Rosamonde E Banks

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department Health and Human Services, Bethesda, MS, USA. Electronic address:

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September 2018

A General Framework for Interrogation of mRNA Stability Programs Identifies RNA-Binding Proteins that Govern Cancer Transcriptomes.

Authors:

Gabrielle Perron Pouria Jandaghi Shraddha Solanki Maryam Safisamghabadi Cristina Storoz Mehran Karimzadeh Andreas I Papadakis Madeleine Arseneault Ghislaine Scelo Rosamonde E Banks Jorg Tost Mark Lathrop Simon Tanguay Alvis Brazma Sidong Huang Fadi Brimo Hamed S Najafabadi Yasser Riazalhosseini

Cell Rep 2018 05;23(6):1639-1650

Department of Human Genetics, McGill University, Montreal, QC H3A 1B1, Canada; McGill University and Genome Quebec Innovation Centre, Montreal, QC H3A 0G1, Canada. Electronic address:

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May 2018

Genetic Variants Related to Longer Telomere Length are Associated with Increased Risk of Renal Cell Carcinoma.

Authors:

Mitchell J Machiela Jonathan N Hofmann Robert Carreras-Torres Kevin M Brown Mattias Johansson Zhaoming Wang Matthieu Foll Peng Li Nathaniel Rothman Sharon A Savage Valerie Gaborieau James D McKay Yuanqing Ye Marc Henrion Fiona Bruinsma Susan Jordan Gianluca Severi Kristian Hveem Lars J Vatten Tony Fletcher Kvetoslava Koppova Susanna C Larsson Alicja Wolk Rosamonde E Banks Peter J Selby Douglas F Easton Paul Pharoah Gabriella Andreotti Laura E Beane Freeman Stella Koutros Demetrius Albanes Satu Mannisto Stephanie Weinstein Peter E Clark Todd E Edwards Loren Lipworth Susan M Gapstur Victoria L Stevens Hallie Carol Matthew L Freedman Mark M Pomerantz Eunyoung Cho Peter Kraft Mark A Preston Kathryn M Wilson J Michael Gaziano Howard S Sesso Amanda Black Neal D Freedman Wen-Yi Huang John G Anema Richard J Kahnoski Brian R Lane Sabrina L Noyes David Petillo Leandro M Colli Joshua N Sampson Celine Besse Helene Blanche Anne Boland Laurie Burdette Egor Prokhortchouk Konstantin G Skryabin Meredith Yeager Mirjana Mijuskovic Miodrag Ognjanovic Lenka Foretova Ivana Holcatova Vladimir Janout Dana Mates Anush Mukeriya Stefan Rascu David Zaridze Vladimir Bencko Cezary Cybulski Eleonora Fabianova Viorel Jinga Jolanta Lissowska Jan Lubinski Marie Navratilova Peter Rudnai Neonila Szeszenia-Dabrowska Simone Benhamou Geraldine Cancel-Tassin Olivier Cussenot H Bas Bueno-de-Mesquita Federico Canzian Eric J Duell Börje Ljungberg Raviprakash T Sitaram Ulrike Peters Emily White Garnet L Anderson Lisa Johnson Juhua Luo Julie Buring I-Min Lee Wong-Ho Chow Lee E Moore Christopher Wood Timothy Eisen James Larkin Toni K Choueiri G Mark Lathrop Bin Tean Teh Jean-Francois Deleuze Xifeng Wu Richard S Houlston Paul Brennan Stephen J Chanock Ghislaine Scelo Mark P Purdue

Eur Urol 2017 11 7;72(5):747-754. Epub 2017 Aug 7.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department Health and Human Services, Bethesda, MS, USA. Electronic address:

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November 2017

Genome-wide association study identifies multiple risk loci for renal cell carcinoma.

Authors:

Ghislaine Scelo Mark P Purdue Kevin M Brown Mattias Johansson Zhaoming Wang Jeanette E Eckel-Passow Yuanqing Ye Jonathan N Hofmann Jiyeon Choi Matthieu Foll Valerie Gaborieau Mitchell J Machiela Leandro M Colli Peng Li Joshua N Sampson Behnoush Abedi-Ardekani Celine Besse Helene Blanche Anne Boland Laurie Burdette Amelie Chabrier Geoffroy Durand Florence Le Calvez-Kelm Egor Prokhortchouk Nivonirina Robinot Konstantin G Skryabin Magdalena B Wozniak Meredith Yeager Gordana Basta-Jovanovic Zoran Dzamic Lenka Foretova Ivana Holcatova Vladimir Janout Dana Mates Anush Mukeriya Stefan Rascu David Zaridze Vladimir Bencko Cezary Cybulski Eleonora Fabianova Viorel Jinga Jolanta Lissowska Jan Lubinski Marie Navratilova Peter Rudnai Neonila Szeszenia-Dabrowska Simone Benhamou Geraldine Cancel-Tassin Olivier Cussenot Laura Baglietto Heiner Boeing Kay-Tee Khaw Elisabete Weiderpass Borje Ljungberg Raviprakash T Sitaram Fiona Bruinsma Susan J Jordan Gianluca Severi Ingrid Winship Kristian Hveem Lars J Vatten Tony Fletcher Kvetoslava Koppova Susanna C Larsson Alicja Wolk Rosamonde E Banks Peter J Selby Douglas F Easton Paul Pharoah Gabriella Andreotti Laura E Beane Freeman Stella Koutros Demetrius Albanes Satu Männistö Stephanie Weinstein Peter E Clark Todd L Edwards Loren Lipworth Susan M Gapstur Victoria L Stevens Hallie Carol Matthew L Freedman Mark M Pomerantz Eunyoung Cho Peter Kraft Mark A Preston Kathryn M Wilson J Michael Gaziano Howard D Sesso Amanda Black Neal D Freedman Wen-Yi Huang John G Anema Richard J Kahnoski Brian R Lane Sabrina L Noyes David Petillo Bin Tean Teh Ulrike Peters Emily White Garnet L Anderson Lisa Johnson Juhua Luo Julie Buring I-Min Lee Wong-Ho Chow Lee E Moore Christopher Wood Timothy Eisen Marc Henrion James Larkin Poulami Barman Bradley C Leibovich Toni K Choueiri G Mark Lathrop Nathaniel Rothman Jean-Francois Deleuze James D McKay Alexander S Parker Xifeng Wu Richard S Houlston Paul Brennan Stephen J Chanock

Nat Commun 2017 06 9;8:15724. Epub 2017 Jun 9.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department Health and Human Services, Bethesda, Maryland 20892, USA.

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June 2017

Loss of chromosome Y leads to down regulation of KDM5D and KDM6C epigenetic modifiers in clear cell renal cell carcinoma.

Sci Rep 2017 03 23;7:44876. Epub 2017 Mar 23.

Department of Human Genetics, McGill University, 1205 Dr Penfield Avenue, Montreal, QC, H3A 1B1, Canada.

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March 2017

Systematic analysis of circulating soluble angiogenesis-associated proteins in ICON7 identifies Tie2 as a biomarker of vascular progression on bevacizumab.

Authors:

Cong Zhou Andrew Clamp Alison Backen Carlo Berzuini Andrew Renehan Rosamonde E Banks Richard Kaplan Stefan J Scherer Gunnar B Kristensen Eric Pujade-Lauraine Caroline Dive Gordon C Jayson

Br J Cancer 2016 Jul 28;115(2):228-35. Epub 2016 Jun 28.

Institute of Cancer Sciences, University of Manchester, Manchester, UK.

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July 2016

CAPG and GIPC1: Breast Cancer Biomarkers for Bone Metastasis Development and Treatment.

Authors:

Jules A Westbrook David A Cairns Jianhe Peng Valerie Speirs Andrew M Hanby Ingunn Holen Steven L Wood Penelope D Ottewell Helen Marshall Rosamonde E Banks Peter J Selby Robert E Coleman Janet E Brown

J Natl Cancer Inst 2016 Apr 12;108(4). Epub 2016 Jan 12.

Affiliations of authors:Academic Unit of Clinical Oncology, University of Sheffield , Sheffield , UK (JAW*, IH, PDO, REC, JEB*); Cancer Research UK Leeds Centre (JAW, DAC, JP, SLW, REB, PJS, JEB), Clinical Trials Research Unit, Leeds Institute of Clinical Trials Research (DAC*, HM), and Clinical and Biomedical Proteomics Group (JAW, DAC, JP, SLW, REB, PJS, JEB) and Pathology and Tumor Biology (VS, AMH), Leeds Institute of Cancer and Pathology, University of Leeds , UK ; Department of Oncology and Metabolism, University of Sheffield, Sheffield , UK (SLW*).

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April 2016

Aristolochic acid exposure in Romania and implications for renal cell carcinoma.

Authors:

Robert J Turesky Byeong Hwa Yun Paul Brennan Dana Mates Viorel Jinga Patricia Harnden Rosamonde E Banks Helene Blanche Marie-Therese Bihoreau Priscilia Chopard Louis Letourneau G Mark Lathrop Ghislaine Scelo

Br J Cancer 2016 Jan 10;114(1):76-80. Epub 2015 Dec 10.

International Agency for Research on Cancer (IARC), 150 Cours Albert Thomas, Lyon 69008, France.

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January 2016

C-STrap Sample Preparation Method--In-Situ Cysteinyl Peptide Capture for Bottom-Up Proteomics Analysis in the STrap Format.

Authors:

Alexandre Zougman Rosamonde E Banks

PLoS One 2015 25;10(9):e0138775. Epub 2015 Sep 25.

Clinical and Biomedical Proteomics Group, Cancer Research UK Centre, Leeds Institute of Cancer and Pathology, St James's University Hospital, Leeds, United Kingdom.

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June 2016

An analysis of the impact of pre-analytical factors on the urine proteome: Sample processing time, temperature, and proteolysis.

Authors:

Sophie Hepburn David A Cairns David Jackson Rachel A Craven Beverley Riley Michelle Hutchinson Steven Wood Matthew Welberry Smith Douglas Thompson Rosamonde E Banks

Proteomics Clin Appl 2015 Jun 26;9(5-6):507-21. Epub 2015 Feb 26.

Clinical and Biomedical Proteomics Group, Leeds Institute of Cancer and Pathology, St James's University Hospital, Leeds, UK.

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June 2015

Variation in genomic landscape of clear cell renal cell carcinoma across Europe.

Authors:

Ghislaine Scelo Yasser Riazalhosseini Liliana Greger Louis Letourneau Mar Gonzàlez-Porta Magdalena B Wozniak Mathieu Bourgey Patricia Harnden Lars Egevad Sharon M Jackson Mehran Karimzadeh Madeleine Arseneault Pierre Lepage Alexandre How-Kit Antoine Daunay Victor Renault Hélène Blanché Emmanuel Tubacher Jeremy Sehmoun Juris Viksna Edgars Celms Martins Opmanis Andris Zarins Naveen S Vasudev Morag Seywright Behnoush Abedi-Ardekani Christine Carreira Peter J Selby Jon J Cartledge Graham Byrnes Jiri Zavadil Jing Su Ivana Holcatova Antonin Brisuda David Zaridze Anush Moukeria Lenka Foretova Marie Navratilova Dana Mates Viorel Jinga Artem Artemov Artem Nedoluzhko Alexander Mazur Sergey Rastorguev Eugenia Boulygina Simon Heath Marta Gut Marie-Therese Bihoreau Doris Lechner Mario Foglio Ivo G Gut Konstantin Skryabin Egor Prokhortchouk Anne Cambon-Thomsen Johan Rung Guillaume Bourque Paul Brennan Jörg Tost Rosamonde E Banks Alvis Brazma G Mark Lathrop

Nat Commun 2014 Oct 29;5:5135. Epub 2014 Oct 29.

1] Department of Human Genetics, McGill University, 1205 Dr Penfield Avenue, Montreal, Quebec, Canada H3A 1B1 [2] Fondation Jean Dausset - Centre d'Etude du Polymorphisme Humain, 27 rue Juliette Dodu, 75010 Paris, France [3] Centre National de Génotypage, CEA - Institute de Génomique, 2 rue Gaston Crémieux, 91000 Evry, France.

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October 2014

Protein Biomarker Research in UK Hospital Clinical Biochemistry Laboratories: A Survey of Current Practice and Views.

Authors:

Sophie Hepburn Rosamonde E Banks Douglas Thompson

Clin Biochem Rev 2014 May;35(2):115-33

Department of Blood Sciences, Leeds Teaching Hospitals NHS Trust; ; Clinical and Biomedical Proteomics Group, Leeds Institute of Molecular Medicine, St James's University Hospital, Leeds, UK.

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May 2014

The combination of circulating Ang1 and Tie2 levels predicts progression-free survival advantage in bevacizumab-treated patients with ovarian cancer.

Authors:

Alison Backen Andrew G Renehan Andrew R Clamp Carlo Berzuini Cong Zhou Amit Oza Selina Bannoo Stefan J Scherer Rosamonde E Banks Caroline Dive Gordon C Jayson

Clin Cancer Res 2014 Sep 19;20(17):4549-4558. Epub 2014 Jun 19.

Translational Angiogenesis Group, University of Manchester and Christie Hospital, Wilmslow Road, Withington, Manchester, M20 4BX, UK.

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September 2014

Suspension trapping (STrap) sample preparation method for bottom-up proteomics analysis.

Authors:

Alexandre Zougman Peter J Selby Rosamonde E Banks

Proteomics 2014 May 26;14(9):1006-0. Epub 2014 Mar 26.

Cancer Research UK Centre, Leeds Institute of Cancer and Pathology, St James's University Hospital, Leeds, UK.

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May 2014

Biomarkers and response to bevacizumab--response.

Authors:

Fiona Collinson Michelle Hutchinson Rachel A Craven David A Cairns Zougman Alexandre Tobias C Wind Narinder Gahir Michael P Messenger Sharon Jackson Douglas Thompson Cybil Adusei Jonathan Ledermann Geoffrey Hall Gordon C Jayson Peter J Selby Rosamonde E Banks

Clin Cancer Res 2014 Feb;20(4):1058

Authors' Affiliations: Clinical Trials Research Unit, Leeds Institute of Clinical Trials Research, University of Leeds; St James's Institute of Oncology, Bexley Wing; Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St James's University Hospital; Department of Clinical Biochemistry and Immunology, Leeds General Infirmary, Leeds; MRC Clinical Trials Unit; UCL Cancer Institute, University College, London; and Christie Hospital, University of Manchester, Withington, Manchester, United Kingdom.

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February 2014

Discovery and validation of urinary biomarkers for detection of renal cell carcinoma.

Authors:

Maria Frantzi Jochen Metzger Rosamonde E Banks Holger Husi Julie Klein Mohammed Dakna William Mullen Jonathan J Cartledge Joost P Schanstra Korbinian Brand Markus A Kuczyk Harald Mischak Antonia Vlahou Dan Theodorescu Axel S Merseburger

J Proteomics 2014 Feb 25;98:44-58. Epub 2013 Dec 25.

Hannover Medical School, Department of Urology and Urological Oncology, Hannover, Germany.

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February 2014

UBE2QL1 is disrupted by a constitutional translocation associated with renal tumor predisposition and is a novel candidate renal tumor suppressor gene.

Authors:

Naomi C Wake Christopher J Ricketts Mark R Morris Elena Prigmore Susan M Gribble Anne-Bine Skytte Michael Brown Noel Clarke Rosamonde E Banks Shirley Hodgson Andrew S Turnell Eamonn R Maher Emma R Woodward

Hum Mutat 2013 Dec 7;34(12):1650-61. Epub 2013 Oct 7.

Centre for Rare Diseases and Personalised Medicine, School of Clinical and Experimental Medicine, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.

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December 2013

VHL-dependent regulation of a β-dystroglycan glycoform and glycogene expression in renal cancer.

Authors:

Vassilis Aggelis Rachel A Craven Jianhe Peng Patricia Harnden Lana Schaffer Gilberto E Hernandez Steven R Head Eamonn R Maher Robert Tonge Peter J Selby Rosamonde E Banks

Int J Oncol 2013 Nov 21;43(5):1368-76. Epub 2013 Aug 21.

Cancer Research UK Centre, Leeds Institute of Cancer and Pathology, St. James's University Hospital, Leeds LS9 7TF, UK.

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November 2013

Predicting response to bevacizumab in ovarian cancer: a panel of potential biomarkers informing treatment selection.

Authors:

Fiona Collinson Michelle Hutchinson Rachel A Craven David A Cairns Alexandre Zougman Tobias C Wind Narinder Gahir Michael P Messenger Sharon Jackson Douglas Thompson Cybil Adusei Jonathan A Ledermann Geoffrey Hall Gordon C Jayson Peter J Selby Rosamonde E Banks

Clin Cancer Res 2013 Sep 9;19(18):5227-39. Epub 2013 Aug 9.

Authors' Affiliations: Clinical Trials Research Unit, Leeds Institute of Clinical Trials Research, University of Leeds; St James's Institute of Oncology, Bexley Wing; Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St James's University Hospital; Department of Clinical Biochemistry and Immunology, Leeds General Infirmary, Leeds; MRC Clinical Trials Unit; UCL Cancer Institute, University College, London; and Christie Hospital, University of Manchester, Withington, Manchester, United Kingdom.

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September 2013

Oncogene-induced cellular senescence elicits an anti-Warburg effect.

Authors:

Rosamonde E Banks

Proteomics 2013 Sep;13(17):2542-3

Clinical and Biomedical Proteomics Group, Leeds Institute of Cancer and Pathology, University of Leeds, Leeds, UK.

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September 2013

Serum aminoacylase-1 is a novel biomarker with potential prognostic utility for long-term outcome in patients with delayed graft function following renal transplantation.

Authors:

Matthew P Welberry Smith Alexandre Zougman David A Cairns Michelle Wilson Tobias Wind Steven L Wood Douglas Thompson Michael P Messenger Andrew Mooney Peter J Selby Andrew J P Lewington Rosamonde E Banks

Kidney Int 2013 Dec 5;84(6):1214-25. Epub 2013 Jun 5.

1] Clinical and Biomedical Proteomics Group, Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St James's University Hospital, Leeds, UK [2] Department of Renal Medicine, Lincoln Wing, St James's University Hospital, Leeds, UK.

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December 2013

A comparison of the analytical performance of five commercially available assays for neutrophil gelatinase-associated lipocalin using urine.

Authors:

Rebecca L Kift Michael P Messenger Tobias C Wind Sophie Hepburn Michelle Wilson Douglas Thompson Matthew Welberry Smith Catharine Sturgeon Andrew J Lewington Peter J Selby Rosamonde E Banks

Ann Clin Biochem 2013 May;50(Pt 3):236-44

Blood Sciences, Leeds General Infirmary, Great George Street, Leeds KS1 3EX, UK.

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May 2013

Proteomic studies of urinary biomarkers for prostate, bladder and kidney cancers.

Authors:

Steven L Wood Margaret A Knowles Douglas Thompson Peter J Selby Rosamonde E Banks

Nat Rev Urol 2013 Apr 26;10(4):206-18. Epub 2013 Feb 26.

Wolfson Molecular Imaging Centre, 27 Palatine Road, Withington, Manchester M20 3LJ, UK.

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April 2013

Proteomics and the search for biomarkers for renal cancer.

Authors:

Rachel A Craven Naveen S Vasudev Rosamonde E Banks

Clin Biochem 2013 Apr 7;46(6):456-65. Epub 2012 Dec 7.

Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St James's University Hospital, Leeds LS9 7TF, UK.

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April 2013

Impact of pre-analytical factors on the proteomic analysis of formalin-fixed paraffin-embedded tissue.

Authors:

Seonaid M Thompson Rachel A Craven Niroshini J Nirmalan Patricia Harnden Peter J Selby Rosamonde E Banks

Proteomics Clin Appl 2013 Apr 6;7(3-4):241-51. Epub 2013 Mar 6.

Clinical and Biomedical Proteomics Group, Leeds Institute of Molecular Medicine, St. James's University Hospital, United Kingdom.

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April 2013

Proteomic analysis of formalin-fixed paraffin-embedded renal tissue samples by label-free MS: assessment of overall technical variability and the impact of block age.

Authors:

Rachel A Craven David A Cairns Alexandre Zougman Patricia Harnden Peter J Selby Rosamonde E Banks

Proteomics Clin Appl 2013 Apr 6;7(3-4):273-82. Epub 2013 Mar 6.

Cancer Research UK Centre,, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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April 2013

Retinoic acid-induced protein 3: identification and characterisation of a novel prognostic colon cancer biomarker.

Authors:

Alexandre Zougman Gordon G Hutchins David A Cairns Eldo Verghese Sarah L Perry David G Jayne Peter J Selby Rosamonde E Banks

Eur J Cancer 2013 Jan 26;49(2):531-9. Epub 2012 Sep 26.

Clinical and Biomedical Proteomics Group, Cancer Research UK Centre, St. James's University Hospital, Leeds, UK.

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January 2013

Renal cancer biomarkers: the promise of personalized care.

Authors:

Naveen S Vasudev Peter J Selby Rosamonde E Banks

BMC Med 2012 Sep 27;10:112. Epub 2012 Sep 27.

The Institute of Cancer Research, Fulham Road, London SW3 6JB, UK.

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September 2012

Determination of the consequences of VHL mutations on VHL transcripts in renal cell carcinoma.

Authors:

Claire Taylor Rachel A Craven Patricia Harnden Peter J Selby Rosamonde E Banks

Int J Oncol 2012 Oct 20;41(4):1229-40. Epub 2012 Jul 20.

Cancer Research UK Cancer Centre Genomics Facility, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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October 2012

A genome-wide association study identifies a novel susceptibility locus for renal cell carcinoma on 12p11.23.

Authors:

Xifeng Wu Ghislaine Scelo Mark P Purdue Nathaniel Rothman Mattias Johansson Yuanqing Ye Zhaoming Wang Diana Zelenika Lee E Moore Christopher G Wood Egor Prokhortchouk Valerie Gaborieau Kevin B Jacobs Wong-Ho Chow Jorge R Toro David Zaridze Jie Lin Jan Lubinski Joanna Trubicka Neonilia Szeszenia-Dabrowska Jolanta Lissowska Peter Rudnai Eleonora Fabianova Dana Mates Viorel Jinga Vladimir Bencko Alena Slamova Ivana Holcatova Marie Navratilova Vladimir Janout Paolo Boffetta Joanne S Colt Faith G Davis Kendra L Schwartz Rosamonde E Banks Peter J Selby Patricia Harnden Christine D Berg Ann W Hsing Robert L Grubb Heiner Boeing Paolo Vineis Françoise Clavel-Chapelon Domenico Palli Rosario Tumino Vittorio Krogh Salvatore Panico Eric J Duell José Ramón Quirós Maria-José Sanchez Carmen Navarro Eva Ardanaz Miren Dorronsoro Kay-Tee Khaw Naomi E Allen H Bas Bueno-de-Mesquita Petra H M Peeters Dimitrios Trichopoulos Jakob Linseisen Börje Ljungberg Kim Overvad Anne Tjønneland Isabelle Romieu Elio Riboli Victoria L Stevens Michael J Thun W Ryan Diver Susan M Gapstur Paul D Pharoah Douglas F Easton Demetrius Albanes Jarmo Virtamo Lars Vatten Kristian Hveem Tony Fletcher Kvetoslava Koppova Olivier Cussenot Geraldine Cancel-Tassin Simone Benhamou Michelle A Hildebrandt Xia Pu Mario Foglio Doris Lechner Amy Hutchinson Meredith Yeager Joseph F Fraumeni Mark Lathrop Konstantin G Skryabin James D McKay Jian Gu Paul Brennan Stephen J Chanock

Hum Mol Genet 2012 Jan 18;21(2):456-62. Epub 2011 Oct 18.

Department of Epidemiology, Division of Cancer Prevention and Population Sciences, The University of Texas M.D. Anderson Cancer Center, Houston, TX, USA.

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January 2012

A pilot study to investigate the potential of mass spectrometry profiling in the discovery of novel serum markers in chronic renal disease.

Authors:

Douglas Thompson Willem Develter David A Cairns Jennifer H Barrett David A Perkins Anthea J Stanley Andrew Mooney Peter J Selby Rosamonde E Banks

Proteomics Clin Appl 2011 Oct 7;5(9-10):523-31. Epub 2011 Sep 7.

Clinical Biochemistry and Immunology, The General Infirmary, Leeds, UK.

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October 2011

A systematic analysis of the effects of increasing degrees of serum immunodepletion in terms of depth of coverage and other key aspects in top-down and bottom-up proteomic analyses.

Authors:

Matthew P Welberry Smith Steven L Wood Alexandre Zougman Jenny T C Ho Jianhe Peng David Jackson David A Cairns Andrew J P Lewington Peter J Selby Rosamonde E Banks

Proteomics 2011 Jun 5;11(11):2222-35. Epub 2011 May 5.

Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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June 2011

Shotgun proteomics of human bile in hilar cholangiocarcinoma.

Authors:

Shahid G Farid Rachel A Craven Jianhe Peng Glenn K Bonney David N Perkins Peter J Selby K Rajendra Prasad Rosamonde E Banks

Proteomics 2011 May 18;11(10):2134-8. Epub 2011 Apr 18.

Department of Hepatopancreaticobiliary Surgery, St James's University Hospital, Leeds, UK.

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May 2011

Measuring carbonic anhydrase IX as a hypoxia biomarker: differences in concentrations in serum and plasma using a commercial enzyme-linked immunosorbent assay due to influences of metal ions.

Authors:

Tobias C Wind Michael P Messenger Douglas Thompson Peter J Selby Rosamonde E Banks

Ann Clin Biochem 2011 Mar 2;48(Pt 2):112-20. Epub 2011 Mar 2.

Clinical and Biomedical Proteomics Group, Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St James's University Hospital, Leeds, UK.

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March 2011

Report from the Wellcome Trust/EBA “Perspectives in Clinical Proteomics” retreat--a strategy to implement next-generation proteomic analyses to the clinic for patient benefit: pathway to translation.

Authors:

Scott D Patterson Jennifer E Van Eyk Rosamonde E Banks

Proteomics Clin Appl 2010 Dec;4(12):883-7

Medical Sciences, Amgen Inc., Thousand Oaks, CA, USA.

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December 2010

Banking of clinical samples for proteomic biomarker studies: a consideration of logistical issues with a focus on pre-analytical variation.

Authors:

David H Jackson Rosamonde E Banks

Proteomics Clin Appl 2010 Mar 7;4(3):250-70. Epub 2010 Jan 7.

Clinical and Biomedical Proteomics Group, Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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March 2010

Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.

Authors:

Mark P Purdue Mattias Johansson Diana Zelenika Jorge R Toro Ghislaine Scelo Lee E Moore Egor Prokhortchouk Xifeng Wu Lambertus A Kiemeney Valerie Gaborieau Kevin B Jacobs Wong-Ho Chow David Zaridze Vsevolod Matveev Jan Lubinski Joanna Trubicka Neonila Szeszenia-Dabrowska Jolanta Lissowska Péter Rudnai Eleonora Fabianova Alexandru Bucur Vladimir Bencko Lenka Foretova Vladimir Janout Paolo Boffetta Joanne S Colt Faith G Davis Kendra L Schwartz Rosamonde E Banks Peter J Selby Patricia Harnden Christine D Berg Ann W Hsing Robert L Grubb Heiner Boeing Paolo Vineis Françoise Clavel-Chapelon Domenico Palli Rosario Tumino Vittorio Krogh Salvatore Panico Eric J Duell José Ramón Quirós Maria-José Sanchez Carmen Navarro Eva Ardanaz Miren Dorronsoro Kay-Tee Khaw Naomi E Allen H Bas Bueno-de-Mesquita Petra H M Peeters Dimitrios Trichopoulos Jakob Linseisen Börje Ljungberg Kim Overvad Anne Tjønneland Isabelle Romieu Elio Riboli Anush Mukeria Oxana Shangina Victoria L Stevens Michael J Thun W Ryan Diver Susan M Gapstur Paul D Pharoah Douglas F Easton Demetrius Albanes Stephanie J Weinstein Jarmo Virtamo Lars Vatten Kristian Hveem Inger Njølstad Grethe S Tell Camilla Stoltenberg Rajiv Kumar Kvetoslava Koppova Olivier Cussenot Simone Benhamou Egbert Oosterwijk Sita H Vermeulen Katja K H Aben Saskia L van der Marel Yuanqing Ye Christopher G Wood Xia Pu Alexander M Mazur Eugenia S Boulygina Nikolai N Chekanov Mario Foglio Doris Lechner Ivo Gut Simon Heath Hélène Blanche Amy Hutchinson Gilles Thomas Zhaoming Wang Meredith Yeager Joseph F Fraumeni Konstantin G Skryabin James D McKay Nathaniel Rothman Stephen J Chanock Mark Lathrop Paul Brennan

Nat Genet 2011 Jan 5;43(1):60-5. Epub 2010 Dec 5.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department Health and Human Services, Bethesda, Maryland, USA.

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January 2011

Initial development and validation of a novel extraction method for quantitative mining of the formalin-fixed, paraffin-embedded tissue proteome for biomarker investigations.

Authors:

Niroshini J Nirmalan Christopher Hughes Jianhe Peng Therese McKenna James Langridge David A Cairns Patricia Harnden Peter J Selby Rosamonde E Banks

J Proteome Res 2011 Feb 23;10(2):896-906. Epub 2010 Dec 23.

Cancer Research UK Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, United Kingdom.

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February 2011

Differential effects of wild-type and A53T mutant isoform of alpha-synuclein on the mitochondrial proteome of differentiated SH-SY5Y cells.

Authors:

Kyla Pennington Jianhe Peng Chao-Chun Hung Rosamonde E Banks Philip A Robinson

J Proteome Res 2010 May;9(5):2390-401

Section of Ophthalmology & Neuroscience, Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, University of Leeds, St James's University Hospital, Beckett Street, Leeds LS9 7TF, United Kingdom.

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May 2010

Upregulation of Hic-5 in glomerulosclerosis and its regulation of mesangial cell apoptosis.

Authors:

Nick Hornigold Rachel A Craven Jeff N Keen Tim Johnson Rosamonde E Banks Andrew F Mooney

Kidney Int 2010 Feb 9;77(4):329-38. Epub 2009 Dec 9.

CRUK Clinical Research Centre, St James's University Hospital, Leeds, UK.

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February 2010

Analysis of VHL Gene Alterations and their Relationship to Clinical Parameters in Sporadic Conventional Renal Cell Carcinoma.

Authors:

Alison C Young Rachel A Craven Dena Cohen Claire Taylor Christopher Booth Patricia Harnden David A Cairns Dewi Astuti Walter Gregory Eamonn R Maher Margaret A Knowles Adrian Joyce Peter J Selby Rosamonde E Banks

Clin Cancer Res 2009 Dec;15(24):7582-7592

Authors' Affiliations: Cancer Research UK Clinical Centre, Cancer Research UK Mutation Detection Facility, and Pyrah Department of Urology, St James's University Hospital, and Clinical Trials Research Unit, University of Leeds, Leeds, United Kingdom; and Cancer Research UK Renal Molecular Oncology Group, University of Birmingham, Edgbaston, United Kingdom.

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December 2009

Application of proteomic analysis to the study of renal diseases.

Authors:

Matthew P Welberry Smith Rosamonde E Banks Steven L Wood Andrew J P Lewington Peter J Selby

Nat Rev Nephrol 2009 Dec 27;5(12):701-12. Epub 2009 Oct 27.

Department of Renal Medicine, St James's University Hospital, Leeds, UK.

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December 2009

Proteomic analysis of increased Parkin expression and its interactants provides evidence for a role in modulation of mitochondrial function.

Authors:

Eleanor J Davison Kyla Pennington Chao-Chun Hung Jianhe Peng Rumana Rafiq Antje Ostareck-Lederer Dirk H Ostareck Helen C Ardley Rosamonde E Banks Philip A Robinson

Proteomics 2009 Sep;9(18):4284-97

Section of Ophthalmology and Neuroscience, Leeds Institute for Molecular Medicine, Wellcome Trust Brenner Building, St. James's University Hospital, Leeds, UK.

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September 2009

Changes in the urinary proteome post-operatively in renal cancer patients - a reflection of tumour or kidney removal?

Authors:

Sheryl H Sim David A Cairns David N Perkins Jianhe Peng Anthea J Stanley Douglas Thompson Andrew Lewington Peter J Selby Rosamonde E Banks

Proteomics Clin Appl 2009 Sep;3(9):1112-22

Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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September 2009

Proteomic identification of differentially expressed plasma membrane proteins in renal cell carcinoma by stable isotope labelling of a von Hippel-Lindau transfectant cell line model.

Authors:

Vassilis Aggelis Rachel A Craven Jianhe Peng Patricia Harnden David A Cairns Eamonn R Maher Robert Tonge Peter J Selby Rosamonde E Banks

Proteomics 2009 Apr;9(8):2118-30

Cancer Research UK Clinical Centre, St. James's University Hospital, Leeds, UK.

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April 2009

Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting.

Authors:

Niroshini J Nirmalan Patricia Harnden Peter J Selby Rosamonde E Banks

J Pathol 2009 Mar;217(4):497-506

Clinical and Biomedical Proteomics Group, Cancer Research UK Clinical Centre, Leeds, UK.

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March 2009

Using the protein chip interface with quadrupole time-of-flight mass spectrometry to directly identify peaks in SELDI profiles--initial evaluation using low molecular weight serum peaks.

Authors:

Jianhe Peng Anthea J Stanley David Cairns Peter J Selby Rosamonde E Banks

Proteomics 2009 Jan;9(2):492-8

Cancer Research UK Clinical Centre, St James's University Hospital, Leeds, UK.

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January 2009

Integrated multi-level quality control for proteomic profiling studies using mass spectrometry.

Authors:

David A Cairns David N Perkins Anthea J Stanley Douglas Thompson Jennifer H Barrett Peter J Selby Rosamonde E Banks

BMC Bioinformatics 2008 Dec 4;9:519. Epub 2008 Dec 4.

Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, St James's University Hospital, Leeds, UK.

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December 2008

Sample size determination in clinical proteomic profiling experiments using mass spectrometry for class comparison.

Authors:

David A Cairns Jennifer H Barrett Lucinda J Billingham Anthea J Stanley George Xinarianos John K Field Phillip J Johnson Peter J Selby Rosamonde E Banks

Proteomics 2009 Jan;9(1):74-86

Clinical and Biomedical Proteomics Group, Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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January 2009

Serum biomarker discovery in renal cancer using 2-DE and prefractionation by immunodepletion and isoelectric focusing; increasing coverage or more of the same?

Authors:

Naveen S Vasudev Roisean E Ferguson David A Cairns Anthea J Stanley Peter J Selby Rosamonde E Banks

Proteomics 2008 Dec;8(23-24):5074-85

Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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December 2008

Banking of biological fluids for studies of disease-associated protein biomarkers.

Authors:

Anne-Sofie Schrohl Sidse Würtz Elise Kohn Rosamonde E Banks Hans Jørgen Nielsen Fred C G J Sweep Nils Brünner

Mol Cell Proteomics 2008 Oct 1;7(10):2061-6. Epub 2008 Aug 1.

Department of Veterinary Pathobiology, Faculty of Life Sciences, University of Copenhagen, 1870 Frederiksberg C, Denmark.

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October 2008

Mining the archival formalin-fixed paraffin-embedded tissue proteome: opportunities and challenges.

Authors:

Niroshini J Nirmalan Patricia Harnden Peter J Selby Rosamonde E Banks

Mol Biosyst 2008 Jul 14;4(7):712-20. Epub 2008 May 14.

Clinical and Biomedical Proteomics Group, Cancer Research UK Clinical Centre, St James's University Hospital, Beckett Street, Leeds, UK.

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July 2008

Laser capture microdissection for proteome analysis.

Authors:

Rachel A Craven Rosamonde E Banks

Curr Protoc Protein Sci 2003 May;Chapter 22:Unit 22.3

St. James's University Hospital, Leeds, United Kingdom.

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May 2003

Understanding and managing renal cell carcinoma: can proteomic studies contribute to clinical practice?

Authors:

Rachel A Craven Rosamonde E Banks

Contrib Nephrol 2008 ;160:88-106

Cancer Research UK Clinical Centre, St James's University Hospital, Leeds, UK.

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August 2008

Prognostic factors in renal cell carcinoma: association of preoperative sodium concentration with survival.

Authors:

Naveen S Vasudev Janet E Brown Sarah R Brown Rumana Rafiq Ruth Morgan Poulam M Patel Dearbhaile O'Donnell Patricia Harnden Mark Rogers Kim Cocks Kirsty Anderson Alan Paul Ian Eardley Peter J Selby Rosamonde E Banks

Clin Cancer Res 2008 Mar;14(6):1775-81

Cancer Research UK Clinical Center, St James's University Hospital, Leeds, United Kingdom.

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March 2008

Circulating markers of biliary malignancy: opportunities in proteomics?

Authors:

Glenn K Bonney Rachel A Craven Raj Prasad Alan F Melcher Peter J Selby Rosamonde E Banks

Lancet Oncol 2008 Feb;9(2):149-58

Cancer Research UK Clinical Centre, St James's University Hospital, Leeds, UK.

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February 2008

Preanalytical influences in clinical proteomic studies: raising awareness of fundamental issues in sample banking.

Authors:

Rosamonde E Banks

Clin Chem 2008 Jan;54(1):6-7

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January 2008

Proteomic profiling using mass spectrometry--does normalising by total ion current potentially mask some biological differences?

Authors:

David A Cairns Douglas Thompson David N Perkins Anthea J Stanley Peter J Selby Rosamonde E Banks

Proteomics 2008 Jan;8(1):21-7

Clinical and Biomedical Proteomics Group, Cancer Research UK Clinical Centre, Leeds Institute of Molecular Medicine, St. James's University Hospital, Leeds, UK.

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January 2008

Proteomic profiling identifies afamin as a potential biomarker for ovarian cancer.

Clin Cancer Res 2007 Dec;13(24):7370-9

Cancer Research UK Clinical Centre, St James's University Hospital, Leeds, United Kingdom.

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December 2007

Proteomic evaluation of pathways associated with dexamethasone-mediated apoptosis and resistance in multiple myeloma.

Authors:

Karen S Rees-Unwin Rachel A Craven Emma Davenport Sarah Hanrahan Nicholas F Totty Ann M Dring Rosamonde E Banks Gareth J Morgan Faith E Davies

Br J Haematol 2007 Nov;139(4):559-67

Academic Unit of Haematology and Oncology, School of Medicine, Algernon Firth Building, University of Leeds, Leeds, UK.

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November 2007

Ovarian cancer is associated with changes in glycosylation in both acute-phase proteins and IgG.

Authors:

Radka Saldova Louise Royle Catherine M Radcliffe Umi M Abd Hamid Rachel Evans James N Arnold Rosamonde E Banks Richard Hutson David J Harvey Robin Antrobus Stefana M Petrescu Raymond A Dwek Pauline M Rudd

Glycobiology 2007 Dec 20;17(12):1344-56. Epub 2007 Sep 20.

Department of Biochemistry, Oxford Glycobiology Institute, University of Oxford, Oxford, UK.

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December 2007

Key clinical issues in renal cancer: a challenge for proteomics.

Authors:

Rosamonde E Banks Rachel A Craven Patricia Harnden Sanjeev Madaan Adrian Joyce Peter J Selby

World J Urol 2007 Dec 25;25(6):537-56. Epub 2007 Aug 25.

Cancer Research UK Clinical Centre, St James's University Hospital, Leeds LS9 7TF, UK.

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December 2007

Impact of preanalytical variables on the analysis of biological fluids in proteomic studies.

Authors:

Roisean E Ferguson Denis F Hochstrasser Rosamonde E Banks

Proteomics Clin Appl 2007 Aug 10;1(8):739-46. Epub 2007 Jul 10.

Cancer Research UK Clinical Centre, St. James's University Hospital, University of Leeds, Leeds, UK.

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August 2007

Clinical proteomics: A need to define the field and to begin to set adequate standards.

Proteomics Clin Appl 2007 Feb 22;1(2):148-56. Epub 2007 Jan 22.

Mosaiques Diagnostics, Hannover, Germany.

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February 2007

Urinary biomarker profiling in transitional cell carcinoma.

Authors:

Nicholas P Munro David A Cairns Paul Clarke Mark Rogers Anthea J Stanley Jennifer H Barrett Patricia Harnden Douglas Thompson Ian Eardley Rosamonde E Banks Margaret A Knowles

Int J Cancer 2006 Dec;119(11):2642-50

Cancer Research UK Clinical Centre, St. James's University Hospital, Beckett Street, Leeds, United Kingdom.

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December 2006

Proteomic identification of a role for the von Hippel Lindau tumour suppressor in changes in the expression of mitochondrial proteins and septin 2 in renal cell carcinoma.

Authors:

Rachel A Craven Sarah Hanrahan Nick Totty Patricia Harnden Anthea J Stanley Eamonn R Maher Adrian L Harris William S Trimble Peter J Selby Rosamonde E Banks

Proteomics 2006 Jul;6(13):3880-93

Cancer Research UK Clinical Centre, St. James's University Hospital, Beckett Street, Leeds, UK.

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July 2006

Proteomic analysis of primary cell lines identifies protein changes present in renal cell carcinoma.

Authors:

Rachel A Craven Anthea J Stanley Sarah Hanrahan James Dods Richard Unwin Nick Totty Patricia Harnden Ian Eardley Peter J Selby Rosamonde E Banks

Proteomics 2006 May;6(9):2853-64

Cancer Research UK Clinical Centre, St. James's University Hospital, Leeds, UK.

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May 2006

Genetic and epigenetic analysis of von Hippel-Lindau (VHL) gene alterations and relationship with clinical variables in sporadic renal cancer.

Authors:

Rosamonde E Banks Prasanna Tirukonda Claire Taylor Nick Hornigold Dewi Astuti Dena Cohen Eamonn R Maher Anthea J Stanley Patricia Harnden Adrian Joyce Margaret Knowles Peter J Selby

Cancer Res 2006 Feb;66(4):2000-11

Cancer Research UK Clinical Centre, St. James's University Hospital, Leeds, United Kingdom.

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February 2006

Influences of blood sample processing on low-molecular-weight proteome identified by surface-enhanced laser desorption/ionization mass spectrometry.

Authors:

Rosamonde E Banks Anthea J Stanley David A Cairns Jennifer H Barrett Paul Clarke Douglas Thompson Peter J Selby

Clin Chem 2005 Sep 7;51(9):1637-49. Epub 2005 Jul 7.

Cancer Research UK Clinical Centre, St James's University Hospital, Leeds, UK.

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September 2005

Tumor suppressor activity and epigenetic inactivation of hepatocyte growth factor activator inhibitor type 2/SPINT2 in papillary and clear cell renal cell carcinoma.

Authors:

Mark R Morris Dean Gentle Mahera Abdulrahman Esther N Maina Kunal Gupta Rosamonde E Banks Michael S Wiesener Takeshi Kishida Masahiro Yao Bin Teh Farida Latif Eamonn R Maher

Cancer Res 2005 Jun;65(11):4598-606

Cancer Research UK Renal Molecular Oncology Group, University of Birmingham, Edgbaston, United Kingdom.

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June 2005

Resistance to the tubulin-binding agents in renal cell carcinoma: no mutations in the class I beta-tubulin gene but changes in tubulin isotype protein expression.

Authors:

Roisean E Ferguson Claire Taylor Anthea Stanley Elizabeth Butler Adrian Joyce Patricia Harnden Poulam M Patel Peter J Selby Rosamonde E Banks

Clin Cancer Res 2005 May;11(9):3439-45

Cancer Research UK Clinical Centre at Leeds, United Kingdom.

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May 2005

Identification of novel VHL target genes and relationship to hypoxic response pathways.

Authors:

Esther N Maina Mark R Morris Malgorzata Zatyka Raju R Raval Rosamonde E Banks Frances M Richards Claire M Johnson Eamonn R Maher

Oncogene 2005 Jun;24(28):4549-58

Section of Medical & Molecular Genetics, Department of Paediatrics and Child Health, University of Birmingham, The Medical School, Birmingham B15 2TT, UK.

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June 2005