Roger P Alexander

Roger P Alexander

UNVERIFIED PROFILE

Are you Roger P Alexander?   Register this Author

Register author
Roger P Alexander

Roger P Alexander

Publications by authors named "Roger P Alexander"

Are you Roger P Alexander?   Register this Author

12Publications

371Reads

41Profile Views

Comparative analysis of the transcriptome across distant species.

Nature 2014 Aug;512(7515):445-8

1] Department of Genome Sciences and University of Washington School of Medicine, William H. Foege Building S350D, 1705 Northeast Pacific Street, Box 355065 Seattle, Washington 98195-5065, USA [2].

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4155737PMC
August 2014

Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis.

Viruses 2013 Jul 8;5(7):1664-81. Epub 2013 Jul 8.

Section of Rheumatology, Department of Internal Medicine, Yale University School of Medicine, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/v5071664DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3738954PMC
July 2013

Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.

Authors:
Mark B Gerstein Zhi John Lu Eric L Van Nostrand Chao Cheng Bradley I Arshinoff Tao Liu Kevin Y Yip Rebecca Robilotto Andreas Rechtsteiner Kohta Ikegami Pedro Alves Aurelien Chateigner Marc Perry Mitzi Morris Raymond K Auerbach Xin Feng Jing Leng Anne Vielle Wei Niu Kahn Rhrissorrakrai Ashish Agarwal Roger P Alexander Galt Barber Cathleen M Brdlik Jennifer Brennan Jeremy Jean Brouillet Adrian Carr Ming-Sin Cheung Hiram Clawson Sergio Contrino Luke O Dannenberg Abby F Dernburg Arshad Desai Lindsay Dick Andréa C Dosé Jiang Du Thea Egelhofer Sevinc Ercan Ghia Euskirchen Brent Ewing Elise A Feingold Reto Gassmann Peter J Good Phil Green Francois Gullier Michelle Gutwein Mark S Guyer Lukas Habegger Ting Han Jorja G Henikoff Stefan R Henz Angie Hinrichs Heather Holster Tony Hyman A Leo Iniguez Judith Janette Morten Jensen Masaomi Kato W James Kent Ellen Kephart Vishal Khivansara Ekta Khurana John K Kim Paulina Kolasinska-Zwierz Eric C Lai Isabel Latorre Amber Leahey Suzanna Lewis Paul Lloyd Lucas Lochovsky Rebecca F Lowdon Yaniv Lubling Rachel Lyne Michael MacCoss Sebastian D Mackowiak Marco Mangone Sheldon McKay Desirea Mecenas Gennifer Merrihew David M Miller Andrew Muroyama John I Murray Siew-Loon Ooi Hoang Pham Taryn Phippen Elicia A Preston Nikolaus Rajewsky Gunnar Rätsch Heidi Rosenbaum Joel Rozowsky Kim Rutherford Peter Ruzanov Mihail Sarov Rajkumar Sasidharan Andrea Sboner Paul Scheid Eran Segal Hyunjin Shin Chong Shou Frank J Slack Cindie Slightam Richard Smith William C Spencer E O Stinson Scott Taing Teruaki Takasaki Dionne Vafeados Ksenia Voronina Guilin Wang Nicole L Washington Christina M Whittle Beijing Wu Koon-Kiu Yan Georg Zeller Zheng Zha Mei Zhong Xingliang Zhou Julie Ahringer Susan Strome Kristin C Gunsalus Gos Micklem X Shirley Liu Valerie Reinke Stuart K Kim LaDeana W Hillier Steven Henikoff Fabio Piano Michael Snyder Lincoln Stein Jason D Lieb Robert H Waterston

Science 2010 Dec 22;330(6012):1775-87. Epub 2010 Dec 22.

Program in Computational Biology and Bioinformatics, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/science.1196914DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3142569PMC
December 2010

CheV: CheW-like coupling proteins at the core of the chemotaxis signaling network.

Trends Microbiol 2010 Nov 9;18(11):494-503. Epub 2010 Sep 9.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.tim.2010.07.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2975053PMC
November 2010

Annotating non-coding regions of the genome.

Nat Rev Genet 2010 Aug 13;11(8):559-71. Epub 2010 Jul 13.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nrg2814DOI Listing
August 2010

Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks.

Proc Natl Acad Sci U S A 2010 May 3;107(20):9186-91. Epub 2010 May 3.

Program in Computational Biology and Bioinformatics, Department of Molecular Biophysics and Biochemistry, Yale University, Bass 432, 266 Whitney Avenue, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0914771107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2889091PMC
May 2010

Improved reconstruction of in silico gene regulatory networks by integrating knockout and perturbation data.

PLoS One 2010 Jan 26;5(1):e8121. Epub 2010 Jan 26.

Department of Computer Science, Yale University, New Haven, Connecticut, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0008121PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2811182PMC
January 2010

Understanding modularity in molecular networks requires dynamics.

Sci Signal 2009 Jul 28;2(81):pe44. Epub 2009 Jul 28.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1126/scisignal.281pe44DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4243459PMC
July 2009

Comparative genomic and protein sequence analyses of a complex system controlling bacterial chemotaxis.

Methods Enzymol 2007 ;422:1-31

School of Biology, Georgia Institute of Technology, Atlanta, Georgia, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/S0076-6879(06)22001-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754700PMC
May 2008

Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors.

Proc Natl Acad Sci U S A 2007 Feb 13;104(8):2885-90. Epub 2007 Feb 13.

Center for Bioinformatics and Computational Biology, School of Biology, Georgia Institute of Technology, Atlanta, GA 30332-0230, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1073/pnas.0609359104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1797150PMC
February 2007