Roy R Chaudhuri

Architecture and Self-Assembly of Clostridium sporogenes and Clostridium botulinum Spore Surfaces Illustrate a General Protective Strategy across Spore Formers.

Authors:

Thamarai K Janganan Nic Mullin Ainhoa Dafis-Sagarmendi Jason Brunt Svetomir B Tzokov Sandra Stringer Anne Moir Roy R Chaudhuri Robert P Fagan Jamie K Hobbs Per A Bullough

mSphere 2020 07 1;5(4). Epub 2020 Jul 1.

Krebs Institute, University of Sheffield, Sheffield, United Kingdom

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July 2020

Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Nat Commun 2019 Nov 22;10(1):5326. Epub 2019 Nov 22.

Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK.

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November 2019

The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid.

Authors:

Rocío Canals Roy R Chaudhuri Rebecca E Steiner Siân V Owen Natalia Quinones-Olvera Melita A Gordon Michael Baym Michael Ibba Jay C D Hinton

PLoS Pathog 2019 09 27;15(9):e1007948. Epub 2019 Sep 27.

Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.

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September 2019

Draft Whole-Genome Sequences of 10 Strains from Clinical and Environmental Sources.

Authors:

Katie Gray Luke R Green Roy R Chaudhuri Jonathan G Shaw

Microbiol Resour Announc 2019 Jul 25;8(30). Epub 2019 Jul 25.

Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, United Kingdom

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July 2019

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

Authors:

Calum A Pattrick Joseph P Webb Jeffrey Green Roy R Chaudhuri Mark O Collins David J Kelly

mSystems 2019 Jun 11;4(4). Epub 2019 Jun 11.

Department of Molecular Biology and Biotechnology, The University of Sheffield, Sheffield, United Kingdom

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June 2019

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.

Authors:

Rocío Canals Disa L Hammarlöf Carsten Kröger Siân V Owen Wai Yee Fong Lizeth Lacharme-Lora Xiaojun Zhu Nicolas Wenner Sarah E Carden Jared Honeycutt Denise M Monack Robert A Kingsley Philip Brownridge Roy R Chaudhuri Will P M Rowe Alexander V Predeus Karsten Hokamp Melita A Gordon Jay C D Hinton

PLoS Biol 2019 01 15;17(1):e3000059. Epub 2019 Jan 15.

Institute of Integrative Biology, University of Liverpool, Liverpool, United Kingdom.

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January 2019

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle.

Authors:

Prerna Vohra Roy R Chaudhuri Matthew Mayho Christina Vrettou Cosmin Chintoan-Uta Nicholas R Thomson Jayne C Hope John Hopkins Mark P Stevens

BMC Genomics 2019 Jan 8;20(1):20. Epub 2019 Jan 8.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Edinburgh, EH25 9RG, UK.

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January 2019

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

Authors:

Olusegun Oshota Max Conway Maria Fookes Fernanda Schreiber Roy R Chaudhuri Lu Yu Fiona J E Morgan Simon Clare Jyoti Choudhary Nicholas R Thomson Pietro Lio Duncan J Maskell Pietro Mastroeni Andrew J Grant

PLoS One 2017 10;12(8):e0181365. Epub 2017 Aug 10.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

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October 2017

Sequencing a piece of history: complete genome sequence of the original strain.

Authors:

Karl A Dunne Roy R Chaudhuri Amanda E Rossiter Irene Beriotto Douglas F Browning Derrick Squire Adam F Cunningham Jeffrey A Cole Nicholas Loman Ian R Henderson

Microb Genom 2017 03 23;3(3):mgen000106. Epub 2017 Mar 23.

1Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK.

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March 2017

"Pathotyping" Multiplex PCR Assay for Haemophilus parasuis: a Tool for Prediction of Virulence.

Authors:

Kate J Howell Lucy A Weinert Sarah E Peters Jinhong Wang Juan Hernandez-Garcia Roy R Chaudhuri Shi-Lu Luan Øystein Angen Virginia Aragon Susanna M Williamson Paul R Langford Andrew N Rycroft Brendan W Wren Duncan J Maskell Alexander W Tucker

J Clin Microbiol 2017 09 14;55(9):2617-2628. Epub 2017 Jun 14.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

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September 2017

Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in .

Authors:

Janine T Bossé Yanwen Li Jon Rogers Roberto Fernandez Crespo Yinghui Li Roy R Chaudhuri Matthew T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Front Microbiol 2017 6;8:311. Epub 2017 Mar 6.

Section of Paediatrics, Department of Medicine, Imperial College London London, UK.

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March 2017

Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States.

Authors:

Graham P Stafford Roy R Chaudhuri Violet Haraszthy Valentin Friedrich Christina Schäffer Angela Ruscitto Kiyonobu Honma Ashu Sharma

Genome Announc 2016 Dec 1;4(6). Epub 2016 Dec 1.

Department of Oral Biology, University at Buffalo, SUNY, Buffalo, New York, USA

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December 2016

ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae.

Authors:

Janine T Bossé Yanwen Li Roberto Fernandez Crespo Roy R Chaudhuri Jon Rogers Matthew T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Front Microbiol 2016 15;7:810. Epub 2016 Jun 15.

Section of Paediatrics, Department of Medicine, Imperial College London London, UK.

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August 2016

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus.

Authors:

Sébastien Wielgoss Xavier Didelot Roy R Chaudhuri Xuan Liu Gareth D Weedall Gregory J Velicer Michiel Vos

ISME J 2016 10 5;10(10):2468-77. Epub 2016 Apr 5.

European Centre for Environmental and Human Health, Medical School, University of Exeter, Penryn, UK.

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October 2016

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina.

Authors:

Guangyu E Chen Andrew Hitchcock Philip J Jackson Roy R Chaudhuri Mark J Dickman C Neil Hunter Daniel P Canniffe

J Bacteriol 2016 May 14;198(9):1393-400. Epub 2016 Apr 14.

Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield, United Kingdom

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May 2016

Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae.

Authors:

Janine T Bossé Roy R Chaudhuri Yanwen Li Leon G Leanse Roberto Fernandez Crespo Paul Coupland Matthew T G Holden Denise M Bazzolli Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Genome Announc 2016 Jan 28;4(1). Epub 2016 Jan 28.

Department of Medicine, Section of Paediatrics, Imperial College London, London, United Kingdom

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January 2016

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91-/- phox Mice.

Authors:

Andrew J Grant Olusegun Oshota Roy R Chaudhuri Matthew Mayho Sarah E Peters Simon Clare Duncan J Maskell Pietro Mastroeni

Infect Immun 2016 Apr 24;84(4):989-997. Epub 2016 Mar 24.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

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April 2016

Supramolecular structure in the membrane of Staphylococcus aureus.

Authors:

Jorge García-Lara Felix Weihs Xing Ma Lucas Walker Roy R Chaudhuri Jagath Kasturiarachchi Howard Crossley Ramin Golestanian Simon J Foster

Proc Natl Acad Sci U S A 2015 Dec 7;112(51):15725-30. Epub 2015 Dec 7.

The Krebs Institute, Department of Molecular Biology and Microbiology, University of Sheffield, Sheffield S10 2TN, United Kingdom;

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December 2015

Whole genome investigation of a divergent clade of the pathogen Streptococcus suis.

Authors:

Abiyad Baig Lucy A Weinert Sarah E Peters Kate J Howell Roy R Chaudhuri Jinhong Wang Matthew T G Holden Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Alexander W Tucker Duncan J Maskell

Front Microbiol 2015 4;6:1191. Epub 2015 Nov 4.

Department of Veterinary Medicine, University of Cambridge Cambridge, UK.

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November 2015

Development of a Multiplex PCR Assay for Rapid Molecular Serotyping of Haemophilus parasuis.

Authors:

Kate J Howell Sarah E Peters Jinhong Wang Juan Hernandez-Garcia Lucy A Weinert Shi-Lu Luan Roy R Chaudhuri Øystein Angen Virginia Aragon Susanna M Williamson Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Duncan J Maskell Alexander W Tucker

J Clin Microbiol 2015 Dec 30;53(12):3812-21. Epub 2015 Sep 30.

Department of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

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December 2015

Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae.

Authors:

Janine T Bossé Yanwen Li Tom G Atherton Stephanie Walker Susanna M Williamson Jon Rogers Roy R Chaudhuri Lucy A Weinert Matthew T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

Vet Microbiol 2015 Aug 28;178(3-4):279-82. Epub 2015 May 28.

Section of Paediatrics, Department of Medicine, Imperial College London, St. Mary's Campus, London, W2 1PG, UK. Electronic address:

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August 2015

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Nat Commun 2015 May 12;6:7272. Epub 2015 May 12.

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May 2015

Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae.

Authors:

Janine T Bossé Yanwen Li Stephanie Walker Tom Atherton Roberto Fernandez Crespo Susanna M Williamson Jon Rogers Roy R Chaudhuri Lucy A Weinert Olusegun Oshota Matt T G Holden Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

J Antimicrob Chemother 2015 Aug 8;70(8):2217-22. Epub 2015 May 8.

Section of Paediatrics, Department of Medicine, Imperial College London, St Mary's Campus, London W2 1PG, UK.

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August 2015

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Nat Commun 2015 Mar 31;6:6740. Epub 2015 Mar 31.

Department of Veterinary Medicine, University of Cambridge, Cambridge CB3 0ES, UK.

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March 2015

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis.

Authors:

Kate J Howell Lucy A Weinert Roy R Chaudhuri Shi-Lu Luan Sarah E Peters Jukka Corander David Harris Øystein Angen Virginia Aragon Albert Bensaid Susanna M Williamson Julian Parkhill Paul R Langford Andrew N Rycroft Brendan W Wren Matthew T G Holden Alexander W Tucker Duncan J Maskell

BMC Genomics 2014 Dec 24;15:1179. Epub 2014 Dec 24.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge, CB3 0ES, UK.

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December 2014

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

Authors:

Gilbert Smith Carl Smith John G Kenny Roy R Chaudhuri Michael G Ritchie

Mol Biol Evol 2015 Apr 21;32(4):888-95. Epub 2014 Dec 21.

School of Biology, University of St Andrews, St. Andrews, Fife, United Kingdom.

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April 2015

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing.

Authors:

Robert Wilson Christian Bourne Roy R Chaudhuri Richard Gregory John Kenny Andrew Cossins

PLoS One 2014 25;9(6):e100572. Epub 2014 Jun 25.

Centre for Genomic Research at the Institute of Integrative Biology, University Of Liverpool, Liverpool, United Kingdom.

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February 2015

Multiplex PCR assay for unequivocal differentiation of Actinobacillus pleuropneumoniae serovars 1 to 3, 5 to 8, 10, and 12.

Authors:

Janine T Bossé Yanwen Li Øystein Angen Lucy A Weinert Roy R Chaudhuri Matthew T Holden Susanna M Williamson Duncan J Maskell Alexander W Tucker Brendan W Wren Andrew N Rycroft Paul R Langford

J Clin Microbiol 2014 Jul 23;52(7):2380-5. Epub 2014 Apr 23.

Section of Paediatrics, Department of Medicine, Imperial College London, St. Mary's Campus, London, United Kingdom

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July 2014

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival.

Authors:

Mette T Christiansen Rolf S Kaas Roy R Chaudhuri Mark A Holmes Henrik Hasman Frank M Aarestrup

PLoS One 2014 12;9(2):e89018. Epub 2014 Feb 12.

National Food Institute, Technical University of Denmark, Kongens Lyngby, Denmark.

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October 2014

Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS).

Authors:

Shi-Lu Luan Roy R Chaudhuri Sarah E Peters Matthew Mayho Lucy A Weinert Sarah A Crowther Jinhong Wang Paul R Langford Andrew Rycroft Brendan W Wren Alexander W Tucker Duncan J Maskell

Vet Microbiol 2013 Oct 20;166(3-4):558-66. Epub 2013 Jul 20.

Department of Veterinary Medicine, University of Cambridge, Madingley Road, Cambridge CB3 0ES, UK.

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October 2013

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