Chaudhuri Matthew T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Front Microbiol 2017 6;8:311. Epub 2017 Mar 6.

Section of Paediatrics, Department of Medicine, Imperial College London London, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.3389/fmicb.2017.00311DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5337627PMC
March 2017

Sequencing a piece of history: complete genome sequence of the original strain.

Authors:
Karl A Dunne Roy R Chaudhuri Amanda E Rossiter Irene Beriotto Douglas F Browning Derrick Squire Adam F Cunningham Jeffrey A Cole Nicholas Loman Ian R Henderson

Microb Genom 2017 03 23;3(3):mgen000106. Epub 2017 Mar 23.

1​Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1099/mgen.0.000106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382810PMC
March 2017

Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States.

Authors:
Graham P Stafford Roy R Chaudhuri Violet Haraszthy Valentin Friedrich Christina Schäffer Angela Ruscitto Kiyonobu Honma Ashu Sharma

Genome Announc 2016 Dec 1;4(6). Epub 2016 Dec 1.

Department of Oral Biology, University at Buffalo, SUNY, Buffalo, New York, USA

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/genomeA.01286-16DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5137401PMC
December 2016

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus.

Authors:
Sébastien Wielgoss Xavier Didelot Roy R Chaudhuri Xuan Liu Gareth D Weedall Gregory J Velicer Michiel Vos

ISME J 2016 10 5;10(10):2468-77. Epub 2016 Apr 5.

European Centre for Environmental and Human Health, Medical School, University of Exeter, Penryn, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ismej.2016.34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030687PMC
October 2016

ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae.

Authors:
Janine T Bossé Yanwen Li Roberto Fernandez Crespo Roy R Chaudhuri Jon Rogers Matthew T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Front Microbiol 2016 15;7:810. Epub 2016 Jun 15.

Section of Paediatrics, Department of Medicine, Imperial College London London, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.3389/fmicb.2016.00810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908127PMC
August 2016

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina.

Authors:
Guangyu E Chen Andrew Hitchcock Philip J Jackson Roy R Chaudhuri Mark J Dickman C Neil Hunter Daniel P Canniffe

J Bacteriol 2016 May 14;198(9):1393-400. Epub 2016 Apr 14.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.00925-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836224PMC
May 2016

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91-/- phox Mice.

Authors:
Andrew J Grant Olusegun Oshota Roy R Chaudhuri Matthew Mayho Sarah E Peters Simon Clare Duncan J Maskell Pietro Mastroeni

Infect Immun 2016 Apr 24;84(4):989-997. Epub 2016 Mar 24.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/IAI.01423-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4807482PMC
April 2016

Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae.

Authors:
Janine T Bossé Roy R Chaudhuri Yanwen Li Leon G Leanse Roberto Fernandez Crespo Paul Coupland Matthew T G Holden Denise M Bazzolli Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Genome Announc 2016 Jan 28;4(1). Epub 2016 Jan 28.

Department of Medicine, Section of Paediatrics, Imperial College London, London, United Kingdom

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/genomeA.01667-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4732349PMC
January 2016

Development of a Multiplex PCR Assay for Rapid Molecular Serotyping of Haemophilus parasuis.

Authors:
Kate J Howell Sarah E Peters Jinhong Wang Juan Hernandez-Garcia Lucy A Weinert Shi-Lu Luan Roy R Chaudhuri Øystein Angen Virginia Aragon Susanna M Williamson Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Duncan J Maskell Alexander W Tucker

J Clin Microbiol 2015 Dec 30;53(12):3812-21. Epub 2015 Sep 30.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://jcm.asm.org/content/53/12/3812.full.pdf
Web Search
http://jcm.asm.org/lookup/doi/10.1128/JCM.01991-15
Publisher Site
http://dx.doi.org/10.1128/JCM.01991-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4652097PMC
December 2015

Supramolecular structure in the membrane of Staphylococcus aureus.

Authors:
Jorge García-Lara Felix Weihs Xing Ma Lucas Walker Roy R Chaudhuri Jagath Kasturiarachchi Howard Crossley Ramin Golestanian Simon J Foster

Proc Natl Acad Sci U S A 2015 Dec 7;112(51):15725-30. Epub 2015 Dec 7.

The Krebs Institute, Department of Molecular Biology and Microbiology, University of Sheffield, Sheffield S10 2TN, United Kingdom;

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1073/pnas.1509557112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697411PMC
December 2015

Whole genome investigation of a divergent clade of the pathogen Streptococcus suis.

Authors:
Abiyad Baig Lucy A Weinert Sarah E Peters Kate J Howell Roy R Chaudhuri Jinhong Wang Matthew T G Holden Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Alexander W Tucker Duncan J Maskell

Front Microbiol 2015 4;6:1191. Epub 2015 Nov 4.

Department of Veterinary Medicine, University of Cambridge Cambridge, UK.

View Article

Download full-text PDF

 Source
https://www.repository.cam.ac.uk/bitstream/handle/1810/25143
Web Search
http://journal.frontiersin.org/Article/10.3389/fmicb.2015.01
Publisher Site
http://dx.doi.org/10.3389/fmicb.2015.01191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631834PMC
November 2015

Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae.

Authors:
Janine T Bossé Yanwen Li Stephanie Walker Tom Atherton Roberto Fernandez Crespo Susanna M Williamson Jon Rogers Roy R Chaudhuri Lucy A Weinert Olusegun Oshota Matt T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

J Antimicrob Chemother 2015 Aug 8;70(8):2217-22. Epub 2015 May 8.

Section of Paediatrics, Department of Medicine, Imperial College London, St Mary's Campus, London W2 1PG, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/jac/dkv121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4500777PMC
August 2015

Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae.

Authors:
Janine T Bossé Yanwen Li Tom G Atherton Stephanie Walker Susanna M Williamson Jon Rogers Roy R Chaudhuri Lucy A Weinert Matthew T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Vet Microbiol 2015 Aug 28;178(3-4):279-82. Epub 2015 May 28.

Section of Paediatrics, Department of Medicine, Imperial College London, St. Mary's Campus, London, W2 1PG, UK. Electronic address:

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.vetmic.2015.05.020DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4503812PMC
August 2015

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Authors:
Lucy A Weinert Roy R Chaudhuri Jinhong Wang Sarah E Peters Jukka Corander Thibaut Jombart Abiyad Baig Kate J Howell Minna Vehkala Niko Välimäki David Harris Tran Thi Bich Chieu Nguyen Van Vinh Chau James Campbell Constance Schultsz Julian Parkhill Stephen D Bentley Paul R Langford Andrew N Rycroft Brendan W Wren Jeremy Farrar Stephen Baker Ngo Thi Hoa Matthew T G Holden Alexander W Tucker Duncan J Maskell

Nat Commun 2015 May 12;6:7272. Epub 2015 May 12.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ncomms8272DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4462838PMC
May 2015

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

Authors:
Gilbert Smith Carl Smith John G Kenny Roy R Chaudhuri Michael G Ritchie

Mol Biol Evol 2015 Apr 21;32(4):888-95. Epub 2014 Dec 21.

School of Biology, University of St Andrews, St. Andrews, Fife, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/molbev/msu344DOI Listing
April 2015

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Authors:
Lucy A Weinert Roy R Chaudhuri Jinhong Wang Sarah E Peters Jukka Corander Thibaut Jombart Abiyad Baig Kate J Howell Minna Vehkala Niko Välimäki David Harris Tran Thi Bich Chieu Nguyen Van Vinh Chau James Campbell Constance Schultsz Julian Parkhill Stephen D Bentley Paul R Langford Andrew N Rycroft Brendan W Wren Jeremy Farrar Stephen Baker Ngo Thi Hoa Matthew T G Holden Alexander W Tucker Duncan J Maskell

Nat Commun 2015 Mar 31;6:6740. Epub 2015 Mar 31.

Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1038/ncomms7740DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4389249PMC
March 2015

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing.

Authors:
Robert Wilson Christian Bourne Roy R Chaudhuri Richard Gregory John Kenny Andrew Cossins

PLoS One 2014 25;9(6):e100572. Epub 2014 Jun 25.

Centre for Genomic Research at the Institute of Integrative Biology, University Of Liverpool, Liverpool, United Kingdom.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100572PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070925PMC
February 2015

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis.

Authors:
Kate J Howell Lucy A Weinert Roy R Chaudhuri Shi-Lu Luan Sarah E Peters Jukka Corander David Harris Øystein Angen Virginia Aragon Albert Bensaid Susanna M Williamson Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Matthew T G Holden Alexander W Tucker Duncan J Maskell

BMC Genomics 2014 Dec 24;15:1179. Epub 2014 Dec 24.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-15-1179DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4532294PMC
December 2014

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival.

Authors:
Mette T Christiansen Rolf S Kaas Roy R Chaudhuri Mark A Holmes Henrik Hasman Frank M Aarestrup

PLoS One 2014 12;9(2):e89018. Epub 2014 Feb 12.

National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0089018PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3923074PMC
October 2014

Multiplex PCR assay for unequivocal differentiation of Actinobacillus pleuropneumoniae serovars 1 to 3, 5 to 8, 10, and 12.

Authors:
Janine T Bossé Yanwen Li Øystein Angen Lucy A Weinert Roy R Chaudhuri Matthew T Holden Susanna M Williamson Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

J Clin Microbiol 2014 Jul 23;52(7):2380-5. Epub 2014 Apr 23.

Section of Paediatrics, Department of Medicine, Imperial College London, St. Mary's Campus, London, United Kingdom

View Article

Download full-text PDF

 Source
http://jcm.asm.org/cgi/doi/10.1128/JCM.00685-14
Publisher Site
http://dx.doi.org/10.1128/JCM.00685-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4097740PMC
July 2014

Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS).

Authors:
Shi-Lu Luan Roy R Chaudhuri Sarah E Peters Matthew Mayho Lucy A Weinert Sarah A Crowther Jinhong Wang Paul R Langford Andrew Rycroft Brendan W Wren Alexander W Tucker Duncan J Maskell

Vet Microbiol 2013 Oct 20;166(3-4):558-66. Epub 2013 Jul 20.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.vetmic.2013.07.008DOI Listing
October 2013

Gene content and diversity of the loci encoding biosynthesis of capsular polysaccharides of the 15 serovar reference strains of Haemophilus parasuis.

Authors:
Kate J Howell Lucy A Weinert Shi-Lu Luan Sarah E Peters Roy R Chaudhuri David Harris Oystein Angen Virginia Aragon Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Alexander W Tucker Duncan J Maskell

J Bacteriol 2013 Sep 19;195(18):4264-73. Epub 2013 Jul 19.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.00471-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3754760PMC
September 2013

Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals.

Authors:
Roy R Chaudhuri Eirwen Morgan Sarah E Peters Stephen J Pleasance Debra L Hudson Holly M Davies Jinhong Wang Pauline M van Diemen Anthony M Buckley Alison J Bowen Gillian D Pullinger Daniel J Turner Gemma C Langridge A Keith Turner Julian Parkhill Ian G Charles Duncan J Maskell Mark P Stevens

PLoS Genet 2013 Apr 18;9(4):e1003456. Epub 2013 Apr 18.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.pgen.1003456DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630085PMC
April 2013

Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms.

Authors:
Francis Dziva Heidi Hauser Thomas R Connor Pauline M van Diemen Graham Prescott Gemma C Langridge Sabine Eckert Roy R Chaudhuri Christa Ewers Melha Mellata Suman Mukhopadhyay Roy Curtiss Gordon Dougan Lothar H Wieler Nicholas R Thomson Derek J Pickard Mark P Stevens

Infect Immun 2013 Mar 28;81(3):838-49. Epub 2012 Dec 28.

Enteric Bacterial Pathogens Laboratory, Institute for Animal Health, Compton, Berkshire, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/IAI.00585-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584874PMC
March 2013

The evolution of the Escherichia coli phylogeny.

Authors:
Roy R Chaudhuri Ian R Henderson

Infect Genet Evol 2012 Mar 14;12(2):214-26. Epub 2012 Jan 14.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, United Kingdom.

View Article

Download full-text PDF

 Source
https://linkinghub.elsevier.com/retrieve/pii/S15671348120000
Publisher Site
http://dx.doi.org/10.1016/j.meegid.2012.01.005DOI Listing
March 2012

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome.

Authors:
Roy R Chaudhuri Lu Yu Alpa Kanji Timothy T Perkins Paul P Gardner Jyoti Choudhary Duncan J Maskell Andrew J Grant

Microbiology 2011 Oct 4;157(Pt 10):2922-2932. Epub 2011 Aug 4.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://mic.microbiologyresearch.org/content/journal/micro/10
Publisher Site
http://dx.doi.org/10.1099/mic.0.050278-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3353397PMC
October 2011

Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605.

Authors:
David J Clarke Roy R Chaudhuri Helen M Martin Barry J Campbell Jonathan M Rhodes Chrystala Constantinidou Mark J Pallen Nicholas J Loman Adam F Cunningham Douglas F Browning Ian R Henderson

J Bacteriol 2011 Sep 24;193(17):4540. Epub 2011 Jun 24.

Department of Microbiology and Alimentary Pharmabiotic Centre, University College Cork, Cork, Ireland.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.05374-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3165516PMC
September 2011

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

Authors:
Sabine E Eckert Francis Dziva Roy R Chaudhuri Gemma C Langridge Daniel J Turner Derek J Pickard Duncan J Maskell Nicholas R Thomson Mark P Stevens

J Bacteriol 2011 Apr 28;193(7):1771-6. Epub 2011 Jan 28.

Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Bush Farm Road, Roslin, Midlothian EH25 9RG, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.01292-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067669PMC
April 2011

Structure and function of BamE within the outer membrane and the β-barrel assembly machine.

Authors:
Timothy J Knowles Douglas F Browning Mark Jeeves Riyaz Maderbocus Sandya Rajesh Pooja Sridhar Eleni Manoli Danielle Emery Ulf Sommer Ashley Spencer Denisse L Leyton Derrick Squire Roy R Chaudhuri Mark R Viant Adam F Cunningham Ian R Henderson Michael Overduin

EMBO Rep 2011 Feb 7;12(2):123-8. Epub 2011 Jan 7.

School of Cancer Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.

View Article

Download full-text PDF

 Source
http://embor.embopress.org/cgi/doi/10.1038/embor.2010.202
Publisher Site
http://dx.doi.org/10.1038/embor.2010.202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3049429PMC
February 2011

A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

Authors:
Lisa C Crossman Roy R Chaudhuri Scott A Beatson Timothy J Wells Mickael Desvaux Adam F Cunningham Nicola K Petty Vivienne Mahon Carl Brinkley Jon L Hobman Stephen J Savarino Susan M Turner Mark J Pallen Charles W Penn Julian Parkhill A Keith Turner Timothy J Johnson Nicholas R Thomson Stephen G J Smith Ian R Henderson

J Bacteriol 2010 Nov 27;192(21):5822-31. Epub 2010 Aug 27.

The Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.00710-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2953697PMC
November 2010

MycoDB: an online database for comparative genomics of the mycobacteria and related organisms.

Authors:
Roy R Chaudhuri

Methods Mol Biol 2009 ;465:419-31

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1007/978-1-59745-207-6_27DOI Listing
September 2010

Characterization of ISBth4, a functional new IS231 variant from Bacillus thuringiensis MEX312.

Authors:
Jinhong Wang Roy R Chaudhuri David J Ellar

Plasmid 2010 Jan 29;63(1):46-52. Epub 2009 Oct 29.

Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.plasmid.2009.10.002DOI Listing
January 2010

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042.

Authors:
Roy R Chaudhuri Mohammed Sebaihia Jon L Hobman Mark A Webber Denisse L Leyton Martin D Goldberg Adam F Cunningham Anthony Scott-Tucker Paul R Ferguson Christopher M Thomas Gad Frankel Christoph M Tang Edward G Dudley Ian S Roberts David A Rasko Mark J Pallen Julian Parkhill James P Nataro Nicholas R Thomson Ian R Henderson

PLoS One 2010 Jan 20;5(1):e8801. Epub 2010 Jan 20.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008801PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808357PMC
January 2010

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH).

Authors:
Roy R Chaudhuri Andrew G Allen Paul J Owen Gil Shalom Karl Stone Marcus Harrison Timothy A Burgis Michael Lockyer Jorge Garcia-Lara Simon J Foster Stephen J Pleasance Sarah E Peters Duncan J Maskell Ian G Charles

BMC Genomics 2009 Jul 1;10:291. Epub 2009 Jul 1.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1186/1471-2164-10-291DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2721850PMC
July 2009

Comprehensive identification of Salmonella enterica serovar typhimurium genes required for infection of BALB/c mice.

Authors:
Roy R Chaudhuri Sarah E Peters Stephen J Pleasance Helen Northen Chrissie Willers Gavin K Paterson Danielle B Cone Andrew G Allen Paul J Owen Gil Shalom Dov J Stekel Ian G Charles Duncan J Maskell

PLoS Pathog 2009 Jul 31;5(7):e1000529. Epub 2009 Jul 31.

Department of Veterinary Medicine, University of Cambridge, Cambridge, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1371/journal.ppat.1000529DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2712085PMC
July 2009

xBASE2: a comprehensive resource for comparative bacterial genomics.

Authors:
Roy R Chaudhuri Nicholas J Loman Lori A S Snyder Christopher M Bailey Dov J Stekel Mark J Pallen

Nucleic Acids Res 2008 Jan 5;36(Database issue):D543-6. Epub 2007 Nov 5.

Centre for Systems Biology, University of Birmingham, Birmingham B15 2TT, UK.

View Article

Download full-text PDF

 Source
https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
Publisher Site
http://dx.doi.org/10.1093/nar/gkm928DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238843PMC
January 2008

Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.

Authors:
Roy R Chaudhuri Chuan-Peng Ren Leah Desmond Gemma A Vincent Nigel J Silman John K Brehm Michael J Elmore Michael J Hudson Mats Forsman Karen E Isherwood Darina Gurycová Nigel P Minton Richard W Titball Mark J Pallen Richard Vipond

PLoS One 2007 Apr 4;2(4):e352. Epub 2007 Apr 4.

Division of Immunity and Infection, University of Birmingham, Edgbaston, United Kindgom.

View Article

Download full-text PDF

 Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0000352PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1832225PMC
April 2007

Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages.

Authors:
Sue M Turner Roy R Chaudhuri Zhi-Dong Jiang Herbert DuPont Carlton Gyles Charles W Penn Mark J Pallen Ian R Henderson

J Clin Microbiol 2006 Dec 18;44(12):4528-36. Epub 2006 Oct 18.

Division of Immunity and Infection, The Medical School, The University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom, and St. Luke's Episcopal Hospital, Houston, TX 77083, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JCM.01474-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698409PMC
December 2006

xBASE, a collection of online databases for bacterial comparative genomics.

Authors:
Roy R Chaudhuri Mark J Pallen

Nucleic Acids Res 2006 Jan;34(Database issue):D335-7

Division of Immunity and Infection, University of Birmingham, Birmingham, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkj140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347502PMC
January 2006

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Authors:
Monica Riley Takashi Abe Martha B Arnaud Mary K B Berlyn Frederick R Blattner Roy R Chaudhuri Jeremy D Glasner Takashi Horiuchi Ingrid M Keseler Takehide Kosuge Hirotada Mori Nicole T Perna Guy Plunkett Kenneth E Rudd Margrethe H Serres Gavin H Thomas Nicholas R Thomson David Wishart Barry L Wanner

Nucleic Acids Res 2006 5;34(1):1-9. Epub 2006 Jan 5.

Josephine Bay Paul Center, Marine Biological Laboratory, Woods Hole, MA 02543, USA.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkj405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1325200PMC
January 2006

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria.

Authors:
Hong-Yu Ou Ling-Ling Chen James Lonnen Roy R Chaudhuri Ali Bin Thani Rebecca Smith Natalie J Garton Jay Hinton Mark Pallen Michael R Barer Kumar Rajakumar

Nucleic Acids Res 2006 Jan 9;34(1):e3. Epub 2006 Jan 9.

Department of Infection, Immunity and Inflammation, Leicester Medical School, University of Leicester, Leicester LE1 9HN, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gnj005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1326021PMC
January 2006

A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis.

Authors:
Diana Ideses Uri Gophna Yossi Paitan Roy R Chaudhuri Mark J Pallen Eliora Z Ron

J Bacteriol 2005 Dec;187(23):8164-71

Department of Molecular Microbiology and Biotechnology, Faculty of Life Sciences, Tel Aviv University, Israel.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.187.23.8164-8171.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1291271PMC
December 2005

Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.

Authors:
Mickaël Desvaux Arshad Khan Anthony Scott-Tucker Roy R Chaudhuri Mark J Pallen Ian R Henderson

Biochim Biophys Acta 2005 Sep;1745(2):223-53

The Institute for Biomedical Research (IBR), The University of Birmingham-The Medical School, Division of Immunity and Infection, Bacterial Pathogenesis and Genomics Unit, Edgbaston, Birmingham B15 2TT, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.bbamcr.2005.04.006DOI Listing
September 2005

Prevalence of pathogenicity island IICFT073 genes among extraintestinal clinical isolates of Escherichia coli.

Authors:
Nick J Parham Samantha J Pollard Roy R Chaudhuri Scott A Beatson Mickaël Desvaux Michael A Russell Joaquim Ruiz Amanda Fivian Jordi Vila Ian R Henderson

J Clin Microbiol 2005 May;43(5):2425-34

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, University of Birmingham, Birmingham B15 2TT, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JCM.43.5.2425-2434.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1153811PMC
May 2005

Bacterial flagellar diversity in the post-genomic era.

Authors:
Mark J Pallen Charles W Penn Roy R Chaudhuri

Trends Microbiol 2005 Apr;13(4):143-9

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Birmingham, UK B15 2TT.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.tim.2005.02.008DOI Listing
April 2005

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes.

Authors:
Hong-Yu Ou Rebecca Smith Sacha Lucchini Jay Hinton Roy R Chaudhuri Mark Pallen Michael R Barer Kumar Rajakumar

Nucleic Acids Res 2005 Jan 7;33(1):e3. Epub 2005 Jan 7.

Department of Infection, Immunity and Inflammation, Leicester Medical School, University of Leicester Leicester LE1 9HN, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gni005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546176PMC
January 2005

Regulators encoded in the Escherichia coli type III secretion system 2 gene cluster influence expression of genes within the locus for enterocyte effacement in enterohemorrhagic E. coli O157:H7.

Authors:
Lihong Zhang Roy R Chaudhuri Chrystala Constantinidou Jon L Hobman Mala D Patel Antony C Jones Donatella Sarti Andrew J Roe Isabella Vlisidou Robert K Shaw Francesco Falciani Mark P Stevens David L Gally Stuart Knutton Gad Frankel Charles W Penn Mark J Pallen

Infect Immun 2004 Dec;72(12):7282-93

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Birmingham B15 2TT, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/IAI.72.12.7282-7293.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC529121PMC
December 2004

An analysis of type-III secretion gene clusters in Chromobacterium violaceum.

Authors:
Helen J Betts Roy R Chaudhuri Mark J Pallen

Trends Microbiol 2004 Nov;12(11):476-82

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Institute for Biomedical Research, Medical School, University of Birmingham, Birmingham B15 2TT UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.tim.2004.09.010DOI Listing
November 2004

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition.

Authors:
Chuan-Peng Ren Roy R Chaudhuri Amanda Fivian Christopher M Bailey Martin Antonio Wayne M Barnes Mark J Pallen

J Bacteriol 2004 Jun;186(11):3547-60

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Birmingham B15 2TT, United Kingdom.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1128/JB.186.11.3547-3560.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC415751PMC
June 2004

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

Authors:
Roy R Chaudhuri Arshad M Khan Mark J Pallen

Nucleic Acids Res 2004 Jan;32(Database issue):D296-9

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1093/nar/gkh031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308765PMC
January 2004

Genomic analysis of secretion systems.

Authors:
Mark J Pallen Roy R Chaudhuri Ian R Henderson

Curr Opin Microbiol 2003 Oct;6(5):519-27

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, The Medical School, University of Birmingham, Vincent Drive, B15 2TT, Birmingham, UK.

View Article

Download full-text PDF

 Source
http://dx.doi.org/10.1016/j.mib.2003.09.005DOI Listing
October 2003