Publications by authors named "Ronald E Bontrop"

100Publications

The Genetic Mechanisms Driving Diversification of the Gene Cluster in Primates.

Front Immunol 2020 11;11:582804. Epub 2020 Sep 11.

Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, Netherlands.

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September 2020

Similar patterns of genetic diversity and linkage disequilibrium in Western chimpanzees (Pan troglodytes verus) and humans indicate highly conserved mechanisms of MHC molecular evolution.

BMC Evol Biol 2020 09 15;20(1):119. Epub 2020 Sep 15.

Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution, Anthropology Unit, University of Geneva, Geneva, Switzerland.

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September 2020

Comparative genetics of the major histocompatibility complex in humans and nonhuman primates.

Int J Immunogenet 2020 Jun 2;47(3):243-260. Epub 2020 May 2.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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June 2020

COVID-19 pandemic: is a gender-defined dosage effect responsible for the high mortality rate among males?

Immunogenetics 2020 07;72(5):275-277

Department of Comparative Genetics & Refinement, Biomedical Primate Research Centre, Lange Kleiweg, 161, Rijswijk, The Netherlands.

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July 2020

Unparalleled Rapid Evolution of Genes in Rhesus and Cynomolgus Macaque Populations.

J Immunol 2020 04 28;204(7):1770-1786. Epub 2020 Feb 28.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, 2288 GJ Rijswijk, the Netherlands; and

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April 2020

Full-length MHC class II alleles in three New World monkey species.

HLA 2020 02 20;95(2):163-165. Epub 2019 Nov 20.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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February 2020

Analysis of macaque BTN3A genes and transcripts in the extended MHC: conserved orthologs of human γδ T cell modulators.

Immunogenetics 2019 09 5;71(8-9):545-559. Epub 2019 Aug 5.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288 GJ, Rijswijk, The Netherlands.

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September 2019

Extensive Alternative Splicing of KIR Transcripts.

Front Immunol 2018 4;9:2846. Epub 2018 Dec 4.

Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, Netherlands.

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October 2019

Determining Mhc-DRB profiles in wild populations of three congeneric true lemur species by noninvasive methods.

Immunogenetics 2019 02 15;71(2):97-107. Epub 2018 Oct 15.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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February 2019

Correction to: Limited MHC class II gene polymorphism in the West African chimpanzee is distributed maximally by haplotype diversity.

Immunogenetics 2018 11;70(10):689-691

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, GJ, Rijswijk, The Netherlands.

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November 2018

Limited MHC class II gene polymorphism in the West African chimpanzee is distributed maximally by haplotype diversity.

Immunogenetics 2019 01 29;71(1):13-23. Epub 2018 Aug 29.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288 GJ, Rijswijk, The Netherlands.

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January 2019

Does the MHC Confer Protection against Malaria in Bonobos?

Trends Immunol 2018 10 17;39(10):768-771. Epub 2018 Aug 17.

Biomedical Primate Research Centre, Department of Comparative Genetics and Refinement, Rijswijk, The Netherlands; Department of Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, The Netherlands. Electronic address:

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October 2018

Nomenclature for the KIR of non-human species.

Immunogenetics 2018 09 4;70(9):571-583. Epub 2018 Jun 4.

Department of Structural Biology and Department of Microbiology & Immunology, School of Medicine, Stanford University, Stanford, CA, USA.

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September 2018

Human and Rhesus Macaque Haplotypes Defined by Their Transcriptomes.

J Immunol 2018 03 22;200(5):1692-1701. Epub 2018 Jan 22.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, 2288 GJ Rijswijk, the Netherlands;

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March 2018

A Specialist Macaque MHC Class I Molecule with HLA-B*27-like Peptide-Binding Characteristics.

J Immunol 2017 11 11;199(10):3679-3690. Epub 2017 Oct 11.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, 2288 GJ Rijswijk, the Netherlands.

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November 2017

AIDS in chimpanzees: the role of MHC genes.

Immunogenetics 2017 08 10;69(8-9):499-509. Epub 2017 Jul 10.

Comparative Genetics and Refinement, Biomedical Primate Research Centre, 2288 GJ, Rijswijk, The Netherlands.

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August 2017

Foreword: Immunogenetics special issue 2017.

Authors:
Ronald E Bontrop

Immunogenetics 2017 08;69(8-9):479-480

Biomedical Primate Research Center, PO Box 3306, 2280, Rijswijk, GH, Netherlands.

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August 2017

Limited MHC class I intron 2 repertoire variation in bonobos.

Immunogenetics 2017 10 16;69(10):677-688. Epub 2017 Jun 16.

Biomedical Primate Research Centre, Department of Comparative Genetics & Refinement, Rijswijk, The Netherlands.

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October 2017

The orthologs of HLA-DQ and -DP genes display abundant levels of variability in macaque species.

Immunogenetics 2017 Feb 22;69(2):87-99. Epub 2016 Oct 22.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre (BPRC), Lange Kleiweg 161, 2288 GJ, Rijswijk, The Netherlands.

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February 2017

Complex MHC Class I Gene Transcription Profiles and Their Functional Impact in Orangutans.

J Immunol 2016 Jan 18;196(2):750-8. Epub 2015 Dec 18.

Comparative Genetics and Refinement, Biomedical Primate Research Centre, 2288 GJ Rijswijk, the Netherlands; Theoretical Biology and Bioinformatics, Utrecht University, 3584 CH Utrecht, the Netherlands.

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January 2016

Co-evolution of the MHC class I and KIR gene families in rhesus macaques: ancestry and plasticity.

Immunol Rev 2015 Sep;267(1):228-45

Department of Comparative Genetics & Refinement, BPRC, Rijswijk, The Netherlands.

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September 2015

High diversity of MIC genes in non-human primates.

Immunogenetics 2014 Oct 31;66(9-10):581-7. Epub 2014 Jul 31.

Laboratoire d'ImmunoRhumatologie Moléculaire, INSERM UMR_S1109, Plateforme GENOMAX, LabEx Transplantex, Centre de Recherche d'Immunologie et d'Hématologie. Faculté de Médecine, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg, 4 Rue Kirschleger, 67085, Strasbourg, France.

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October 2014

Differential recombination dynamics within the MHC of macaque species.

Immunogenetics 2014 Oct 17;66(9-10):535-44. Epub 2014 Jun 17.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288 GJ, Rijswijk, The Netherlands.

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October 2014

DNA/long peptide vaccination against conserved regions of SIV induces partial protection against SIVmac251 challenge.

AIDS 2013 Nov;27(18):2841-51

aDepartment of Virology bDepartment of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk cDepartment of Immunohematology and Blood Transfusion, Leiden University Medical Center, Leiden, the Netherlands dUniversity of Regensburg, Regensburg, Germany eThe Jenner Institute, University of Oxford, Oxford, UK fISA Pharmaceuticals, Leiden, the Netherlands.

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November 2013

Unique peptide-binding motif for Mamu-B*037:01: an MHC class I allele common to Indian and Chinese rhesus macaques.

Immunogenetics 2013 Dec 17;65(12):897-900. Epub 2013 Sep 17.

Comparative Genetics and Refinement, Biomedical Primate Research Centre, 2288 GJ, Rijswijk, The Netherlands,

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December 2013

The repertoire of MHC class I genes in the common marmoset: evidence for functional plasticity.

Immunogenetics 2013 Dec 10;65(12):841-9. Epub 2013 Sep 10.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288 GJ, Rijswijk, The Netherlands.

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December 2013

The HIV-1 pandemic: does the selective sweep in chimpanzees mirror humankind's future?

Retrovirology 2013 May 24;10:53. Epub 2013 May 24.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288 GJ Rijswijk, The Netherlands.

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May 2013

Functional Annotation of Small Noncoding RNAs Target Genes Provides Evidence for a Deregulated Ubiquitin-Proteasome Pathway in Spinocerebellar Ataxia Type 1.

J Nucleic Acids 2012 3;2012:672536. Epub 2012 Oct 3.

Department of Medical Genetics, University Medical Center Utrecht, 3584 CG Utrecht, The Netherlands.

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October 2012

Evolution of HLA-DRB genes.

Mol Biol Evol 2012 Dec 23;29(12):3843-53. Epub 2012 Jul 23.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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December 2012

Multilocus definition of MHC haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis).

Immunogenetics 2012 Oct 8;64(10):755-65. Epub 2012 Jul 8.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288GJ, Rijswijk, The Netherlands.

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October 2012

The Impact of MicroRNAs on Brain Aging and Neurodegeneration.

Curr Gerontol Geriatr Res 2012 18;2012:359369. Epub 2012 Jan 18.

Department of Complex Genetics, Division of Medical Genetics, University Medical Center Utrecht, 3584 CG Utrecht, The Netherlands.

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August 2012

A comparative analysis of viral peptides presented by contemporary human and chimpanzee MHC class I molecules.

J Immunol 2011 Dec 31;187(11):5995-6001. Epub 2011 Oct 31.

Theoretical Biology and Bioinformatics, Utrecht University, 3584 CH Utrecht, The Netherlands.

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December 2011

DR haplotype diversity of the cynomolgus macaque as defined by its transcriptome.

Immunogenetics 2012 Jan 30;64(1):31-7. Epub 2011 Jul 30.

Biomedical Primate Research Centre, Department of Comparative Genetics and Refinement, Lange Kleiweg 161, 2288 GJ Rijswijk, The Netherlands.

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January 2012

The extreme plasticity of killer cell Ig-like receptor (KIR) haplotypes differentiates rhesus macaques from humans.

Eur J Immunol 2011 Sep 4;41(9):2719-28. Epub 2011 Aug 4.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg, Rijswijk, The Netherlands.

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September 2011

Genomic plasticity of the MHC class I A region in rhesus macaques: extensive haplotype diversity at the population level as revealed by microsatellites.

Immunogenetics 2011 Feb 15;63(2):73-83. Epub 2010 Oct 15.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 161, 2288, Rijswijk, The Netherlands.

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February 2011

Genome-wide analysis of miRNA expression reveals a potential role for miR-144 in brain aging and spinocerebellar ataxia pathogenesis.

Neurobiol Aging 2011 Dec 6;32(12):2316.e17-27. Epub 2010 May 6.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Center, Rijswijk, The Netherlands.

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December 2011

The mosaic of KIR haplotypes in rhesus macaques.

Immunogenetics 2010 May 5;62(5):295-306. Epub 2010 Mar 5.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 139, 2288GJ, Rijswijk, The Netherlands.

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May 2010

A novel gastrokine, Gkn3, marks gastric atrophy and shows evidence of adaptive gene loss in humans.

Gastroenterology 2010 May 4;138(5):1823-35. Epub 2010 Feb 4.

Murdoch Children's Research Institute, Royal Children's Hospital, Parkville, Victoria, Australia.

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May 2010

Extensive DRB region diversity in cynomolgus macaques: recombination as a driving force.

Immunogenetics 2010 Mar 4;62(3):137-47. Epub 2010 Feb 4.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands.

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March 2010

Drive against hotspot motifs in primates implicates the PRDM9 gene in meiotic recombination.

Science 2010 Feb 31;327(5967):876-9. Epub 2009 Dec 31.

Department of Statistics, Oxford University, 1 South Parks Road, Oxford OX1 3TG, UK.

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February 2010

Definition of Mafa-A and -B haplotypes in pedigreed cynomolgus macaques (Macaca fascicularis).

Immunogenetics 2009 Dec 24;61(11-12):745-53. Epub 2009 Nov 24.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 139, 2288 GJ, Rijswijk, The Netherlands.

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December 2009

The chimpanzee Mhc-DRB region revisited: gene content, polymorphism, pseudogenes, and transcripts.

Mol Immunol 2009 Dec 2;47(2-3):381-9. Epub 2009 Oct 2.

Biomedical Primate Research Centre, Department of Comparative Genetics and Refinement, Lange Kleiweg 139, 2288 GJ Rijswijk, The Netherlands.

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December 2009

Evidence for balancing selection acting on KIR2DL4 genotypes in rhesus macaques of Indian origin.

Immunogenetics 2009 Jul 9;61(7):503-12. Epub 2009 Jun 9.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Lange Kleiweg 139, Rijswijk, 2288 GJ, The Netherlands.

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July 2009

Correlated evolution of nucleotide substitution rates and allelic variation in Mhc-DRB lineages of primates.

BMC Evol Biol 2009 Apr 12;9:73. Epub 2009 Apr 12.

Department of Biology, University of Antwerp, Campus Drie Eiken, Universiteitsplein 1, Wilrijk, Belgium.

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April 2009

A splice site mutation converts an inhibitory killer cell Ig-like receptor into an activating one.

Mol Immunol 2009 Feb 18;46(4):640-8. Epub 2008 Nov 18.

Biomedical Primate Research Centre, Department of Comparative Genetics and Refinement, Lange Kleiweg 139, 2288 GJ Rijswijk, The Netherlands.

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February 2009

Genomic plasticity of the immune-related Mhc class I B region in macaque species.

BMC Genomics 2008 Oct 30;9:514. Epub 2008 Oct 30.

Université Paul Sabatier, Laboratoire Evolution et Diversité Biologique UMR5174 UPS/CNRS, 118 Route de Narbonne, Toulouse 31062 cedex 9, France.

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October 2008

Comparative genetics of a highly divergent DRB microsatellite in different macaque species.

Immunogenetics 2008 Dec 28;60(12):737-48. Epub 2008 Oct 28.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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December 2008

A snapshot of the Mamu-B genes and their allelic repertoire in rhesus macaques of Chinese origin.

Immunogenetics 2008 Sep 11;60(9):507-14. Epub 2008 Jul 11.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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September 2008

Impact of endogenous intronic retroviruses on major histocompatibility complex class II diversity and stability.

J Virol 2008 Jul 30;82(13):6667-77. Epub 2008 Apr 30.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH Rijswijk, The Netherlands.

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July 2008

Reshuffling of ancient peptide binding motifs between HLA-DRB multigene family members: old wine served in new skins.

Mol Immunol 2008 May;45(10):2743-51

Biomedical Primate Research Centre, Department of Comparative Genetics and Refinement, Lange Kleiweg 139, Rijswijk, The Netherlands.

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May 2008

Pinpointing a selective sweep to the chimpanzee MHC class I region by comparative genomics.

Mol Ecol 2008 Apr 10;17(8):2074-88. Epub 2008 Mar 10.

Biomedical Primate Research Centre, Department of Comparative Genetics and Refinement, Lange Kleiweg 139, 2288 GJ Rijswijk, The Netherlands.

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April 2008

A highly divergent microsatellite facilitating fast and accurate DRB haplotyping in humans and rhesus macaques.

Proc Natl Acad Sci U S A 2007 May 14;104(21):8907-12. Epub 2007 May 14.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands.

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May 2007

MHC class I A region diversity and polymorphism in macaque species.

Immunogenetics 2007 May 3;59(5):367-75. Epub 2007 Mar 3.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands.

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May 2007

An unusual mode of concerted evolution of the EGF-TM7 receptor chimera EMR2.

FASEB J 2006 Dec 26;20(14):2582-4. Epub 2006 Oct 26.

Department of Experimental Immunology, Academic Medical Center, University of Amsterdam, P.O. Box 22700, 1100 DE Amsterdam, The Netherlands.

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December 2006

Comparative genetics of MHC polymorphisms in different primate species: duplications and deletions.

Authors:
Ronald E Bontrop

Hum Immunol 2006 Jun 3;67(6):388-97. Epub 2006 Apr 3.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, GH Rijswijk, The Netherlands.

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June 2006

Reactivation by exon shuffling of a conserved HLA-DR3-like pseudogene segment in a New World primate species.

Proc Natl Acad Sci U S A 2006 Apr 31;103(15):5864-8. Epub 2006 Mar 31.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands.

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April 2006

Extensive sharing of MHC class II alleles between rhesus and cynomolgus macaques.

Immunogenetics 2006 May 10;58(4):259-68. Epub 2006 Feb 10.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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May 2006

Modeling human arthritic diseases in nonhuman primates.

Arthritis Res Ther 2005 9;7(4):145-54. Epub 2005 Jun 9.

Department of Immunobiology, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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April 2006

Microsatellite typing of the rhesus macaque MHC region.

Immunogenetics 2005 May 5;57(3-4):198-209. Epub 2005 Apr 5.

Veterinary Genetics Laboratory, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.

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May 2005

MHC polymorphism: AIDS susceptibility in non-human primates.

Trends Immunol 2005 Apr;26(4):227-33

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, P.O Box 3306, 2280 GH Rijswijk, The Netherlands.

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April 2005

Reduced MIC gene repertoire variation in West African chimpanzees as compared to humans.

Mol Biol Evol 2005 Jun 9;22(6):1375-85. Epub 2005 Mar 9.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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June 2005

Comparison of fine-scale recombination rates in humans and chimpanzees.

Science 2005 Apr 10;308(5718):107-11. Epub 2005 Feb 10.

Department of Molecular Biology and Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114-2622, USA.

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April 2005

Unparalleled complexity of the MHC class I region in rhesus macaques.

Proc Natl Acad Sci U S A 2005 Feb 21;102(5):1626-31. Epub 2005 Jan 21.

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, PO Box 3306, 2280 GH Rijswijk, The Netherlands.

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February 2005

Genetic makeup of the DR region in rhesus macaques: gene content, transcripts, and pseudogenes.

J Immunol 2004 May;172(10):6152-7

Department of Comparative Genetics and Refinement, Biomedical Primate Research Centre, Rijswijk, The Netherlands.

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May 2004

Evolutionary stability of MHC class II haplotypes in diverse rhesus macaque populations.

Immunogenetics 2003 Nov 18;55(8):540-51. Epub 2003 Oct 18.

Department of Comparative Genetics and Refinement and Department of Virology, Biomedical Primate Research Centre, Lange Kleiweg 139, 2288 GJ Rijswijk, The Netherlands.

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November 2003

Effects of MHC class I on HIV/SIV disease in primates.

AIDS 2002 ;16 Suppl 4:S105-14

Basic Research Program, SAIC Frederick, National Cancer Institute, Frederick, MD 21702, USA.

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May 2003

Microarray analysis of nonhuman primates: validation of experimental models in neurological disorders.

FASEB J 2003 May 5;17(8):929-31. Epub 2003 Mar 5.

Functional Genomics and Bioinformatics Laboratory, Department of Neurobiology, A. I. Virtanen Institute, University of Kuopio, 70211 Kuopio, Finland.

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May 2003

Evidence for an ancient selective sweep in the MHC class I gene repertoire of chimpanzees.

Proc Natl Acad Sci U S A 2002 Sep 19;99(18):11748-53. Epub 2002 Aug 19.

Department of Immunobiology, Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands.

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September 2002

Extensive Mhc-DQB variation in humans and non-human primate species.

Immunogenetics 2002 Jul 20;54(4):230-9. Epub 2002 Jun 20.

Biomedical Primate Research Centre, Department of Immunobiology, Lange Kleiweg 139, 2280 GH Rijswijk, The Netherlands.

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July 2002