Ronald G Collman

Ronald G Collman

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Ronald G Collman

Publications by authors named "Ronald G Collman"

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Redondoviridae, a Family of Small, Circular DNA Viruses of the Human Oro-Respiratory Tract Associated with Periodontitis and Critical Illness.

Cell Host Microbe 2019 May;25(5):719-729.e4

Department of Microbiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA. Electronic address:

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http://dx.doi.org/10.1016/j.chom.2019.04.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6510254PMC
May 2019

SIV Coreceptor Specificity in Natural and Non-Natural Host Infection: Implications for Cell Targeting and Differential Outcomes from Infection.

Curr HIV Res 2018 ;16(1):41-51

Department of Medicine and Penn Center for AIDS Research, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, United States.

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http://dx.doi.org/10.2174/1570162X15666171124121805DOI Listing
April 2019

Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit.

Infect Control Hosp Epidemiol 2018 Dec 18:1-7. Epub 2018 Dec 18.

1Pulmonary, Allergy and Critical Care Division, Department of Medicine,University of Pennsylvania Perelman School of Medicine,Philadelphia, Pennsylvania.

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https://www.cambridge.org/core/product/identifier/S0899823X1
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http://dx.doi.org/10.1017/ice.2018.319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581638PMC
December 2018

Characterisation of the nasal microbiota in granulomatosis with polyangiitis.

Ann Rheum Dis 2018 10 11;77(10):1448-1453. Epub 2018 Jul 11.

Division of Rheumatology and the Department of Biostatistics, Epidemiology, and Informatics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1136/annrheumdis-2018-213645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6463278PMC
October 2018

Of Mice and Men . . . and Microbes: Conclusions and Cautions from a Murine Study of the Lung Microbiome and Microbiome-Immune Interactions.

Am J Respir Crit Care Med 2018 08;198(4):419-422

1 Department of Medicine University of Pennsylvania School of Medicine Philadelphia, Pennsylvania.

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http://dx.doi.org/10.1164/rccm.201803-0586EDDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6118023PMC
August 2018

Loss of CXCR6 coreceptor usage characterizes pathogenic lentiviruses.

PLoS Pathog 2018 04 16;14(4):e1007003. Epub 2018 Apr 16.

Departments of Medicine and Microbiology, University of Pennsylvania School of Medicine, Philadelphia, PA, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1007003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5919676PMC
April 2018

A Summary of the First HIV Microbiome Workshop 2015.

AIDS Res Hum Retroviruses 2016 Oct/Nov;32(10-11):935-941. Epub 2016 Jul 14.

2 Department of Immunology/Microbiology, Rush University Medical Center , Chicago, Illinois.

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http://dx.doi.org/10.1089/AID.2016.0034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6445214PMC
December 2017

A Summary of the Second Annual HIV Microbiome Workshop.

AIDS Res Hum Retroviruses 2017 12 26;33(12):1258-1264. Epub 2017 Oct 26.

14 Department of Immunology/Microbiology, Rush University Medical Center , Chicago, Illinois.

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http://dx.doi.org/10.1089/aid.2017.0137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5770117PMC
December 2017

Application of "Omics" and Systems Biology to Sarcoidosis Research.

Ann Am Thorac Soc 2017 Dec;14(Supplement_6):S445-S451

7 Pulmonary, Critical Care and Sleep Medicine, Yale School of Medicine, New Haven, Connecticut.

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http://dx.doi.org/10.1513/AnnalsATS.201707-567OTDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5822413PMC
December 2017

Optimizing methods and dodging pitfalls in microbiome research.

Microbiome 2017 05 5;5(1):52. Epub 2017 May 5.

Division of Gastroenterology, Hepatology, and Nutrition, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania, 19104, USA.

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http://dx.doi.org/10.1186/s40168-017-0267-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5420141PMC
May 2017

Miniaturized devices for point of care molecular detection of HIV.

Lab Chip 2017 01;17(3):382-394

Department of Mechanical Engineering and Applied Mechanics, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1039/c6lc01239fDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5285266PMC
January 2017

Statin modulation of monocyte phenotype and function: implications for HIV-1-associated neurocognitive disorders.

J Neurovirol 2016 10 28;22(5):584-596. Epub 2016 Mar 28.

Department of Medicine, University of Pennsylvania Perelman School of Medicine, 36th and Hamilton Walk, Philadelphia, PA, 19104, USA.

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http://dx.doi.org/10.1007/s13365-016-0433-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5040617PMC
October 2016

Composition and dynamics of the respiratory tract microbiome in intubated patients.

Microbiome 2016 Feb 11;4. Epub 2016 Feb 11.

Department of Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.

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http://dx.doi.org/10.1186/s40168-016-0151-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750361PMC
February 2016

Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA.

Bioinformatics 2015 Aug 29;31(15):2461-8. Epub 2015 Mar 29.

Department of Biostatistics and Epidemiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/btv183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514928PMC
August 2015

Persistent high mortality in advanced HIV/TB despite appropriate antiretroviral and antitubercular therapy: an emerging challenge.

Curr HIV/AIDS Rep 2015 Mar;12(1):107-16

Division of Infectious Diseases, Department of Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA,

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http://dx.doi.org/10.1007/s11904-015-0256-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5174096PMC
March 2015

The lung microbiome in idiopathic pulmonary fibrosis. What does it mean and what should we do about it?

Am J Respir Crit Care Med 2014 Oct;190(8):850-2

1 Department of Medicine University of Pittsburgh School of Medicine Pittsburgh, Pennsylvania.

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http://dx.doi.org/10.1164/rccm.201409-1626EDDOI Listing
October 2014

CD4 depletion in SIV-infected macaques results in macrophage and microglia infection with rapid turnover of infected cells.

PLoS Pathog 2014 Oct 30;10(10):e1004467. Epub 2014 Oct 30.

Division of Microbiology & Immunology, Yerkes National Primate Research Center, Emory University School of Medicine, Atlanta, Georgia, United States of America; Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, Georgia, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1004467DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214815PMC
October 2014

Mixed Mycobacterium tuberculosis complex infections and false-negative results for rifampin resistance by GeneXpert MTB/RIF are associated with poor clinical outcomes.

J Clin Microbiol 2014 Jul 30;52(7):2422-9. Epub 2014 Apr 30.

Botswana-UPenn Partnership, Gaborone, Botswana Division of Infectious Diseases, University of Pennsylvania, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1128/JCM.02489-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4097703PMC
July 2014

Examining the relationship between alcohol use and high-risk sex practices in a population of women with high HIV incidence despite high levels of HIV-related knowledge.

Sex Transm Infect 2014 May 15;90(3):216-22. Epub 2014 Jan 15.

Division of Infectious Diseases, Department of Medicine, University of Pennsylvania, , Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1136/sextrans-2013-051244DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4150918PMC
May 2014

Gene editing of CCR5 in autologous CD4 T cells of persons infected with HIV.

N Engl J Med 2014 Mar;370(10):901-10

From the Perelman School of Medicine, University of Pennsylvania, Philadelphia (P.T., I.F., M.K., R.G.C., G.B.-S., G.P., W.-T.H., B.L.L., C.H.J.); Albert Einstein College of Medicine, Bronx, NY (D.S.); and Sangamo BioSciences, Richmond, CA (W.W.T., S.Q.W., G.L., S.K.S., R.T.S., M.A.G., G.N., M.C.H., P.D.G., D.G.A.).

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http://www.nejm.org/doi/10.1056/NEJMoa1300662
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http://dx.doi.org/10.1056/NEJMoa1300662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4084652PMC
March 2014

HIV-1 envelope-receptor interactions required for macrophage infection and implications for current HIV-1 cure strategies.

J Leukoc Biol 2014 Jan 24;95(1):71-81. Epub 2013 Oct 24.

1.GPO Box 2284, Melbourne 3001, Victoria, Australia. or University of Pennsylvania, 522 Johnson Pavilion, 36th and Hamilton Walk, Philadelphia, PA 19104-6060, USA. E-mail:

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http://dx.doi.org/10.1189/jlb.0713368DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3868190PMC
January 2014

Membrane-based, sedimentation-assisted plasma separator for point-of-care applications.

Anal Chem 2013 Nov 25;85(21):10463-70. Epub 2013 Oct 25.

Department of Mechanical Engineering and Applied Mechanics, ‡Center for Clinical Epidemiology and Biostatistics, §Department of Microbiology, ∇Department of Pathology and Laboratory Medicine, and ⊥Department of Medicine University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.

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http://pubs.acs.org/doi/10.1021/ac402459h
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http://dx.doi.org/10.1021/ac402459hDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3897712PMC
November 2013

Decreased plasticity of coreceptor use by CD4-independent SIV Envs that emerge in vivo.

Retrovirology 2013 Nov 12;10:133. Epub 2013 Nov 12.

Department of Medicine, University of Pennsylvania Perelman School of Medicine, 522 Johnson Pavilion, 36th & Hamilton Walk, Philadelphia, PA, USA.

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http://dx.doi.org/10.1186/1742-4690-10-133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3833851PMC
November 2013

Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts.

PLoS One 2012 6;7(9):e42786. Epub 2012 Sep 6.

Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0042786PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3435383PMC
May 2013

Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant.

Am J Respir Crit Care Med 2012 Sep 12;186(6):536-45. Epub 2012 Jul 12.

Pulmonary, Allergy and Critical Care Division, Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://www.atsjournals.org/doi/abs/10.1164/rccm.201204-0693O
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http://dx.doi.org/10.1164/rccm.201204-0693OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3480531PMC
September 2012

Associating microbiome composition with environmental covariates using generalized UniFrac distances.

Bioinformatics 2012 Aug 17;28(16):2106-13. Epub 2012 Jun 17.

Department of Biostatistics and Epidemiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1093/bioinformatics/bts342DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3413390PMC
August 2012

Topographical continuity of bacterial populations in the healthy human respiratory tract.

Am J Respir Crit Care Med 2011 Oct 16;184(8):957-63. Epub 2011 Jun 16.

University of Pennsylvania School of Medicine, 3610 Hamilton Walk, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1164/rccm.201104-0655OCDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3208663PMC
October 2011

Bayesian community-wide culture-independent microbial source tracking.

Nat Methods 2011 Jul 17;8(9):761-3. Epub 2011 Jul 17.

Department of Computer Science, University of Colorado, Boulder, Colorado, USA.

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http://dx.doi.org/10.1038/nmeth.1650DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3791591PMC
July 2011

R5X4 HIV-1 coreceptor use in primary target cells: implications for coreceptor entry blocking strategies.

J Transl Med 2011 Jan 27;9 Suppl 1:S3. Epub 2011 Jan 27.

Department of Medicine, University of Pennsylvania School of Medicine, 522 Johnson Pavilion, 36th & Hamilton Walk, Philadelphia, PA 19104-6060, USA.

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http://translational-medicine.biomedcentral.com/articles/10.
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http://dx.doi.org/10.1186/1479-5876-9-S1-S3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3105503PMC
January 2011

Disordered microbial communities in the upper respiratory tract of cigarette smokers.

PLoS One 2010 Dec 20;5(12):e15216. Epub 2010 Dec 20.

Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0015216PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3004851PMC
December 2010

Measurement of antiretroviral drugs in the lungs of HIV-infected patients.

HIV Ther 2010 Mar;4(2):247-251

Indiana University Medical Center, Richard Roudebush VA Medical Center, 1481 West 10th Street, Indianapolis, IN 46202 2884, USA Tel.: +1 317 988 3824.

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http://dx.doi.org/10.2217/hiv.10.5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2861507PMC
March 2010

CNS inflammation and macrophage/microglial biology associated with HIV-1 infection.

J Neuroimmune Pharmacol 2009 Dec 19;4(4):430-47. Epub 2009 Sep 19.

Department of Medicine and Center for AIDS Research, University of Pennsylvania School of Medicine, 522 Johnson Pavilion, 36th & Hamilton Walk, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1007/s11481-009-9174-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5935112PMC
December 2009

An arrestin-dependent multi-kinase signaling complex mediates MIP-1beta/CCL4 signaling and chemotaxis of primary human macrophages.

J Leukoc Biol 2009 Oct 20;86(4):833-45. Epub 2009 Jul 20.

Pulmonary, Allergy and Critical Care, Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104-6061, USA.

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http://dx.doi.org/10.1189/jlb.0908551DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2752020PMC
October 2009

Baseline resistance of primary human immunodeficiency virus type 1 strains to the CXCR4 inhibitor AMD3100.

J Virol 2008 Dec 17;82(23):11695-704. Epub 2008 Sep 17.

Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1128/JVI.01303-08DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2583649PMC
December 2008

Monocyte migration and LFA-1-mediated attachment to brain microvascular endothelia is regulated by SDF-1 alpha through Lyn kinase.

J Immunol 2008 Oct;181(7):4632-7

Division of Pulmonary, Allergy and Critical Care, Department of Medicine, University of Pennsylvania, School of Medicine, Philadelphia, PA 19104, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2721474PMC
http://dx.doi.org/10.4049/jimmunol.181.7.4632DOI Listing
October 2008

BCR-ABL1 alters SDF-1alpha-mediated adhesive responses through the beta2 integrin LFA-1 in leukemia cells.

Blood 2008 May 13;111(10):5182-6. Epub 2008 Mar 13.

Divisions of Hematology and Oncology, University of Pennsylvania School of Medicine, Philadelphia, USA.

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http://www.bloodjournal.org/cgi/doi/10.1182/blood-2007-10-11
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http://dx.doi.org/10.1182/blood-2007-10-117705DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2384141PMC
May 2008

Signaling mechanism of HIV-1 gp120 and virion-induced IL-1beta release in primary human macrophages.

J Immunol 2008 May;180(10):6675-84

Pulmonary, Allergy, and Critical Care, Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2375537PMC
http://dx.doi.org/10.4049/jimmunol.180.10.6675DOI Listing
May 2008

Effect of highly active antiretroviral therapy on viral burden in the lungs of HIV-infected subjects.

J Infect Dis 2008 Jan;197(1):109-16

Division of Pulmonary and Critical Care Medicine and the AIDS Clinical Trials Unit, Indiana University Medical Center, Indianapolis, USA.

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http://dx.doi.org/10.1086/523766DOI Listing
January 2008

HIV-1 coreceptor preference is distinct from target cell tropism: a dual-parameter nomenclature to define viral phenotypes.

J Leukoc Biol 2006 Nov 21;80(5):965-72. Epub 2006 Aug 21.

Department of Pathology, Immunology, and Laboratory Medicine, College of Medicine, University of Florida, 1600 SW Archer Rd., Gainesville, FL 32610-0275, USA.

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http://dx.doi.org/10.1189/jlb.0306148DOI Listing
November 2006

The Src kinase Lyn is required for CCR5 signaling in response to MIP-1beta and R5 HIV-1 gp120 in human macrophages.

Blood 2006 Aug 18;108(4):1145-50. Epub 2006 Apr 18.

Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1182/blood-2005-12-012815DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1895866PMC
August 2006

HIV-1 gp120-induced TNF-{alpha} production by primary human macrophages is mediated by phosphatidylinositol-3 (PI-3) kinase and mitogen-activated protein (MAP) kinase pathways.

J Leukoc Biol 2005 Oct 4;78(4):1016-23. Epub 2005 Aug 4.

Department of Medicine, University of Pennsylvania school of Medicine, Philadelphia, PA 19104, USA.

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http://doi.wiley.com/10.1189/jlb.0105056
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http://dx.doi.org/10.1189/jlb.0105056DOI Listing
October 2005

Preferential use of CXCR4 by R5X4 human immunodeficiency virus type 1 isolates for infection of primary lymphocytes.

J Virol 2005 Feb;79(3):1480-6

Department of Medicine, University of Pennsylvania School of Medicine, 36th & Hamilton Walk, 522 Johnson Pavilion, Philadelphia, PA 19104-6060, USA.

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http://dx.doi.org/10.1128/JVI.79.3.1480-1486.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC544090PMC
February 2005

Use of dual recombinant vaccinia virus vectors to assay viral glycoprotein-mediated fusion with transfection-resistant primary cell targets.

Methods Mol Biol 2004 ;269:333-46

Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.

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http://link.springer.com/10.1385/1-59259-789-0:333
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http://dx.doi.org/10.1385/1-59259-789-0:333DOI Listing
August 2004

Chemokine receptor utilization and macrophage signaling by human immunodeficiency virus type 1 gp120: Implications for neuropathogenesis.

J Neurovirol 2004 ;10 Suppl 1:91-6

Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania 19104, USA.

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http://dx.doi.org/10.1080/753312758DOI Listing
May 2004

HIV-1 entry inhibitors: closing the front door.

Expert Opin Ther Targets 2004 Apr;8(2):65-78

Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia 19104, USA.

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http://www.tandfonline.com/doi/full/10.1517/14728222.8.2.65
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http://dx.doi.org/10.1517/14728222.8.2.65DOI Listing
April 2004

Differential regulation of host cellular genes by HIV-1 viral protein R (Vpr): cDNA microarray analysis using isogenic virus.

Biochem Biophys Res Commun 2004 Feb;314(4):1126-32

Department of Infectious Diseases and Microbiology, University of Pittsburgh, Pittsburgh, PA 15261, USA.

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http://dx.doi.org/10.1016/j.bbrc.2004.01.008DOI Listing
February 2004

Co-receptor antagonists as HIV-1 entry inhibitors.

Curr Opin Infect Dis 2004 Feb;17(1):7-16

Department of Medicine and the Center for AIDS Research, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania, USA.

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http://dx.doi.org/10.1097/00001432-200402000-00003DOI Listing
February 2004

Macrophage activation through CCR5- and CXCR4-mediated gp120-elicited signaling pathways.

J Leukoc Biol 2003 Nov 22;74(5):676-82. Epub 2003 Jul 22.

Department of Medicine, School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.

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http://dx.doi.org/10.1189/jlb.0503206DOI Listing
November 2003

HIV and cells of macrophage/dendritic lineage and other non-T cell reservoirs: new answers yield new questions.

J Leukoc Biol 2003 Nov 2;74(5):631-4. Epub 2003 Sep 2.

Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, USA.

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http://dx.doi.org/10.1189/jlb.0703357DOI Listing
November 2003