Rodrigo V Honorato

Rodrigo V Honorato

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Rodrigo V Honorato

Rodrigo V Honorato

Publications by authors named "Rodrigo V Honorato"

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Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.

Authors:
Marc F Lensink Guillaume Brysbaert Nurul Nadzirin Sameer Velankar Raphaël A G Chaleil Tereza Gerguri Paul A Bates Elodie Laine Alessandra Carbone Sergei Grudinin Ren Kong Ran-Ran Liu Xi-Ming Xu Hang Shi Shan Chang Miriam Eisenstein Agnieszka Karczynska Cezary Czaplewski Emilia Lubecka Agnieszka Lipska Paweł Krupa Magdalena Mozolewska Łukasz Golon Sergey Samsonov Adam Liwo Silvia Crivelli Guillaume Pagès Mikhail Karasikov Maria Kadukova Yumeng Yan Sheng-You Huang Mireia Rosell Luis A Rodríguez-Lumbreras Miguel Romero-Durana Lucía Díaz-Bueno Juan Fernandez-Recio Charles Christoffer Genki Terashi Woong-Hee Shin Tunde Aderinwale Sai Raghavendra Maddhuri Venkata Subraman Daisuke Kihara Dima Kozakov Sandor Vajda Kathryn Porter Dzmitry Padhorny Israel Desta Dmitri Beglov Mikhail Ignatov Sergey Kotelnikov Iain H Moal David W Ritchie Isaure Chauvot de Beauchêne Bernard Maigret Marie-Dominique Devignes Maria E Ruiz Echartea Didier Barradas-Bautista Zhen Cao Luigi Cavallo Romina Oliva Yue Cao Yang Shen Minkyung Baek Taeyong Park Hyeonuk Woo Chaok Seok Merav Braitbard Lirane Bitton Dina Scheidman-Duhovny Justas Dapkūnas Kliment Olechnovič Česlovas Venclovas Petras J Kundrotas Saveliy Belkin Devlina Chakravarty Varsha D Badal Ilya A Vakser Thom Vreven Sweta Vangaveti Tyler Borrman Zhiping Weng Johnathan D Guest Ragul Gowthaman Brian G Pierce Xianjin Xu Rui Duan Liming Qiu Jie Hou Benjamin Ryan Merideth Zhiwei Ma Jianlin Cheng Xiaoqin Zou Panagiotis I Koukos Jorge Roel-Touris Francesco Ambrosetti Cunliang Geng Jörg Schaarschmidt Mikael E Trellet Adrien S J Melquiond Li Xue Brian Jiménez-García Charlotte W van Noort Rodrigo V Honorato Alexandre M J J Bonvin Shoshana J Wodak

Proteins 2019 12 25;87(12):1200-1221. Epub 2019 Oct 25.

VIB Structural Biology Research Center, VUB, Brussels, Belgium.

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http://dx.doi.org/10.1002/prot.25838DOI Listing
December 2019

An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.

Proteins 2019 Dec 30. Epub 2019 Dec 30.

Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands.

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http://dx.doi.org/10.1002/prot.25869DOI Listing
December 2019

Less Is More: Coarse-Grained Integrative Modeling of Large Biomolecular Assemblies with HADDOCK.

J Chem Theory Comput 2019 Nov 10;15(11):6358-6367. Epub 2019 Oct 10.

Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry , Utrecht University , Utrecht 3584CH , The Netherlands.

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http://dx.doi.org/10.1021/acs.jctc.9b00310DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6854652PMC
November 2019

MARTINI-Based Protein-DNA Coarse-Grained HADDOCKing.

Front Mol Biosci 2019 1;6:102. Epub 2019 Oct 1.

Faculty of Science-Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands.

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https://www.frontiersin.org/article/10.3389/fmolb.2019.00102
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http://dx.doi.org/10.3389/fmolb.2019.00102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6779769PMC
October 2019

Calcium and magnesium ions modulate the oligomeric state and function of mitochondrial 2-Cys peroxiredoxins in parasites.

J Biol Chem 2017 04 14;292(17):7023-7039. Epub 2017 Mar 14.

From the Biosciences National Laboratory, National Center for Research in Energy and Materials, Rua Giuseppe Maximo Scolfaro 10000, 13083-100 Campinas/SP, Brazil,

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http://dx.doi.org/10.1074/jbc.M116.762039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5409470PMC
April 2017

Structural studies of the Trypanosoma cruzi Old Yellow Enzyme: insights into enzyme dynamics and specificity.

Biophys Chem 2013 Dec 28;184:44-53. Epub 2013 Aug 28.

Laboratório Nacional de Biociências - LNBio/CNPEM-ABTLuS, Campinas, SP 13083-970, Brazil.

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http://dx.doi.org/10.1016/j.bpc.2013.08.004DOI Listing
December 2013

A specific interdomain interaction preserves the structural and binding properties of the ModA protein from the phytopathogen Xanthomonas citri domain interaction and transport in ModA.

Arch Biochem Biophys 2013 Nov 12;539(1):20-30. Epub 2013 Sep 12.

Laboratório Nacional de Biociências (LNBio), Centro de Pesquisas em Energia e Materiais (CNPEM), Campinas, SP, Brazil.

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http://dx.doi.org/10.1016/j.abb.2013.09.003DOI Listing
November 2013

Structural insights into functional overlapping and differentiation among myosin V motors.

J Biol Chem 2013 Nov 4;288(47):34131-45. Epub 2013 Oct 4.

From the Brazilian Biosciences National Laboratory, National Center for Research in Energy and Materials, Campinas, São Paulo 13083-100, Brazil.

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http://dx.doi.org/10.1074/jbc.M113.507202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3837155PMC
November 2013

Identification of novel interaction between ADAM17 (a disintegrin and metalloprotease 17) and thioredoxin-1.

J Biol Chem 2012 Dec 26;287(51):43071-82. Epub 2012 Oct 26.

Laboratório de Espectrometria de Massas, Laboratório Nacional de Biociências, LNBio, Centro Nacional de Pesquisa em Energia e Materiais, Campinas, Brasil.

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http://dx.doi.org/10.1074/jbc.M112.364513DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3522302PMC
December 2012

Bactericidal activity identified in 2S Albumin from sesame seeds and in silico studies of structure-function relations.

Protein J 2011 Jun;30(5):340-50

Centro de Análises Proteômicas e Bioquímicas, Pós-Graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de Brasília, SGAN Quadra, Modulo B, Brasília, Distrito Federal, Brazil.

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http://link.springer.com/10.1007/s10930-011-9337-x
Publisher Site
http://dx.doi.org/10.1007/s10930-011-9337-xDOI Listing
June 2011