Roy R Chaudhuri

Roy R Chaudhuri

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Roy R Chaudhuri

Roy R Chaudhuri

Publications by authors named "Roy R Chaudhuri"

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59Publications

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Draft Whole-Genome Sequences of 10 Strains from Clinical and Environmental Sources.

Microbiol Resour Announc 2019 Jul 25;8(30). Epub 2019 Jul 25.

Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, United Kingdom

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http://dx.doi.org/10.1128/MRA.00170-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6658677PMC
July 2019

Sequencing a piece of history: complete genome sequence of the original strain.

Microb Genom 2017 03 23;3(3):mgen000106. Epub 2017 Mar 23.

1​Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK.

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http://dx.doi.org/10.1099/mgen.0.000106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382810PMC
March 2017

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus.

ISME J 2016 10 5;10(10):2468-77. Epub 2016 Apr 5.

European Centre for Environmental and Human Health, Medical School, University of Exeter, Penryn, UK.

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http://dx.doi.org/10.1038/ismej.2016.34DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5030687PMC
October 2016

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina.

J Bacteriol 2016 May 14;198(9):1393-400. Epub 2016 Apr 14.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom

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http://dx.doi.org/10.1128/JB.00925-15DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4836224PMC
May 2016

Supramolecular structure in the membrane of Staphylococcus aureus.

Proc Natl Acad Sci U S A 2015 Dec 7;112(51):15725-30. Epub 2015 Dec 7.

The Krebs Institute, Department of Molecular Biology and Microbiology, University of Sheffield, Sheffield S10 2TN, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1509557112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4697411PMC
December 2015

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

Mol Biol Evol 2015 Apr 21;32(4):888-95. Epub 2014 Dec 21.

School of Biology, University of St Andrews, St. Andrews, Fife, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msu344DOI Listing
April 2015

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing.

PLoS One 2014 25;9(6):e100572. Epub 2014 Jun 25.

Centre for Genomic Research at the Institute of Integrative Biology, University Of Liverpool, Liverpool, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100572PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070925PMC
February 2015

The evolution of the Escherichia coli phylogeny.

Infect Genet Evol 2012 Mar 14;12(2):214-26. Epub 2012 Jan 14.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, United Kingdom.

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https://linkinghub.elsevier.com/retrieve/pii/S15671348120000
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http://dx.doi.org/10.1016/j.meegid.2012.01.005DOI Listing
March 2012

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome.

Microbiology 2011 Oct 4;157(Pt 10):2922-2932. Epub 2011 Aug 4.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.

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http://mic.microbiologyresearch.org/content/journal/micro/10
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http://dx.doi.org/10.1099/mic.0.050278-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3353397PMC
October 2011

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

J Bacteriol 2011 Apr 28;193(7):1771-6. Epub 2011 Jan 28.

Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Bush Farm Road, Roslin, Midlothian EH25 9RG, United Kingdom.

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http://dx.doi.org/10.1128/JB.01292-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3067669PMC
April 2011

MycoDB: an online database for comparative genomics of the mycobacteria and related organisms.

Authors:
Roy R Chaudhuri

Methods Mol Biol 2009 ;465:419-31

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.

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http://dx.doi.org/10.1007/978-1-59745-207-6_27DOI Listing
September 2010

Characterization of ISBth4, a functional new IS231 variant from Bacillus thuringiensis MEX312.

Plasmid 2010 Jan 29;63(1):46-52. Epub 2009 Oct 29.

Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom.

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http://dx.doi.org/10.1016/j.plasmid.2009.10.002DOI Listing
January 2010

xBASE2: a comprehensive resource for comparative bacterial genomics.

Nucleic Acids Res 2008 Jan 5;36(Database issue):D543-6. Epub 2007 Nov 5.

Centre for Systems Biology, University of Birmingham, Birmingham B15 2TT, UK.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkm928DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238843PMC
January 2008

Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages.

J Clin Microbiol 2006 Dec 18;44(12):4528-36. Epub 2006 Oct 18.

Division of Immunity and Infection, The Medical School, The University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom, and St. Luke's Episcopal Hospital, Houston, TX 77083, USA.

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http://dx.doi.org/10.1128/JCM.01474-06DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1698409PMC
December 2006

xBASE, a collection of online databases for bacterial comparative genomics.

Nucleic Acids Res 2006 Jan;34(Database issue):D335-7

Division of Immunity and Infection, University of Birmingham, Birmingham, UK.

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http://dx.doi.org/10.1093/nar/gkj140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347502PMC
January 2006

A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis.

J Bacteriol 2005 Dec;187(23):8164-71

Department of Molecular Microbiology and Biotechnology, Faculty of Life Sciences, Tel Aviv University, Israel.

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http://dx.doi.org/10.1128/JB.187.23.8164-8171.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1291271PMC
December 2005

Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.

Biochim Biophys Acta 2005 Sep;1745(2):223-53

The Institute for Biomedical Research (IBR), The University of Birmingham-The Medical School, Division of Immunity and Infection, Bacterial Pathogenesis and Genomics Unit, Edgbaston, Birmingham B15 2TT, UK.

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http://dx.doi.org/10.1016/j.bbamcr.2005.04.006DOI Listing
September 2005

Prevalence of pathogenicity island IICFT073 genes among extraintestinal clinical isolates of Escherichia coli.

J Clin Microbiol 2005 May;43(5):2425-34

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, University of Birmingham, Birmingham B15 2TT, United Kingdom.

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http://dx.doi.org/10.1128/JCM.43.5.2425-2434.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1153811PMC
May 2005

Bacterial flagellar diversity in the post-genomic era.

Trends Microbiol 2005 Apr;13(4):143-9

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Birmingham, UK B15 2TT.

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http://dx.doi.org/10.1016/j.tim.2005.02.008DOI Listing
April 2005

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes.

Nucleic Acids Res 2005 Jan 7;33(1):e3. Epub 2005 Jan 7.

Department of Infection, Immunity and Inflammation, Leicester Medical School, University of Leicester Leicester LE1 9HN, UK.

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http://dx.doi.org/10.1093/nar/gni005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546176PMC
January 2005

An analysis of type-III secretion gene clusters in Chromobacterium violaceum.

Trends Microbiol 2004 Nov;12(11):476-82

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Institute for Biomedical Research, Medical School, University of Birmingham, Birmingham B15 2TT UK.

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http://dx.doi.org/10.1016/j.tim.2004.09.010DOI Listing
November 2004

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition.

J Bacteriol 2004 Jun;186(11):3547-60

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Birmingham B15 2TT, United Kingdom.

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http://dx.doi.org/10.1128/JB.186.11.3547-3560.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC415751PMC
June 2004

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

Nucleic Acids Res 2004 Jan;32(Database issue):D296-9

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, Medical School, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK.

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http://dx.doi.org/10.1093/nar/gkh031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC308765PMC
January 2004

Genomic analysis of secretion systems.

Curr Opin Microbiol 2003 Oct;6(5):519-27

Bacterial Pathogenesis and Genomics Unit, Division of Immunity and Infection, The Medical School, University of Birmingham, Vincent Drive, B15 2TT, Birmingham, UK.

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http://dx.doi.org/10.1016/j.mib.2003.09.005DOI Listing
October 2003