Publications by authors named "Rodrigo A Gutiérrez"

75Publications

Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates.

Proc Natl Acad Sci U S A 2020 06 15;117(23):12531-12540. Epub 2020 May 15.

Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003;

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http://dx.doi.org/10.1073/pnas.1918619117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7293603PMC
June 2020

Nitrate Defines Shoot Size through Compensatory Roles for Endoreplication and Cell Division in Arabidopsis thaliana.

Curr Biol 2020 Jun 16;30(11):1988-2000.e3. Epub 2020 Apr 16.

FONDAP Center for Genome Regulation, Millennium Institute for Integrative Biology (iBio), Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2020.03.036DOI Listing
June 2020

Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana.

Plant Cell Physiol 2020 Feb;61(2):342-352

Departamento de Genética Molecular y Microbiología, FONDAP Center for Genome Regulation, Millennium Institute for Integrative Biology (iBio), Pontificia Universidad Católica de Chile, Santiago 8331150, Chile.

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http://dx.doi.org/10.1093/pcp/pcz199DOI Listing
February 2020

Nitrate and hormonal signaling crosstalk for plant growth and development.

Curr Opin Plant Biol 2019 12 11;52:155-163. Epub 2019 Nov 11.

FONDAP Center for Genome Regulation, Millennium Institute for Integrative Biology (iBio), Chile; Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Avda. Libertador Bernardo O'Higgins 340, Santiago, 8331150, Chile. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2019.10.001DOI Listing
December 2019

iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community.

Mol Plant 2019 06 21;12(6):727-730. Epub 2019 May 21.

B&PMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2019.05.005DOI Listing
June 2019

Multiscale climate change impacts on plant diversity in the Atacama Desert.

Glob Chang Biol 2019 05 25;25(5):1733-1745. Epub 2019 Feb 25.

Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.

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http://doi.wiley.com/10.1111/gcb.14583
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http://dx.doi.org/10.1111/gcb.14583DOI Listing
May 2019

Loop assembly: a simple and open system for recursive fabrication of DNA circuits.

New Phytol 2019 04 25;222(1):628-640. Epub 2019 Feb 25.

Department of Plant Sciences, University of Cambridge, Cambridge, CB2 3EA, UK.

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http://doi.wiley.com/10.1111/nph.15625
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http://dx.doi.org/10.1111/nph.15625DOI Listing
April 2019

Nitrate signaling and the control of Arabidopsis growth and development.

Curr Opin Plant Biol 2019 02 26;47:112-118. Epub 2018 Nov 26.

FONDAP Center for Genome Regulation, Millennium Institute for Integrative Biology (iBio), Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Avda. Libertador Bernardo O'Higgins 340, Santiago, 8331150, Chile. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2018.10.004DOI Listing
February 2019

Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile.

Sci Rep 2018 11 21;8(1):17208. Epub 2018 Nov 21.

Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Avda. Libertador Bernardo O'Higgins 340, Santiago, Chile.

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http://dx.doi.org/10.1038/s41598-018-35299-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6249261PMC
November 2018

Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data.

Methods Mol Biol 2018 ;1761:275-301

Departamento de Genética Molecular y Microbiología, FONDAP Center for Genome Regulation, Millennium Institute for Integrative Systems and Synthetic Biology (MIISSB), Pontificia Universidad Católica de Chile, Santiago, Chile.

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http://dx.doi.org/10.1007/978-1-4939-7747-5_21DOI Listing
January 2019

SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.

J Exp Bot 2018 01;69(3):619-631

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Systems and Synthetic Biology, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.

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http://dx.doi.org/10.1093/jxb/erx423DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853263PMC
January 2018

Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.

Plant J 2017 Oct 31;92(2):305-316. Epub 2017 Aug 31.

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Systems and Synthetic Biology, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.

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http://dx.doi.org/10.1111/tpj.13656DOI Listing
October 2017

Emerging Players in the Nitrate Signaling Pathway.

Mol Plant 2017 08 19;10(8):1019-1022. Epub 2017 Jul 19.

Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, FONDAP Center for Genome Regulation, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile; Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Millennium Nucleus Center for Plant Functional Genomics, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2017.07.006DOI Listing
August 2017

Nitrate signaling and early responses in Arabidopsis roots.

J Exp Bot 2017 05;68(10):2541-2551

FONDAP Center for Genome Regulation. Millennium Nucleus Center for Plant Systems and Synthetic Biology. Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Avenida Libertador Bernardo O'Higgins 340, Santiago, Chile 8331150.

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http://dx.doi.org/10.1093/jxb/erx041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5854014PMC
May 2017

GENIUS: web server to predict local gene networks and key genes for biological functions.

Bioinformatics 2017 03;33(5):760-761

Millennium Nucleus Center for Plant Systems and Synthetic Biology, FONDAP Center for Genome Regulation, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile.

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http://dx.doi.org/10.1093/bioinformatics/btw702DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408817PMC
March 2017

Mapping transcription factor interactome networks using HaloTag protein arrays.

Proc Natl Acad Sci U S A 2016 07 29;113(29):E4238-47. Epub 2016 Jun 29.

Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037; Plant Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA 92037; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037;

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http://dx.doi.org/10.1073/pnas.1603229113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961138PMC
July 2016

Nitrate Transport, Sensing, and Responses in Plants.

Mol Plant 2016 06 19;9(6):837-56. Epub 2016 May 19.

Departamento de Genética Molecular y Microbiología, FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Systems and Synthetic Biology, Pontificia Universidad Católica de Chile, 8331150, Chile. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2016.05.004DOI Listing
June 2016

Members of BTB Gene Family of Scaffold Proteins Suppress Nitrate Uptake and Nitrogen Use Efficiency.

Plant Physiol 2016 06 27;171(2):1523-32. Epub 2016 Apr 27.

Millennium Nucleus Center for Plant Systems and Synthetic Biology, FONDAP Center for Genome Regulation, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile 8331010 (V.A., E.A.V., T.P., S.A., R.A.G.); and CIRAD, UMR AGAP, 34398 Montpellier cedex 5, France (D.M., E.G.)

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http://dx.doi.org/10.1104/pp.15.01731DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4902579PMC
June 2016

Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism.

J Exp Bot 2016 05 25;67(10):3095-108. Epub 2016 Apr 25.

Departamento de Bioquímica Vegetal y Biología Molecular, Facultad de Química, Universidad de Sevilla, C/ Profesor García González, 1, 41012-Sevilla, Spain

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http://dx.doi.org/10.1093/jxb/erw170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4867901PMC
May 2016

Nitrogen cycling in an extreme hyperarid environment inferred from δ(15)N analyses of plants, soils and herbivore diet.

Sci Rep 2016 Mar 9;6:22226. Epub 2016 Mar 9.

Departamento de Ecología, Pontificia Universidad Católica de Chile, Alameda 340, Santiago, Chile.

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http://www.nature.com/articles/srep22226
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http://dx.doi.org/10.1038/srep22226DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4783660PMC
March 2016

The Calcium Ion Is a Second Messenger in the Nitrate Signaling Pathway of Arabidopsis.

Plant Physiol 2015 Oct 24;169(2):1397-404. Epub 2015 Aug 24.

Fondo de Desarrollo de Areas Prioritarias Center for Genome Regulation, Millennium Nucleus Center for Plant Systems and Synthetic Biology, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile 8331010 (E.R., J.M.A., E.A.V., C.O., A.V., R.A.G.); andFacultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile, Santiago, Chile 7820436 (A.V.)

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http://dx.doi.org/10.1104/pp.15.00961DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587466PMC
October 2015

Transcriptional networks in the nitrate response of Arabidopsis thaliana.

Curr Opin Plant Biol 2015 Oct 3;27:125-32. Epub 2015 Aug 3.

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Systems and Synthetic Biology, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331010, Chile. Electronic address:

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http://dx.doi.org/10.1016/j.pbi.2015.06.010DOI Listing
October 2015

Constructing simple biological networks for understanding complex high-throughput data in plants.

Methods Mol Biol 2015 ;1284:503-26

Departamento de Genética Molecular y Microbiología, FONDAP Center for Genome Regulation, Millennium Nucleus for Plant Functional Genomics, Pontificia Universidad Católica de Chile, Santiago, Chile.

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http://dx.doi.org/10.1007/978-1-4939-2444-8_25DOI Listing
November 2015

Nitrogen control of developmental phase transitions in Arabidopsis thaliana.

J Exp Bot 2014 Oct 16;65(19):5611-8. Epub 2014 Aug 16.

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile

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http://dx.doi.org/10.1093/jxb/eru326DOI Listing
October 2014

Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots.

Plant J 2014 Oct 25;80(1):1-13. Epub 2014 Aug 25.

Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, FONDAP Center for Genome Regulation, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile; Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Millennium Nucleus Center for Plant Functional Genomics, Pontificia Universidad Católica de Chile, Santiago 8331150, Chile.

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http://dx.doi.org/10.1111/tpj.12618DOI Listing
October 2014

Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.

Plant Signal Behav 2014 1;9(3):e28501. Epub 2014 Jan 1.

Fondo de Áreas Prioritarias (FONDAP) Center for Genome Regulation; Millennium Nucleus Center for Plant Functional Genomics; Departamento de Genética Molecular y Microbiología; Pontificia Universidad Católica de Chile; Santiago, Chile.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4091544PMC
http://dx.doi.org/10.4161/psb.28501DOI Listing
April 2015

Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments.

Front Plant Sci 2014 7;5:22. Epub 2014 Feb 7.

Department of Molecular Genetics and Microbiology, Faculty of Biological Sciences, FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Pontifical Catholic University of Chile Santiago, Chile.

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http://dx.doi.org/10.3389/fpls.2014.00022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3917222PMC
February 2014

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

BMC Genomics 2013 Oct 11;14:701. Epub 2013 Oct 11.

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago 8331010, Chile.

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http://dx.doi.org/10.1186/1471-2164-14-701DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3906980PMC
October 2013

Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots.

Proc Natl Acad Sci U S A 2013 Jul 11;110(31):12840-5. Epub 2013 Jul 11.

Fondo Nacional de Areas Prioritarias (FONDAP) Center for Genome Regulation, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, 833101, Santiago, Chile.

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http://dx.doi.org/10.1073/pnas.1310937110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3732920PMC
July 2013

Discriminative local subspaces in gene expression data for effective gene function prediction.

Bioinformatics 2012 Sep 20;28(17):2256-64. Epub 2012 Jul 20.

Department of Molecular Genetics and Microbiology, FONDAP Center for Genome Regulation, Pontificia Universidad Catolica de Chile, Santiago, Chile.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1
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http://dx.doi.org/10.1093/bioinformatics/bts455DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3426849PMC
September 2012

Systems biology for enhanced plant nitrogen nutrition.

Science 2012 Jun;336(6089):1673-5

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Avenida Libertador Bernardo O'Higgins 340, Santiago, Chile.

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http://dx.doi.org/10.1126/science.1217620DOI Listing
June 2012

Integration of local and systemic signaling pathways for plant N responses.

Curr Opin Plant Biol 2012 Apr 3;15(2):185-91. Epub 2012 Apr 3.

FONDAP Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Alameda 340, Santiago, Chile.

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http://dx.doi.org/10.1016/j.pbi.2012.03.009DOI Listing
April 2012

A deficiency in the flavoprotein of Arabidopsis mitochondrial complex II results in elevated photosynthesis and better growth in nitrogen-limiting conditions.

Plant Physiol 2011 Nov 15;157(3):1114-27. Epub 2011 Sep 15.

Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Casilla 114-D, Santiago, Chile.

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http://dx.doi.org/10.1104/pp.111.183939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3252148PMC
November 2011

Compatible GLRaV-3 viral infections affect berry ripening decreasing sugar accumulation and anthocyanin biosynthesis in Vitis vinifera.

Plant Mol Biol 2011 Oct 24;77(3):261-74. Epub 2011 Jul 24.

Center for Genome Regulation, Millennium Nucleus Center for Plant Functional Genomics, Departamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Alameda 340, Santiago, Chile.

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http://link.springer.com/10.1007/s11103-011-9807-8
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http://dx.doi.org/10.1007/s11103-011-9807-8DOI Listing
October 2011

A framework integrating plant growth with hormones and nutrients.

Trends Plant Sci 2011 Apr 9;16(4):178-82. Epub 2011 Mar 9.

Center for Genomics and Systems Biology, New York University, 12 Waverly Place, New York, NY 10003, USA.

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http://dx.doi.org/10.1016/j.tplants.2011.02.004DOI Listing
April 2011

A holistic view of nitrogen acquisition in plants.

J Exp Bot 2011 Feb 14;62(4):1455-66. Epub 2011 Jan 14.

Center for Genome Regulation, Millennium Nucleus for Plant Functional Genomics, Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago 8331010, Chile.

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https://academic.oup.com/jxb/article-lookup/doi/10.1093/jxb/
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http://dx.doi.org/10.1093/jxb/erq425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3137434PMC
February 2011

Gene networks for nitrogen sensing, signaling, and response in Arabidopsis thaliana.

Wiley Interdiscip Rev Syst Biol Med 2010 Nov-Dec;2(6):683-93

Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago, Chile.

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http://dx.doi.org/10.1002/wsbm.87DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951390PMC
January 2011

Network news: prime time for systems biology of the plant circadian clock.

Curr Opin Genet Dev 2010 Dec;20(6):588-98

Department of Biological Sciences, Dartmouth College, Hanover, New Hampshire 03755-3576, USA.

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http://dx.doi.org/10.1016/j.gde.2010.08.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098449PMC
December 2010

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.

Proc Natl Acad Sci U S A 2010 Mar 8;107(9):4477-82. Epub 2010 Feb 8.

Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Santiago 8331010, Chile.

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http://dx.doi.org/10.1073/pnas.0909571107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2840086PMC
March 2010

A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus.

Plant Mol Biol 2010 Mar 31;72(4-5):545-56. Epub 2009 Dec 31.

National Health and Environmental Effects Research Laboratory, Western Ecology Division, U.S. Environmental Protection Agency, Office of Research and Development, Corvallis, OR 97333, USA.

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http://dx.doi.org/10.1007/s11103-009-9590-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2816244PMC
March 2010

VirtualPlant: a software platform to support systems biology research.

Plant Physiol 2010 Feb 9;152(2):500-15. Epub 2009 Dec 9.

Center for Genomics and Systems Biology, Department of Biology, New York University, New York, New York 10003, USA.

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http://dx.doi.org/10.1104/pp.109.147025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2815851PMC
February 2010

A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis.

PLoS Comput Biol 2009 Mar 20;5(3):e1000326. Epub 2009 Mar 20.

Center for Genomics & Systems Biology, New York University, Department of Biology, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1000326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2652106PMC
March 2009

Crops in all shapes and sizes.

Genome Biol 2008 11;9(9):319. Epub 2008 Sep 11.

Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Avda, Libertador Bernardo O'Higgins, Santiago, Chile.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2008-9-9-319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2592709PMC
January 2009

A systems view of nitrogen nutrient and metabolite responses in Arabidopsis.

Curr Opin Plant Biol 2008 Oct 3;11(5):521-9. Epub 2008 Sep 3.

Departamento de Genética Molecular y Microbiología, Pontificia Universidad Católica de Chile, Alameda 340, Santiago, Chile.

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http://linkinghub.elsevier.com/retrieve/pii/S136952660800136
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http://dx.doi.org/10.1016/j.pbi.2008.07.003DOI Listing
October 2008

Cell-specific nitrogen responses mediate developmental plasticity.

Proc Natl Acad Sci U S A 2008 Jan 7;105(2):803-8. Epub 2008 Jan 7.

Center for Genomics and Systems Biology, New York University, 100 Washington Square East, New York, NY 10003, USA.

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http://dx.doi.org/10.1073/pnas.0709559105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2206617PMC
January 2008

Insights into the genomic nitrate response using genetics and the Sungear Software System.

J Exp Bot 2007 29;58(9):2359-67. Epub 2007 Apr 29.

Department of Biology, New York University, New York, NY 10003, USA.

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http://dx.doi.org/10.1093/jxb/erm079DOI Listing
October 2007

Sungear: interactive visualization and functional analysis of genomic datasets.

Bioinformatics 2007 Jan 2;23(2):259-61. Epub 2006 Oct 2.

Courant Institute of Mathematical Sciences, New York University, New York, NY, USA.

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http://dx.doi.org/10.1093/bioinformatics/btl496DOI Listing
January 2007

Arabidopsis TCP20 links regulation of growth and cell division control pathways.

Proc Natl Acad Sci U S A 2005 Sep 25;102(36):12978-83. Epub 2005 Aug 25.

Institute for Molecular Plant Science, School of Biological Sciences, University of Edinburgh, EH9 3JR Edinburgh, Scotland.

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http://dx.doi.org/10.1073/pnas.0504039102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1200278PMC
September 2005

Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway.

Plant Physiol 2005 Aug 29;138(4):2374-85. Epub 2005 Jul 29.

Michigan State University-Department of Energy Plant Research Laboratory, Cell and Molecular Biology , Michigan State University, East Lansing, Michigan 48824, USA.

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http://dx.doi.org/10.1104/pp.105.060368DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1183423PMC
August 2005

Systems biology for the virtual plant.

Plant Physiol 2005 Jun;138(2):550-4

Department of Biology, New York University, New York, New York 10003, USA.

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http://dx.doi.org/10.1104/pp.104.900150DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1150368PMC
June 2005

Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis.

Plant Physiol 2004 Sep 27;136(1):2512-22. Epub 2004 Aug 27.

Section of Cell and Developmental Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093-0116, USA.

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http://dx.doi.org/10.1104/pp.104.044610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC523318PMC
September 2004

The plant-specific database. Classification of Arabidopsis proteins based on their phylogenetic profile.

Plant Physiol 2004 Aug;135(4):1888-92

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1312, USA.

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http://dx.doi.org/10.1104/pp.104.043687DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC520760PMC
August 2004

Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms?

Genome Biol 2004 15;5(8):R53. Epub 2004 Jul 15.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1312, USA.

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http://dx.doi.org/10.1186/gb-2004-5-8-r53DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC507878PMC
February 2005

Identification of unstable transcripts in Arabidopsis by cDNA microarray analysis: rapid decay is associated with a group of touch- and specific clock-controlled genes.

Proc Natl Acad Sci U S A 2002 Aug 7;99(17):11513-8. Epub 2002 Aug 7.

Department of Energy Plant Research Laboratory, Michigan State University, East Lansing, MI 48824-1312, USA.

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http://dx.doi.org/10.1073/pnas.152204099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC123287PMC
August 2002