Rongling Wu

Rongling Wu

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Rongling Wu

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Genetic Association of Pulmonary Surfactant Protein Genes, SFTPA1, SFTPA2, SFTPB, SFTPC, and SFTPD With Cystic Fibrosis.

Front Immunol 2018 2;9:2256. Epub 2018 Oct 2.

Department of Pediatrics, Center for Host Defense, Inflammation, and Lung Disease (CHILD) Research, Pennsylvania State University, Hershey, PA, United States.

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http://dx.doi.org/10.3389/fimmu.2018.02256DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6175982PMC
September 2019

np QTL: networking phenotypic plasticity quantitative trait loci across heterogeneous environments.

Plant J 2019 Aug 25;99(4):796-806. Epub 2019 May 25.

Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.

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http://dx.doi.org/10.1111/tpj.14355DOI Listing
August 2019

A unified DNA sequence and non-DNA sequence mapping model of complex traits.

Plant J 2019 Aug 8;99(4):784-795. Epub 2019 Jun 8.

Center for Statistical Genetics, Departments of Public Health Sciences and Statistics, Pennsylvania State University, Hershey, PA, 17033, USA.

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https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14354
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http://dx.doi.org/10.1111/tpj.14354DOI Listing
August 2019

Mapping Covariation Quantitative Trait Loci That Control Organ Growth and Whole-Plant Biomass.

Front Plant Sci 2019 4;10:719. Epub 2019 Jun 4.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.3389/fpls.2019.00719DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558071PMC
June 2019

The Genomic Landscape of Crossover Interference in the Desert Tree .

Front Genet 2019 15;10:440. Epub 2019 May 15.

Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.3389/fgene.2019.00440DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6530421PMC
May 2019

Funmap2: an R package for QTL mapping using longitudinal phenotypes.

PeerJ 2019 31;7:e7008. Epub 2019 May 31.

College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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https://peerj.com/articles/7008
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http://dx.doi.org/10.7717/peerj.7008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6546077PMC
May 2019

Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome.

Am J Med Genet B Neuropsychiatr Genet 2019 Apr 6;180(3):186-203. Epub 2019 Feb 6.

Division of Endocrinology, Diabetes, and Metabolic Disease, Department of Medicine, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1002/ajmg.b.32712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492942PMC
April 2019

An Adaptive Multivariate Two-Sample Test With Application to Microbiome Differential Abundance Analysis.

Front Genet 2019 24;10:350. Epub 2019 Apr 24.

Department of Public Health Sciences, Pennsylvania State University, Hershey, PA, United States.

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http://dx.doi.org/10.3389/fgene.2019.00350DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6491633PMC
April 2019

Functional mapping of N deficiency-induced response in wheat yield-component traits by implementing high-throughput phenotyping.

Plant J 2019 Mar 30;97(6):1105-1119. Epub 2019 Jan 30.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14186
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http://dx.doi.org/10.1111/tpj.14186DOI Listing
March 2019

A dissection model for mapping complex traits.

Plant J 2019 Mar 12;97(6):1168-1182. Epub 2019 Feb 12.

Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing, 100083, China.

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https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14185
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http://dx.doi.org/10.1111/tpj.14185DOI Listing
March 2019

A unified mapping framework of multifaceted pharmacodynamic responses to hypertension interventions.

Drug Discov Today 2019 03 25;24(3):883-889. Epub 2019 Jan 25.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA 17033, USA; Center for Statistical Genetics, Departments of Public Health Sciences and Statistics, Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S13596446183038
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http://dx.doi.org/10.1016/j.drudis.2019.01.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6492935PMC
March 2019

The genetic architecture of heterochrony as a quantitative trait: lessons from a computational model.

Brief Bioinform 2018 11;19(6):1430-1439

Center for Computational Biology at Beijing Forestry University.

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http://dx.doi.org/10.1093/bib/bbx056DOI Listing
November 2018

Mapping genes for drug chronotherapy.

Drug Discov Today 2018 11 28;23(11):1883-1888. Epub 2018 Jun 28.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA 17033, USA; Center for Statistical Genetics, Departments of Public Health Sciences and Statistics, Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.drudis.2018.06.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6263156PMC
November 2018

How Long Non-Coding RNAs and MicroRNAs Mediate the Endogenous RNA Network of Head and Neck Squamous Cell Carcinoma: a Comprehensive Analysis.

Cell Physiol Biochem 2018 3;50(1):332-341. Epub 2018 Oct 3.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.1159/000494009DOI Listing
November 2018

An Ultrahigh-Dimensional Mapping Model of High-order Epistatic Networks for Complex Traits.

Curr Genomics 2018 Aug;19(5):384-394

Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA17033, USA.

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http://dx.doi.org/10.2174/1389202919666171218162210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030858PMC
August 2018

A mapping framework of competition-cooperation QTLs that drive community dynamics.

Nat Commun 2018 08 1;9(1):3010. Epub 2018 Aug 1.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, 100083, Beijing, China.

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http://dx.doi.org/10.1038/s41467-018-05416-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6070507PMC
August 2018

How trees allocate carbon for optimal growth: insight from a game-theoretic model.

Brief Bioinform 2018 07;19(4):593-602

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.1093/bib/bbx003DOI Listing
July 2018

Methodological implementation of mixed linear models in multi-locus genome-wide association studies.

Brief Bioinform 2018 07;19(4):700-712

Public Health Sciences and Statistics and Center for Statistical Genetics, Pennsylvania State University, Hershey, PA, USA.

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http://dx.doi.org/10.1093/bib/bbw145DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6054291PMC
July 2018

HpQTL: a geometric morphometric platform to compute the genetic architecture of heterophylly.

Brief Bioinform 2018 07;19(4):603-612

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.1093/bib/bbx011DOI Listing
July 2018

fGWAS: An R package for genome-wide association analysis with longitudinal phenotypes.

J Genet Genomics 2018 07 10;45(7):411-413. Epub 2018 Jul 10.

Department of Biostatistics, Yale School of Public Health, New Haven, CT 06510, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2018.06.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6179436PMC
July 2018

Association of the haem oxygenase-1 gene with inflammatory bowel disease.

Swiss Med Wkly 2017 2;147:w14456. Epub 2017 Aug 2.

CHILD Research Center, Department of Pediatrics, The Pennsylvania State University, College of Medicine, Hershey, PA, United States of America; Department of Obstetrics and Gynecology, The Pennsylvania State University, College of Medicine, Hershey, PA, U.

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http://dx.doi.org/10.4414/smw.2017.14456DOI Listing
June 2018

Breastfeeding and Future Maternal Health-No Causal Evidence.

JAMA Intern Med 2018 06;178(6):869-870

Division of Endocrinology, Diabetes, and Metabolic Disease, Translational Medicine, Department of Medicine, Sidney Kimmel Medical College, Thomas Jefferson University, Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1001/jamainternmed.2018.1806DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5992486PMC
June 2018

An ecophysiologically based mapping model identifies a major pleiotropic QTL for leaf growth trajectories of Phaseolus vulgaris.

Plant J 2018 Jun 8. Epub 2018 Jun 8.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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http://doi.wiley.com/10.1111/tpj.13986
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http://dx.doi.org/10.1111/tpj.13986DOI Listing
June 2018

Mapping morphological shape as a high-dimensional functional curve.

Brief Bioinform 2018 05;19(3):461-471

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China 100083.

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http://dx.doi.org/10.1093/bib/bbw111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952977PMC
May 2018

The genetic architecture of floral traits in the woody plant Prunus mume.

Nat Commun 2018 04 27;9(1):1702. Epub 2018 Apr 27.

Beijing Key Laboratory of Ornamental Plants Germplasm Innovation & Molecular Breeding, National Engineering Research Center for Floriculture, Beijing Laboratory of Urban and Rural Ecological Environment, School of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China.

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http://www.nature.com/articles/s41467-018-04093-z
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http://dx.doi.org/10.1038/s41467-018-04093-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5923208PMC
April 2018

Transcriptome profiling of PeCRY1 transgenic Populus tomentosa.

Genes Genomics 2018 04 25;40(4):349-359. Epub 2017 Nov 25.

Center for Computational Biology, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.1007/s13258-017-0631-7DOI Listing
April 2018

Hyperacute Monocyte Gene Response Patterns Are Associated With Lower Extremity Vein Bypass Graft Failure.

Circ Genom Precis Med 2018 03;11(3):e001970

From the Malcom Randall Veterans Affairs Medical Center, Gainesville, FL (J.P.R., K.M.D., J.M.R., K.A.O., S.A.B.); Department of Surgery (J.P.R., K.M.D., J.M.R., K.A.O., L.L.M., S.A.B.) and Department of Molecular Genetics and Microbiology (H.V.B.), University of Florida, Gainesville; Department of Biostatistics, Rutgers University, New Brunswick, NJ (Y.W.); Center for Statistical Genetics, Pennsylvania State University, Hershey (R.W.); and Department of Surgery, University of South Florida, Tampa (P.R.N.).

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http://dx.doi.org/10.1161/CIRCGEN.117.001970DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5854207PMC
March 2018

Two-stage identification of SNP effects on dynamic poplar growth.

Plant J 2018 01 28;93(2):286-296. Epub 2017 Dec 28.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100081, China.

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http://dx.doi.org/10.1111/tpj.13777DOI Listing
January 2018

Phylogeography Study of the Siberian Apricot ( L.) in Northern China Assessed by Chloroplast Microsatellite and DNA Makers.

Front Plant Sci 2017 21;8:1989. Epub 2017 Nov 21.

Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.3389/fpls.2017.01989DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5702509PMC
November 2017

Bacterial Genetic Architecture of Ecological Interactions in Co-culture by GWAS-Taking and as an Example.

Front Microbiol 2017 27;8:2332. Epub 2017 Nov 27.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://journal.frontiersin.org/article/10.3389/fmicb.2017.02
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http://dx.doi.org/10.3389/fmicb.2017.02332DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712204PMC
November 2017

Landscaping Crossover Interference Across a Genome.

Trends Plant Sci 2017 10 16;22(10):894-907. Epub 2017 Aug 16.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tplants.2017.06.008DOI Listing
October 2017

A High-Density Genetic Map of Tetraploid Salix matsudana Using Specific Length Amplified Fragment Sequencing (SLAF-seq).

PLoS One 2016 21;11(6):e0157777. Epub 2016 Jun 21.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0157777PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915623PMC
July 2017

Genetic association and epistatic interaction of the interleukin-10 signaling pathway in pediatric inflammatory bowel disease.

World J Gastroenterol 2017 Jul;23(27):4897-4909

Zhenwu Lin, Yunhua Wang, Neal J Thomas, Joanna Floros, CHILD Research, Department of Pediatrics, the Pennsylvania State University, College of Medicine, Hershey, PA 17033, United States.

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http://dx.doi.org/10.3748/wjg.v23.i27.4897DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5526760PMC
July 2017

The genetic architecture of shoot-root covariation during seedling emergence of a desert tree, Populus euphratica.

Plant J 2017 Jun 9;90(5):918-928. Epub 2017 Apr 9.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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http://dx.doi.org/10.1111/tpj.13518DOI Listing
June 2017

The genetic architecture of growth traits in under salt stress.

Hortic Res 2017 14;4:17024. Epub 2017 Jun 14.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.

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http://dx.doi.org/10.1038/hortres.2017.24DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5469942PMC
June 2017

Plant grafting: how genetic exchange promotes vascular reconnection.

New Phytol 2017 Apr 19;214(1):56-65. Epub 2016 Dec 19.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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http://doi.wiley.com/10.1111/nph.14383
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http://dx.doi.org/10.1111/nph.14383DOI Listing
April 2017

iFORM/eQTL: an ultrahigh-dimensional platform for inferring the global genetic architecture of gene transcripts.

Brief Bioinform 2017 03;18(2):250-259

Division of Biostatistics and Bioinformatics, Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA.

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http://dx.doi.org/10.1093/bib/bbw014DOI Listing
March 2017

Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition.

Phys Life Rev 2017 03 9;20:126-137. Epub 2016 Nov 9.

Division of Biostatistics and Bioinformatics, Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.plrev.2016.11.001DOI Listing
March 2017

Integration of epigenetic game theory and developmental principles: Reply to comments on "Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition".

Phys Life Rev 2017 03 10;20:166-169. Epub 2017 Feb 10.

Division of Biostatistics and Bioinformatics, Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15710645173002
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http://dx.doi.org/10.1016/j.plrev.2017.01.029DOI Listing
March 2017

Novel Mutation Sites in the Development of Vancomycin- Intermediate Resistance in .

Front Microbiol 2016 10;7:2163. Epub 2017 Jan 10.

College of Biological Sciences and Biotechnology, Beijing Forestry UniversityBeijing, China; Center for Computational Biology, Beijing Forestry UniversityBeijing, China; Center for Statistical Genetics, Pennsylvania State UniversityHershey, PA, USA.

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http://dx.doi.org/10.3389/fmicb.2016.02163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5222870PMC
January 2017

Computational identification of genes modulating stem height-diameter allometry.

Plant Biotechnol J 2016 12 15;14(12):2254-2264. Epub 2016 Jun 15.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, China.

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http://dx.doi.org/10.1111/pbi.12579DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5103235PMC
December 2016

A computational framework for mapping the timing of vegetative phase change.

New Phytol 2016 07 9;211(2):750-60. Epub 2016 Mar 9.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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http://dx.doi.org/10.1111/nph.13907DOI Listing
July 2016

Molecular dynamics investigations of regioselectivity of anionic/aromatic substrates by a family of enzymes: a case study of diclofenac binding in CYP2C isoforms.

Phys Chem Chem Phys 2016 Jun;18(26):17428-39

Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China and Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA 17033, USA.

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http://dx.doi.org/10.1039/c6cp01128dDOI Listing
June 2016

Integrating Evolutionary Game Theory into Mechanistic Genotype-Phenotype Mapping.

Trends Genet 2016 05 24;32(5):256-268. Epub 2016 Mar 24.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, Departments of Public Health Sciences and Statistics, Pennsylvania State University, Hershey, PA 17033, USA; Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA 17033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tig.2016.02.004DOI Listing
May 2016

Molecular Cloning and Functional Analysis of UV RESISTANCE LOCUS 8 (PeUVR8) from Populus euphratica.

PLoS One 2015 14;10(7):e0132390. Epub 2015 Jul 14.

Center for Computational Biology, College of Biological Science and Technologies, Beijing Forestry University, Beijing, 100083, China; Center for Statistical Genetics, The Pennsylvania State University, Hershey, Pennsylvania, 17033, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132390PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4501546PMC
April 2016

Cloning of the cryptochrome-encoding PeCRY1 gene from Populus euphratica and functional analysis in Arabidopsis.

PLoS One 2014 12;9(12):e115201. Epub 2014 Dec 12.

Center for Computational Biology, College of Biological Science and Technology, Beijing Forestry University, Beijing 100083, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0115201PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4264880PMC
March 2016

Systems mapping for hematopoietic progenitor cell heterogeneity.

PLoS One 2015 13;10(5):e0126937. Epub 2015 May 13.

Center for Computational Biology, Beijing Forestry University, Beijing, People's Republic of China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0126937PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4430299PMC
February 2016

Constructing a linkage-linkage disequilibrium map using dominant-segregating markers.

DNA Res 2016 Feb 29;23(1):1-10. Epub 2015 Nov 29.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA 17033, USA

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http://dx.doi.org/10.1093/dnares/dsv031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755522PMC
February 2016

A block mixture model to map eQTLs for gene clustering and networking.

Sci Rep 2016 Feb 19;6:21193. Epub 2016 Feb 19.

Department of Biostatistics, University of Texas School of Public Health, Houston, TX 77030, USA.

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http://dx.doi.org/10.1038/srep21193DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4759821PMC
February 2016

Computational Prediction of RNA-Binding Proteins and Binding Sites.

Int J Mol Sci 2015 Nov 3;16(11):26303-17. Epub 2015 Nov 3.

Center for Computational Biology, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.

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http://dx.doi.org/10.3390/ijms161125952DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4661811PMC
November 2015

Plastic expression of heterochrony quantitative trait loci (hQTLs) for leaf growth in the common bean (Phaseolus vulgaris).

New Phytol 2015 Aug 27;207(3):872-82. Epub 2015 Mar 27.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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http://doi.wiley.com/10.1111/nph.13386
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http://dx.doi.org/10.1111/nph.13386DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6681149PMC
August 2015

A unifying experimental design for dissecting tree genomes.

Trends Plant Sci 2015 Aug 17;20(8):473-6. Epub 2015 Jun 17.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.tplants.2015.05.012DOI Listing
August 2015

Systematic functional genomics resource and annotation for poplar.

IET Syst Biol 2015 Aug;9(4):164-71

Center for Computational Biology, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, People's Republic of China.

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http://dx.doi.org/10.1049/iet-syb.2014.0047DOI Listing
August 2015

T2D and Depression Risk Gene Proteasome Modulator 9 is Linked to Insomnia.

Sci Rep 2015 Jul 13;5:12032. Epub 2015 Jul 13.

1] Division of Endocrinology, Diabetes, and Metabolism, Department of Medicine, University of Florida College of Medicine, Jacksonville, FL [2] Department of Public Health Sciences, Penn State College of Medicine, Hershey, PA, USA [3] Center for Biotechnology and Department of Biology, Temple University's College of Science &Technology, Philadelphia, PA, USA [4] Molecular Biology Laboratory, Bios Biotech Multi-Diagnostic Health Center, Rome, Italy.

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http://dx.doi.org/10.1038/srep12032DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4648424PMC
July 2015

Mapping complex traits as a dynamic system.

Phys Life Rev 2015 Jun 20;13:155-85. Epub 2015 Feb 20.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, Departments of Public Health Sciences and Statistics, The Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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http://dx.doi.org/10.1016/j.plrev.2015.02.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5467743PMC
June 2015

Toward the practical utility of systems mapping: Reply to comments on "Mapping complex traits as a dynamic system".

Phys Life Rev 2015 Jun 7;13:198-201. Epub 2015 May 7.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, Departments of Public Health Sciences and Statistics, The Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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June 2015

High-level genetic diversity and complex population structure of Siberian apricot (Prunus sibirica L.) in China as revealed by nuclear SSR markers.

PLoS One 2014 7;9(2):e87381. Epub 2014 Feb 7.

National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3917850PMC
May 2015

Functional mapping of seasonal transition in perennial plants.

Brief Bioinform 2015 May 30;16(3):526-35. Epub 2014 Jul 30.

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May 2015

De novo assembly and characterization of the fruit transcriptome of Chinese jujube (Ziziphus jujuba Mill.) Using 454 pyrosequencing and the development of novel tri-nucleotide SSR markers.

PLoS One 2014 3;9(9):e106438. Epub 2014 Sep 3.

National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China; Center for Computational Biology, Beijing Forestry University, Beijing, China.

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May 2015

An overview of the prediction of protein DNA-binding sites.

Int J Mol Sci 2015 Mar 6;16(3):5194-215. Epub 2015 Mar 6.

Center for Computational Biology, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.

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March 2015

A reciprocal cross design to map the genetic architecture of complex traits in apomictic plants.

New Phytol 2015 Feb 30;205(3):1360-7. Epub 2014 Oct 30.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China.

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February 2015

Allotetraploid and autotetraploid models of linkage analysis.

Brief Bioinform 2015 Jan 30;16(1):32-8. Epub 2013 Oct 30.

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January 2015

Isolation and characterization of microsatellite markers and analysis of genetic diversity in Chinese jujube (Ziziphus jujuba Mill.).

PLoS One 2014 16;9(6):e99842. Epub 2014 Jun 16.

National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, Center for Computational Biology, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, China.

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January 2015

Modeling Expression Plasticity of Genes that Differentiate Drug-sensitive from Drug-resistant Cells to Chemotherapeutic Treatment.

Curr Genomics 2014 Oct;15(5):349-56

Department of Statistics, Pennsylvania State University, State College, PA 16802, USA ; Center for Statistical Genetics, Pennsylvania State University, Hershey, PA 17033, USA.

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October 2014

A skellam model to identify differential patterns of gene expression induced by environmental signals.

BMC Genomics 2014 Sep 8;15:772. Epub 2014 Sep 8.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4167515PMC
September 2014

Systems mapping of genes controlling chemotherapeutic drug efficiency for cancer stem cells.

Drug Discov Today 2014 Aug 4;19(8):1125-30. Epub 2014 Jan 4.

Center for Computational Biology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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August 2014

A model framework for identifying genes that guide the evolution of heterochrony.

Mol Biol Evol 2014 Aug 8;31(8):2238-47. Epub 2014 May 8.

Center for Computational Biology, College of Biological Sciences and Technology, Beijing Forestry University, Beijing, ChinaCenter for Statistical Genetics, The Pennsylvania State University

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August 2014

A model for computing genes governing marital dissolution through sentimental dynamics.

J Theor Biol 2014 Jul 21;353:24-33. Epub 2014 Feb 21.

Center for Computational Biology, Beijing Forestry University, Beijing 100083, China; Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA 17033, USA. Electronic address:

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July 2014

A computational algorithm for functional clustering of proteome dynamics during development.

Curr Genomics 2014 Jun;15(3):237-43

Center for Statistical Genetics, Pennsylvania State University, Hershey, PA 17033, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4064563PMC
June 2014

Deep-sequencing transcriptome analysis of low temperature perception in a desert tree, Populus euphratica.

BMC Genomics 2014 May 1;15:326. Epub 2014 May 1.

National Engineering Laboratory for Tree Breeding, Beijing 100083, China.

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May 2014

A synthetic framework for modeling the genetic basis of phenotypic plasticity and its costs.

New Phytol 2014 Jan 13;201(1):357-65. Epub 2013 Sep 13.

Center for Computational Biology, Beijing Forestry University, Beijing, 100083, China.

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January 2014

Modeling phenotypic plasticity in growth trajectories: a statistical framework.

Evolution 2014 Jan 20;68(1):81-91. Epub 2013 Sep 20.

Center for Computational Biology, Beijing Forestry University, Beijing, 100083, China.

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January 2014

A FAST ALGORITHM FOR DETECTING GENE-GENE INTERACTIONS IN GENOME-WIDE ASSOCIATION STUDIES.

Ann Appl Stat 2014;8(4):2292-2318

Center for Statistical Genetics Pennsylvania State University Hershey, Pennsylvania 17033 USA

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January 2014

Feature Selection for Varying Coefficient Models With Ultrahigh Dimensional Covariates.

J Am Stat Assoc 2014 Jan;109(505):266-274

Professor, Department of Public Health Sciences, Penn State Hershey College of Medicine, Hershey, PA 17033.

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January 2014

Theoretical Biology and Medical Modelling: ensuring continued growth and future leadership.

Theor Biol Med Model 2013 Jul 11;10:43. Epub 2013 Jul 11.

Department of Global Health Policy, Graduate School of Medicine, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo, Japan.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3710265PMC
July 2013

Systems mapping of metabolic genes through control theory.

Adv Drug Deliv Rev 2013 Jun 17;65(7):918-28. Epub 2013 Apr 17.

Division of Biostatistics and Bioinformatics, Pennsylvania State University, Hershey, PA 17033, USA.

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June 2013

Mathematical modeling of systems pharmacogenomics towards personalized drug delivery. Preface.

Adv Drug Deliv Rev 2013 Jun 27;65(7):903-4. Epub 2013 May 27.

Center for Statistical Genetics, The Pennsylvania State University, Hershey, PA 17033, USA.

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June 2013