Roland Arnold

Roland Arnold

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Roland Arnold

Publications by authors named "Roland Arnold"

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Srrm234, but not canonical SR and hnRNP proteins, drive inclusion of exon 9 variable exons.

RNA 2019 10 10;25(10):1353-1365. Epub 2019 Jul 10.

School of Biosciences, College of Life and Environmental Sciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, United Kingdom.

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http://dx.doi.org/10.1261/rna.071316.119DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800468PMC
October 2019

Association analyses identify 31 new risk loci for colorectal cancer susceptibility.

Nat Commun 2019 05 14;10(1):2154. Epub 2019 May 14.

Colon Cancer Genetics Group, Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, University of Edinburgh, Edinburgh, EH4 2XU, UK.

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http://www.nature.com/articles/s41467-019-09775-w
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http://dx.doi.org/10.1038/s41467-019-09775-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517433PMC
May 2019

Tropomyosins: Potential Biomarkers for Urothelial Bladder Cancer.

Int J Mol Sci 2019 Mar 4;20(5). Epub 2019 Mar 4.

Institute of Cancer and Genomic Sciences, College of Medicine and Dental Sciences, University of Birmingham, Birmingham B15 2TT, UK.

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http://dx.doi.org/10.3390/ijms20051102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429115PMC
March 2019

Proteome-wide analysis of phospho-regulated PDZ domain interactions.

Mol Syst Biol 2018 08 20;14(8):e8129. Epub 2018 Aug 20.

Department of Chemistry - BMC, Uppsala University, Uppsala, Sweden

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6100724PMC
http://dx.doi.org/10.15252/msb.20178129DOI Listing
August 2018

Antimicrobial activity of ozone and NaF-chlorhexidine on early childhood caries.

Braz Oral Res 2017 Jan 5;31:e2. Epub 2017 Jan 5.

Universidade Federal de Santa Catarina - UFSC, Dental School, Department of Pediatric Dentistry, Florianópolis, SC, Brazil.

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http://dx.doi.org/10.1590/1807-3107BOR-2017.vol31.0002DOI Listing
January 2017

PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies.

BMC Bioinformatics 2016 Apr 1;17:150. Epub 2016 Apr 1.

Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, M5S 3E1, ON, Canada.

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http://dx.doi.org/10.1186/s12859-016-1001-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4818438PMC
April 2016

EffectiveDB--updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.

Nucleic Acids Res 2016 Jan 20;44(D1):D669-74. Epub 2015 Nov 20.

Division of Computational System Biology, Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria

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http://dx.doi.org/10.1093/nar/gkv1269DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702896PMC
January 2016

Combined hereditary and somatic mutations of replication error repair genes result in rapid onset of ultra-hypermutated cancers.

Nat Genet 2015 Mar 2;47(3):257-62. Epub 2015 Feb 2.

1] Program in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada. [2] The Arthur and Sonia Labatt Brain Tumour Research Centre, The Hospital for Sick Children, Toronto, Ontario, Canada. [3] Division of Hematology/Oncology, The Hospital for Sick Children, Toronto, Ontario, Canada. [4] Department of Pediatrics, University of Toronto, Ontario, Canada.

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http://dx.doi.org/10.1038/ng.3202DOI Listing
March 2015

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.

Bioinformatics 2015 Feb 13;31(3):306-10. Epub 2014 Oct 13.

Department of Biochemistry, University of Regina, Regina, Saskatchewan S4S0A2, Canada, Banting and Best Department of Medical Research, Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, Ontario M5S 3E1, Canada, Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada, Department of Computer Science, University of Regina, Regina, Saskatchewan S4S0A2, Canada, Department of Biochemistry, University of Toronto, Toronto, Ontario M5S 1A8, Canada, Department of Biology, Carleton University, Ottawa, Ontario K1S 5B6, Canada and Department of Computer Science, University of Toronto, Toronto, Ontario M5S 3G4, Canada.

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http://dx.doi.org/10.1093/bioinformatics/btu671DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308668PMC
February 2015

Large-scale interaction profiling of PDZ domains through proteomic peptide-phage display using human and viral phage peptidomes.

Proc Natl Acad Sci U S A 2014 Feb 3;111(7):2542-7. Epub 2014 Feb 3.

Department of Molecular Genetics, Department of Computer Science, Donnelly Centre, University of Toronto, Toronto, ON, Canada M5S 3E1.

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http://dx.doi.org/10.1073/pnas.1312296111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3932933PMC
February 2014

SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage.

Nucleic Acids Res 2014 Jan 27;42(Database issue):D279-84. Epub 2013 Oct 27.

Terrence Donnelly Centre for Cellular and Biomolecular Research, Kim Lab, University of Toronto, Toronto, ON M5S 3E1, Canada, CUBE-Division of Computational Systems Biology, Department of Microbiology and Ecosystem Science, University of Vienna, 1090 Vienna, Austria and Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, Technische Universität München, Wissenschaftszentrum Weihenstephan, 85764 Neuherberg, Germany.

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/
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http://dx.doi.org/10.1093/nar/gkt970DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3965014PMC
January 2014

Comparative Resistance of AH26 and a New Sealer Prototype to a Bacterial Challenge.

Int J Dent 2012 22;2012:365231. Epub 2012 Feb 22.

Department of Endodontics, UNC School of Dentistry, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1155/2012/365231DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3296140PMC
August 2012

Computational analysis of interactomes: current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space.

Methods 2012 Aug 28;57(4):508-18. Epub 2012 Jun 28.

Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada M5S 3E1.

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http://dx.doi.org/10.1016/j.ymeth.2012.06.011DOI Listing
August 2012

B2G-FAR, a species-centered GO annotation repository.

Bioinformatics 2011 Apr 18;27(7):919-24. Epub 2011 Feb 18.

Bioinformatics and Genomics Department, Centro de Investigaciones Príncipe Felipe (CIPF), Valencia, Spain.

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http://dx.doi.org/10.1093/bioinformatics/btr059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3065692PMC
April 2011

Functional analysis of the finO distal region of plasmid R1.

Plasmid 2011 Mar 8;65(2):159-68. Epub 2010 Dec 8.

University of Graz, Institute of Molecular Biosciences, Humboldtstrasse 50, A-8010 Graz, Austria.

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http://dx.doi.org/10.1016/j.plasmid.2010.12.002DOI Listing
March 2011

Effective--a database of predicted secreted bacterial proteins.

Nucleic Acids Res 2011 Jan 11;39(Database issue):D591-5. Epub 2010 Nov 11.

Department of Genome Oriented Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, Maximus-von-Imhof-Forum 3, 85354 Freising, Germany.

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http://dx.doi.org/10.1093/nar/gkq1154DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013723PMC
January 2011

Molecular recognition determinants for type IV secretion of diverse families of conjugative relaxases.

Mol Microbiol 2010 Dec 15;78(6):1539-55. Epub 2010 Oct 15.

Institute of Molecular Biosciences, University of Graz, Humboldtstrasse 50, 8010 Graz, Austria.

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http://doi.wiley.com/10.1111/j.1365-2958.2010.07423.x
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http://dx.doi.org/10.1111/j.1365-2958.2010.07423.xDOI Listing
December 2010

Antibacterial surface properties of fluoride-containing resin-based sealants.

J Dent 2010 May 18;38(5):387-91. Epub 2010 Jan 18.

The University of North Carolina at Chapel Hill, School of Dentistry, Department of Operative Dentistry, Chapel Hill, NC 27599-7450, USA.

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https://linkinghub.elsevier.com/retrieve/pii/S03005712100001
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http://dx.doi.org/10.1016/j.jdent.2010.01.005DOI Listing
May 2010

Targeting effectors: the molecular recognition of Type III secreted proteins.

Microbes Infect 2010 May 21;12(5):346-58. Epub 2010 Feb 21.

Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, 85350 Freising, Germany.

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http://dx.doi.org/10.1016/j.micinf.2010.02.003DOI Listing
May 2010

SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters.

Nucleic Acids Res 2010 Jan 11;38(Database issue):D223-6. Epub 2009 Nov 11.

Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, Freising, Germany.

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http://dx.doi.org/10.1093/nar/gkp949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808863PMC
January 2010

Periapical inflammation and bacterial penetration after coronal inoculation of dog roots filled with RealSeal 1 or Thermafil.

J Endod 2009 Jun;35(6):852-7

Department of Endodontics, University of North Carolina at Chapel Hill, NC 27599-7450, USA.

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http://dx.doi.org/10.1016/j.joen.2009.03.050DOI Listing
June 2009

Sequence-based prediction of type III secreted proteins.

PLoS Pathog 2009 Apr 24;5(4):e1000376. Epub 2009 Apr 24.

Department of Genome Oriented Bioinformatics, Technische Universität München, Wissenschaftszentrum Weihenstephan, Freising, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1000376DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669295PMC
April 2009

PEDANT covers all complete RefSeq genomes.

Nucleic Acids Res 2009 Jan 21;37(Database issue):D408-11. Epub 2008 Oct 21.

Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum München, German Research Center for Environmental Health (GmbH), Ingolstädter Landstrasse 1, 85764 Neuherberg, Germany.

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http://dx.doi.org/10.1093/nar/gkn749DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686588PMC
January 2009

Synergistic pathogenicity of Porphyromonas gingivalis and Fusobacterium nucleatum in the mouse subcutaneous chamber model.

J Endod 2009 Jan;35(1):86-94

Department of Endodontics, School of Dentistry, University of North Carolina at Chapel Hill, North Carolina, USA.

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http://dx.doi.org/10.1016/j.joen.2008.10.015DOI Listing
January 2009

probeCheck--a central resource for evaluating oligonucleotide probe coverage and specificity.

Environ Microbiol 2008 Oct 21;10(10):2894-8. Epub 2008 Jul 21.

Department of Microbial Ecology, Universität Wien, Althanstrasse 14, A-1090 Wien, Austria.

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http://dx.doi.org/10.1111/j.1462-2920.2008.01706.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2613240PMC
October 2008

Antimicrobial activity and local release characteristics of chlorhexidine diacetate loaded within the dental copolymer matrix, ethylene vinyl acetate.

J Biomed Mater Res B Appl Biomater 2008 Aug;86(2):506-13

Dental Research Center, School of Dentistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599-7450, USA.

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http://doi.wiley.com/10.1002/jbm.b.31049
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http://dx.doi.org/10.1002/jbm.b.31049DOI Listing
August 2008

SIMAP--structuring the network of protein similarities.

Nucleic Acids Res 2008 Jan 23;36(Database issue):D289-92. Epub 2007 Nov 23.

Chair of Genome Oriented Bioinformatics, Center of Life and Food Science, Technische Universität München, 85350 Freising-Weihenstephan, Germany.

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http://dx.doi.org/10.1093/nar/gkm963DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238827PMC
January 2008

NF-kappaB signaling, elastase localization, and phagocytosis differ in HIV-1 permissive and nonpermissive U937 clones.

J Immunol 2008 Jan;180(1):492-9

Institute for Human Genetics and Biochemistry, Department of Medicine, Mount Sinai School of Medicine, New York, NY 10003, USA.

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http://dx.doi.org/10.4049/jimmunol.180.1.492DOI Listing
January 2008

Effect of resin adhesive systems on root caries formation in vitro.

Quintessence Int 2008 Jan;39(1):33-7

Department of Operative Dentistry, The University of North Carolina at Chapel Hill, NC 27599-7450, USA.

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January 2008

Clinical efficiency of 2% chlorhexidine gel in reducing intracanal bacteria.

J Endod 2007 Nov;33(11):1283-9

Department of Endodontics, University of North Carolina School of Dentistry, Chapel Hill, North Carolina 27599, USA.

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http://dx.doi.org/10.1016/j.joen.2007.07.010DOI Listing
November 2007

In vitro inhibition of bacterial growth using different dental adhesive systems.

Oper Dent 2007 Jul-Aug;32(4):388-93

Department of Periodontology, Dental Research Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

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http://dx.doi.org/10.2341/06-115DOI Listing
September 2007

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

Bioinformatics 2007 Apr 19;23(8):1026-8. Epub 2007 Feb 19.

Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/btm039DOI Listing
April 2007

Cross-contamination of the PSP sensor in a preclinical setting.

J Dent Hyg 2005 1;79(3). Epub 2005 Jul 1.

Omnii Oral Pharmaceuticals.

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March 2006

SIMAP: the similarity matrix of proteins.

Nucleic Acids Res 2006 Jan;34(Database issue):D252-6

Department of Genome Oriented Bioinformatics, Technical University of Munich, Wissenschaftszentrum Weihenstephan, 85350 Freising, Germany.

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http://dx.doi.org/10.1093/nar/gkj106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347468PMC
January 2006

SIMAP--the similarity matrix of proteins.

Bioinformatics 2005 Sep;21 Suppl 2:ii42-6

Institute for Bioinformatics, GSF-National Research Center for Environment and Health Ingolstädter, Neuherberg, Germany.

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http://dx.doi.org/10.1093/bioinformatics/bti1107DOI Listing
September 2005

Periapical inflammation after coronal microbial inoculation of dog roots filled with gutta-percha or resilon.

J Endod 2005 Feb;31(2):91-6

Department of Endodontics, University of North Carolina School of Dentistry, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1097/01.don.0000140569.33867.bfDOI Listing
February 2005

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome.

Nucleic Acids Res 2002 Jan;30(1):91-3

Institute for Bioinformatics (MIPS), GSF National Research Center for Environment and Health, Ingolstaedter Landstrasse 1, 85764 Neuherberg, Germany.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99069PMC
http://dx.doi.org/10.1093/nar/30.1.91DOI Listing
January 2002