Ronald W Davis

Ronald W Davis

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Ronald W Davis

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The IDO Metabolic Trap Hypothesis for the Etiology of ME/CFS.

Diagnostics (Basel) 2019 Jul 26;9(3). Epub 2019 Jul 26.

Integrative Bioinformatics Inc., Mountain View, CA 94041, USA.

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http://dx.doi.org/10.3390/diagnostics9030082DOI Listing
July 2019

A biosensor-based approach reveals links between efflux pump expression and cell cycle regulation in pleiotropic drug resistance of yeast.

J Biol Chem 2019 01 4;294(4):1257-1266. Epub 2018 Dec 4.

From the Department of Biochemistry, Stanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, California 94304

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http://dx.doi.org/10.1074/jbc.RA118.003904DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349095PMC
January 2019

Should Exercise Be Prescribed Differently Between Women and Men? An Emphasis on Women Diagnosed With Parkinson's Disease.

Front Physiol 2018 2;9:1040. Epub 2018 Aug 2.

Department of Kinesiology, Texas Woman's University, Denton, TX, United States.

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http://dx.doi.org/10.3389/fphys.2018.01040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6082968PMC
August 2018

The Effect of Whole-Body Vibration on Lower-Body Resistance Detraining in College-Age Women.

Res Q Exerc Sport 2018 Mar 8;89(1):57-65. Epub 2017 Dec 8.

b Texas Woman's University.

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http://dx.doi.org/10.1080/02701367.2017.1401210DOI Listing
March 2018

Template-Independent Enzymatic Oligonucleotide Synthesis (TiEOS): Its History, Prospects, and Challenges.

Biochemistry 2018 03 13;57(12):1821-1832. Epub 2018 Mar 13.

Stanford Genome Technology Center, Department of Biochemistry , Stanford University , Palo Alto , California 94304 , United States.

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http://dx.doi.org/10.1021/acs.biochem.7b00937DOI Listing
March 2018

Streamlined circular proximity ligation assay provides high stringency and compatibility with low-affinity antibodies.

Proc Natl Acad Sci U S A 2018 01 16;115(5):E925-E933. Epub 2018 Jan 16.

Stanford Genome Technology Center, Stanford University School of Medicine, Palo Alto, CA 94304;

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http://dx.doi.org/10.1073/pnas.1718283115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798375PMC
January 2018

Nucleotide-Specific Contrast for DNA Sequencing by Electron Spectroscopy.

PLoS One 2016 5;11(5):e0154707. Epub 2016 May 5.

Stanford Genome Technology Center, Stanford University School of Medicine, 855 California Avenue, Palo Alto, CA, 94304, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0154707PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858156PMC
July 2017

Transparent Er-Doped YO Ceramics with Long Optical Coherence Lifetime.

ACS Omega 2017 Jul 19;2(7):3739-3744. Epub 2017 Jul 19.

Corning Incorporated, Sullivan Park, Corning, New York 14830, United States.

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http://dx.doi.org/10.1021/acsomega.7b00541DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6641433PMC
July 2017

Multifunctional, inexpensive, and reusable nanoparticle-printed biochip for cell manipulation and diagnosis.

Proc Natl Acad Sci U S A 2017 02 6;114(8):E1306-E1315. Epub 2017 Feb 6.

Department of Biochemistry, School of Medicine, Stanford University, Stanford, CA 94304;

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http://dx.doi.org/10.1073/pnas.1621318114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5338449PMC
February 2017

Identification of Chemical-Genetic Interactions via Parallel Analysis of Barcoded Yeast Strains.

Cold Spring Harb Protoc 2016 09 1;2016(9). Epub 2016 Sep 1.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, Palo Alto, California 94304;

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http://dx.doi.org/10.1101/pdb.prot088054DOI Listing
September 2016

Systematic Mapping of Chemical-Genetic Interactions in Saccharomyces cerevisiae.

Cold Spring Harb Protoc 2016 09 1;2016(9). Epub 2016 Sep 1.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, Palo Alto, California 94304;

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http://dx.doi.org/10.1101/pdb.top077701DOI Listing
September 2016

A Wearable Electrochemical Platform for Noninvasive Simultaneous Monitoring of Ca(2+) and pH.

ACS Nano 2016 07 8;10(7):7216-24. Epub 2016 Jul 8.

Materials Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States.

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http://dx.doi.org/10.1021/acsnano.6b04005DOI Listing
July 2016

Integrating Cell Phone Imaging with Magnetic Levitation (i-LEV) for Label-Free Blood Analysis at the Point-of-Living.

Small 2016 Mar 2;12(9):1222-1229. Epub 2015 Nov 2.

Canary Center at Stanford for Cancer Early Detection, Radiology Department, School of Medicine, Stanford University, CA, USA, 94304.

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http://dx.doi.org/10.1002/smll.201501845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4775401PMC
March 2016

Next-Generation Molecular Testing of Newborn Dried Blood Spots for Cystic Fibrosis.

J Mol Diagn 2016 Mar 1;18(2):267-82. Epub 2016 Feb 1.

Department of Pathology, Stanford University Medical Center, Stanford, California; Stanford Genome Technology Center, Stanford University, Palo Alto, California. Electronic address:

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http://dx.doi.org/10.1016/j.jmoldx.2015.11.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816703PMC
March 2016

Quantitative CRISPR interference screens in yeast identify chemical-genetic interactions and new rules for guide RNA design.

Genome Biol 2016 Mar 8;17:45. Epub 2016 Mar 8.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, 3165 Porter Drive, Palo Alto, CA, 94304, USA.

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http://dx.doi.org/10.1186/s13059-016-0900-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4784398PMC
March 2016

A simple method for encapsulating single cells in alginate microspheres allows for direct PCR and whole genome amplification.

PLoS One 2015 17;10(2):e0117738. Epub 2015 Feb 17.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, 3165 Porter Drive, Palo Alto, CA 94304, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117738PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4331554PMC
January 2016

A hybrid approach of gene sets and single genes for the prediction of survival risks with gene expression data.

PLoS One 2015 1;10(5):e0122103. Epub 2015 May 1.

Stanford Genome Technology Center, Palo Alto, California, United States of America; Massachusetts General Hospital and Shriners Hospital for Children, Boston, Massachusetts, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0122103PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4416884PMC
January 2016

A Rapid, High-Quality, Cost-Effective, Comprehensive and Expandable Targeted Next-Generation Sequencing Assay for Inherited Heart Diseases.

Circ Res 2015 Sep 11;117(7):603-11. Epub 2015 Aug 11.

From the Department of Pathology (K.D.W., E.F., J.O., C.S.), and Department of Biochemistry (P.S., R.W.D.), Stanford Cardiovascular Institute (K.D.W., I.K., A.Z., K.I., J.O., K.S., G.K.L., E.A.A., J.C.W.), Stanford Genome Technology Center (P.S., E.F., R.W.D., C.S.), Department of Medicine, Division of Cardiology (K.S., G.K.L., E.A.A., J.C.W.), Stanford Adult Congenital Heart Disease Clinic (J.C.W., G.K.L.), and Department of Radiology (J.C.W.), Stanford University, CA.

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https://www.ahajournals.org/doi/10.1161/CIRCRESAHA.115.30672
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http://dx.doi.org/10.1161/CIRCRESAHA.115.306723DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4568077PMC
September 2015

Multitarget, quantitative nanoplasmonic electrical field-enhanced resonating device (NE2RD) for diagnostics.

Proc Natl Acad Sci U S A 2015 Aug 20;112(32):E4354-63. Epub 2015 Jul 20.

Demirci Bio-Acoustic-Microelectromechanical Systems in Medicine (BAMM) Laboratory, Canary Center at Stanford for Cancer Early Detection, Radiology Department, Stanford University School of Medicine, Palo Alto, CA 94304; Department of Electrical Engineering (By courtesy), Stanford University, Stanford, CA 94305

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http://dx.doi.org/10.1073/pnas.1510824112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4538635PMC
August 2015

Magnetic levitation of single cells.

Proc Natl Acad Sci U S A 2015 Jul 29;112(28):E3661-8. Epub 2015 Jun 29.

Canary Center at Stanford for Cancer Early Detection, Radiology Department, School of Medicine, Stanford University, Stanford, CA 94304;

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http://dx.doi.org/10.1073/pnas.1509250112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4507238PMC
July 2015

RASA: Robust Alternative Splicing Analysis for Human Transcriptome Arrays.

Sci Rep 2015 Jul 6;5:11917. Epub 2015 Jul 6.

1] Stanford Genome Technology Center, Palo Alto, CA 94304, USA [2] Massachusetts General Hospital and Shriners Hospital for Children, Boston, MA 02114, USA.

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http://dx.doi.org/10.1038/srep11917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4491729PMC
July 2015

Robust Optimization of Biological Protocols.

Technometrics 2015;57(2):234-244. Epub 2015 Jul 13.

Department of Biochemistry and Genetics and Stanford Genome Technology Center, Stanford University.

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http://dx.doi.org/10.1080/00401706.2014.915890DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4582800PMC
July 2015

Tunable control of antibody immobilization using electric field.

Proc Natl Acad Sci U S A 2015 Feb 3;112(7):1995-9. Epub 2015 Feb 3.

Department of Electrical Engineering, Stanford University, Stanford, CA 94305.

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http://dx.doi.org/10.1073/pnas.1424592112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4343132PMC
February 2015

Mice are not men.

Proc Natl Acad Sci U S A 2015 Jan 24;112(4):E345. Epub 2014 Dec 24.

Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94305; and

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http://dx.doi.org/10.1073/pnas.1414857111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4313842PMC
January 2015

Detecting differential protein expression in large-scale population proteomics.

Bioinformatics 2014 Oct 12;30(19):2741-6. Epub 2014 Jun 12.

Stanford Genome Technology Center, Stanford University, Stanford, CA 94305, USA, Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA and Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA Stanford Genome Technology Center, Stanford University, Stanford, CA 94305, USA, Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, USA and Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, USA.

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http://dx.doi.org/10.1093/bioinformatics/btu341DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4173009PMC
October 2014

The Sequencing Bead Array (SBA), a next-generation digital suspension array.

PLoS One 2013 7;8(10):e76696. Epub 2013 Oct 7.

Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0076696PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3792038PMC
August 2014

Nanoelectronic impedance detection of target cells.

Biotechnol Bioeng 2014 Jun 28;111(6):1161-9. Epub 2013 Dec 28.

Center for Integrated Systems, Department of Electrical Engineering, Stanford University, Stanford, California; Stanford Genome Technology Center, 855 California Ave., Palo Alto, California, 94304.

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http://dx.doi.org/10.1002/bit.25171DOI Listing
June 2014

Multiplex target capture with double-stranded DNA probes.

Genome Med 2013 29;5(5):50. Epub 2013 May 29.

Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA.

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http://genomemedicine.biomedcentral.com/articles/10.1186/gm4
Publisher Site
http://dx.doi.org/10.1186/gm454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3706973PMC
May 2014

IpO: plasmids and methods for simplified, PCR-based DNA transplant in yeast.

Yeast 2014 May 20;31(5):185-93. Epub 2014 Mar 20.

Department of Biochemistry, Stanford University, CA, USA.

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http://doi.wiley.com/10.1002/yea.3006
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http://dx.doi.org/10.1002/yea.3006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4013213PMC
May 2014

A functional screen for copper homeostasis genes identifies a pharmacologically tractable cellular system.

BMC Genomics 2014 Apr 5;15:263. Epub 2014 Apr 5.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, 855 S California Avenue, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1186/1471-2164-15-263DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023593PMC
April 2014

The 50:50 method for PCR-based seamless genome editing in yeast.

Yeast 2014 Mar 13;31(3):103-12. Epub 2013 Dec 13.

Department of Biochemistry, Stanford University, CA, USA.

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http://doi.wiley.com/10.1002/yea.2992
Publisher Site
http://dx.doi.org/10.1002/yea.2992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3960506PMC
March 2014

Digital microfluidic assay for protein detection.

Proc Natl Acad Sci U S A 2014 Feb 21;111(6):2110-5. Epub 2014 Jan 21.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, Palo Alto, CA 94304.

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http://dx.doi.org/10.1073/pnas.1323998111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3926080PMC
February 2014

Diversity of the vaginal microbiome correlates with preterm birth.

Reprod Sci 2014 Jan 28;21(1):32-40. Epub 2013 May 28.

1Stanford Genome Technology Center, Stanford University, Palo Alto, CA, USA.

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http://dx.doi.org/10.1177/1933719113488838DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3857766PMC
January 2014

PITPs as targets for selectively interfering with phosphoinositide signaling in cells.

Nat Chem Biol 2014 Jan 24;10(1):76-84. Epub 2013 Nov 24.

1] Department of Molecular and Cellular Medicine, Texas A&M University College Station, Texas, USA. [2] Department of Biochemistry and Biophysics, Texas A&M University College Station, Texas, USA. [3] Department of Chemistry, Texas A&M University College Station, Texas, USA. [4] Department of Cell and Developmental Biology, Lineberger Comprehensive Cancer Center, University of North Carolina School of Medicine, Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1038/nchembio.1389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4059020PMC
January 2014

Computational identification and analysis of orphan assembly-line polyketide synthases.

J Antibiot (Tokyo) 2014 Jan 4;67(1):89-97. Epub 2013 Dec 4.

1] Department of Biochemistry, Stanford University, Stanford, CA, USA [2] Stanford Genome Technology Center, 855 South California Avenue, Palo Alto, CA, USA.

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http://dx.doi.org/10.1038/ja.2013.125DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4028714PMC
January 2014

Simulation and fabrication of a new novel 3D injectable biosensor for high throughput genomics and proteomics in a lab-on-a-chip device.

Nanotechnology 2013 Nov 22;24(46):465301. Epub 2013 Oct 22.

Center for Integrated Systems, Department of Electrical Engineering, Stanford University, USA. Stanford Genome Technology Center, 855 California Avenue, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1088/0957-4484/24/46/465301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3878440PMC
November 2013

Treadmill exercise inhibits apoptotic neuronal cell death with suppressed vascular endothelial growth factor expression in the retinas of the diabetic rats.

J Exerc Rehabil 2013 30;9(3):348-53. Epub 2013 Jun 30.

Department of Sport & Health Science, College of Natural Science, Sangmyung University, Seoul, Korea.

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http://dx.doi.org/10.12965/jer.130043DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836530PMC
November 2013

Erratum: Publisher's Note: "Label-free electronic probing of nucleic acids and proteins at the nanoscale using the nanoneedle biosensor" [Biomicrofluidics 7, 044114 (2013)].

Biomicrofluidics 2013 21;7(4):49901. Epub 2013 Aug 21.

Center for Integrated Systems, Department of Electrical Engineering, Stanford University, 855 California Ave., Palo Alto, California 94304, USA ; Stanford Genome Technology Center, 855 California Ave., Palo Alto, California 94304, USA.

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http://dx.doi.org/10.1063/1.4819277DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765295PMC
August 2013

Rare variant detection using family-based sequencing analysis.

Proc Natl Acad Sci U S A 2013 Mar 20;110(10):3985-90. Epub 2013 Feb 20.

Department of Bioinformatics and Computational Biology, Division of Quantitative Sciences, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.

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http://dx.doi.org/10.1073/pnas.1222158110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3593912PMC
March 2013

Cationic amphiphilic drugs are potent inhibitors of yeast sporulation.

PLoS One 2012 8;7(8):e42853. Epub 2012 Aug 8.

Stanford Genome Technology Center, Stanford University, Palo Alto, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042853PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3414501PMC
February 2013

Microneedle Biosensor: A Method for Direct Label-free Real Time Protein Detection.

Sens Actuators B Chem 2013 Feb;177:848-855

Center for Integrated Systems, Department of Electrical Engineering, Stanford University ; Stanford Genome Technology Center; 855 California Ave., Palo Alto, CA 94304, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S09254005120126
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http://dx.doi.org/10.1016/j.snb.2012.11.064DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3551587PMC
February 2013

Smart surface for elution of protein-protein bound particles: nanonewton dielectrophoretic forces using atomic layer deposited oxides.

Anal Chem 2012 Dec 6;84(24):10793-801. Epub 2012 Dec 6.

Stanford Genome Technology Center, Stanford, California 94304, USA.

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http://dx.doi.org/10.1021/ac302857zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4984534PMC
December 2012

Microfluidic diagnostic tool for the developing world: contactless impedance flow cytometry.

Lab Chip 2012 Nov;12(21):4499-507

Dept. of Electrical Engineering, Stanford University, Stanford, CA, USA.

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http://dx.doi.org/10.1039/c2lc40759kDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3495618PMC
November 2012

Progress toward an aberration-corrected low energy electron microscope for DNA sequencing and surface analysis.

J Vac Sci Technol B Nanotechnol Microelectron 2012 Nov 26;30(6):6F402. Epub 2012 Oct 26.

Electron Optica Inc., 1000 Elwell Court #110, Palo Alto, California 94303.

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http://avs.scitation.org/doi/10.1116/1.4764095
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http://dx.doi.org/10.1116/1.4764095DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3634312PMC
November 2012

A rapid, cost-effective method of assembly and purification of synthetic DNA probes >100 bp.

PLoS One 2012 6;7(4):e34373. Epub 2012 Apr 6.

Stanford Genome Technology Center, Palo Alto, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0034373PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3321010PMC
September 2012

Improvement in cell capture throughput using parallel bioactivated microfluidic channels.

Biomed Microdevices 2012 Aug;14(4):625-9

Stanford Genome Technology Center, Stanford University Stanford, Stanford, CA, USA.

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http://dx.doi.org/10.1007/s10544-012-9643-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3414683PMC
August 2012

Control of DNA capture by nanofluidic transistors.

ACS Nano 2012 Aug 11;6(8):6767-75. Epub 2012 Jul 11.

Department of Electrical Engineering, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1021/nn3014917DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3429714PMC
August 2012

Multiplex assay for condition-dependent changes in protein-protein interactions.

Proc Natl Acad Sci U S A 2012 Jun 21;109(23):9213-8. Epub 2012 May 21.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1073/pnas.1204952109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384208PMC
June 2012

JETTA: junction and exon toolkits for transcriptome analysis.

Bioinformatics 2012 May 19;28(9):1274-5. Epub 2012 Mar 19.

Stanford Genome Technology Center, 855 California Street, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts134DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338022PMC
May 2012

High-throughput, high-fidelity HLA genotyping with deep sequencing.

Proc Natl Acad Sci U S A 2012 May 15;109(22):8676-81. Epub 2012 May 15.

Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94003, USA.

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http://dx.doi.org/10.1073/pnas.1206614109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3365218PMC
May 2012

Use of negative dielectrophoresis for selective elution of protein-bound particles.

Anal Chem 2012 Feb 20;84(3):1432-8. Epub 2012 Jan 20.

Stanford Genome Technology Center, Stanford, California, USA.

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http://dx.doi.org/10.1021/ac202508uDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3278233PMC
February 2012

The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome.

Nucleic Acids Res 2012 Jan 18;40(Database issue):D1137-43. Epub 2011 Nov 18.

Biomedical Informatics Training Program, Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, Stanford Genome Technology Center, Stanford University, Palo Alto and Department of Computer Science, Stanford University, Stanford, CA 94304, USA.

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http://dx.doi.org/10.1093/nar/gkr973DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3245143PMC
January 2012

High-quality DNA sequence capture of 524 disease candidate genes.

Proc Natl Acad Sci U S A 2011 Apr 5;108(16):6549-54. Epub 2011 Apr 5.

Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1073/pnas.1018981108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3080966PMC
April 2011

Predicting patient survival from longitudinal gene expression.

Stat Appl Genet Mol Biol 2010 22;9:Article41. Epub 2010 Nov 22.

Stanford University, USA.

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http://dx.doi.org/10.2202/1544-6115.1617DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3004784PMC
March 2011

Human transcriptome array for high-throughput clinical studies.

Proc Natl Acad Sci U S A 2011 Mar 11;108(9):3707-12. Epub 2011 Feb 11.

Stanford Genome Technology Center and Department of Biochemistry, Stanford University, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1073/pnas.1019753108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048146PMC
March 2011

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.

Proc Natl Acad Sci U S A 2011 Jan 13;108(3):1058-63. Epub 2010 Dec 13.

Institut National de Santé et de Recherche Médicale, Unité 625, Institut Fédératif de Recherche 140, Université de Rennes 1, F-35042 Rennes, France.

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http://dx.doi.org/10.1073/pnas.1016459108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3024698PMC
January 2011

A molecular inversion probe assay for detecting alternative splicing.

BMC Genomics 2010 Dec 17;11:712. Epub 2010 Dec 17.

Stanford Genome Technology Center, Department of Biochemistry, Stanford University School of Medicine, Palo Alto, CA USA.

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http://dx.doi.org/10.1186/1471-2164-11-712DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3022918PMC
December 2010

Gas-phase cleavage and dephosphorylation of universal linker-bound oligodeoxynucleotides.

Nucleosides Nucleotides Nucleic Acids 2010 Nov;29(11):867-78

Stanford Genome Technology Center, Stanford University, 855 S. California Ave, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1080/15257770.2010.534757DOI Listing
November 2010

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry.

BMC Res Notes 2010 Oct 8;3:257. Epub 2010 Oct 8.

Stanford Genome Technology Centre, 855 S, California St,, Palo Alto, CA 94304, USA.

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http://dx.doi.org/10.1186/1756-0500-3-257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020662PMC
October 2010

Gene annotation and drug target discovery in Candida albicans with a tagged transposon mutant collection.

PLoS Pathog 2010 Oct 7;6(10):e1001140. Epub 2010 Oct 7.

Department of Genetics, Stanford University, Palo Alto, California, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1001140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951378PMC
October 2010