Rod A Wing

Rod A Wing

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Rod A Wing

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The Genomics of Species Provides Insights into Rice Domestication and Heterosis.

Annu Rev Plant Biol 2019 Apr;70:639-665

National Center of Plant Gene Research; Shanghai Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences; and CAS Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200233, China; email:

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http://dx.doi.org/10.1146/annurev-arplant-050718-100320DOI Listing
April 2019

Progress in single-access information systems for wheat and rice crop improvement.

Brief Bioinform 2019 03;20(2):565-571

School of Biological Sciences and Institute of Agriculture, University of Western Australia, 6009 Perth, WA, Australia.

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http://dx.doi.org/10.1093/bib/bby016DOI Listing
March 2019

The rice genome revolution: from an ancient grain to Green Super Rice.

Nat Rev Genet 2018 08;19(8):505-517

Huazhong Agricultural University, Wuhan, China.

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http://dx.doi.org/10.1038/s41576-018-0024-zDOI Listing
August 2018

Comparison of and Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.

Plant Cell 2018 08 2;30(8):1729-1744. Epub 2018 Jul 2.

State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China

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http://dx.doi.org/10.1105/tpc.18.00163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6139686PMC
August 2018

Genetic control of seed shattering during African rice domestication.

Nat Plants 2018 06 4;4(6):331-337. Epub 2018 Jun 4.

MOE Key Laboratory of Crop Heterosis and Utilization, National Center for Evaluation of Agricultural Wild Plants (Rice), Department of Plant Genetics and Breeding, China Agricultural University, Beijing, China.

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http://dx.doi.org/10.1038/s41477-018-0164-3DOI Listing
June 2018

Evolutionary analysis of the SUB1 locus across the Oryza genomes.

Rice (N Y) 2017 Dec 7;10(1). Epub 2017 Feb 7.

Technology Development Center (CDTec), Universidade Federal de Pelotas, Pelotas, Brazil.

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http://dx.doi.org/10.1186/s12284-016-0140-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5296262PMC
December 2017

Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.

Plant Biotechnol J 2017 Jun 23;15(6):765-774. Epub 2017 Jan 23.

Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD, Australia.

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http://dx.doi.org/10.1111/pbi.12674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5425390PMC
June 2017

A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication.

Nat Plants 2017 May 8;3:17064. Epub 2017 May 8.

National Centre for Evaluation of Agricultural Wild Plants (Rice), MOE Key Laboratory of Crop Heterosis and Utilization, Department of Plant Genetics and Breeding, China Agricultural University, Beijing 100193, China.

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http://www.nature.com/articles/nplants201764
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http://dx.doi.org/10.1038/nplants.2017.64DOI Listing
May 2017

The Rice Paradox: Multiple Origins but Single Domestication in Asian Rice.

Mol Biol Evol 2017 04;34(4):969-979

Department of Biology, Center for Genomics and Systems Biology, New York University, New York, NY.

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http://dx.doi.org/10.1093/molbev/msx049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5400379PMC
April 2017

Aflatoxin-free transgenic maize using host-induced gene silencing.

Sci Adv 2017 Mar 10;3(3):e1602382. Epub 2017 Mar 10.

BIO5 Institute, School of Plant Sciences, University of Arizona, 1657 E. Helen Street, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1126/sciadv.1602382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345927PMC
March 2017

The Dark Side of the Genome: Revealing the Native Transposable Element/Repeat Content of Eukaryotic Genomes.

Mol Plant 2016 12 28;9(12):1664-1666. Epub 2016 Sep 28.

Arizona Genomics Institute, BIO5 Institute and School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA; International Rice Research Institute, T.T. Chang Genetic Resources Center, Los Baños, Laguna 63108, Philippines. Electronic address:

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http://dx.doi.org/10.1016/j.molp.2016.09.006DOI Listing
December 2016

Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences.

Bioinformatics 2016 10 17;32(20):3058-3064. Epub 2016 Jun 17.

Arizona Genomics Institute and BIO5 Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA International Rice Research Institute, Genetic Resource Center, Los Baños, Laguna, Philippines.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5048067PMC
http://dx.doi.org/10.1093/bioinformatics/btw370DOI Listing
October 2016

Tracing ancestor rice of Suriname Maroons back to its African origin.

Nat Plants 2016 10 3;2:16149. Epub 2016 Oct 3.

Biosystematics group, Wageningen University, PO Box 16, 6700 AP, Wageningen, The Netherlands.

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http://dx.doi.org/10.1038/nplants.2016.149DOI Listing
October 2016

DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements.

Genome Biol 2016 05 6;17(1):92. Epub 2016 May 6.

Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI, 48202, USA.

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http://dx.doi.org/10.1186/s13059-016-0954-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4858842PMC
May 2016

Evolution of plant genome architecture.

Genome Biol 2016 Mar 1;17:37. Epub 2016 Mar 1.

Arizona Genomics Institute, School of Plant Sciences and Department of Ecology and Evolutionary Biology, Tucson, AZ, 85750, USA.

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http://dx.doi.org/10.1186/s13059-016-0908-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4772531PMC
March 2016

The impact and origin of copy number variations in the Oryza species.

BMC Genomics 2016 Mar 29;17:261. Epub 2016 Mar 29.

State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, 100101, China.

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http://dx.doi.org/10.1186/s12864-016-2589-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4812662PMC
March 2016

Recurrent sequence exchange between homeologous grass chromosomes.

Plant J 2015 Nov;84(4):747-59

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Stadt Seeland, D-06466, Germany.

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http://dx.doi.org/10.1111/tpj.13040DOI Listing
November 2015

Harvesting rice's dispensable genome.

Authors:
Rod A Wing

Genome Biol 2015 Oct 1;16:217. Epub 2015 Oct 1.

University of Arizona, Arizona Genomics Institute, School of Plant Sciences & Department of Ecology and Evolutionary Biology, Tucson, Arizona, 85750, USA.

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http://dx.doi.org/10.1186/s13059-015-0787-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589977PMC
October 2015

Transposons play an important role in the evolution and diversification of centromeres among closely related species.

Front Plant Sci 2015 7;6:216. Epub 2015 Apr 7.

Center for Applied Genetic Technologies, University of Georgia Athens, GA, USA.

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http://dx.doi.org/10.3389/fpls.2015.00216DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4387472PMC
April 2015

Disentangling methodological and biological sources of gene tree discordance on Oryza (Poaceae) chromosome 3.

Syst Biol 2014 Sep 9;63(5):645-59. Epub 2014 Apr 9.

Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA, and Robert W. Holley Center for Agriculture and Health, United States Department of Agriculture-Agricultural Research Service, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1093/sysbio/syu027DOI Listing
September 2014

Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion.

Mol Plant 2014 Apr 8;7(4):642-56. Epub 2013 Nov 8.

Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1093/mp/sst149DOI Listing
April 2014

Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies.

Plant J 2014 Mar 3;77(5):795-805. Epub 2014 Feb 3.

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, China.

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http://dx.doi.org/10.1111/tpj.12412DOI Listing
March 2014

Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes.

PLoS One 2012 21;7(11):e50236. Epub 2012 Nov 21.

State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Science, Beijing, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0050236PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3503983PMC
May 2013

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question.

Curr Opin Plant Biol 2013 May 19;16(2):147-56. Epub 2013 Mar 19.

Arizona Genomics Institute, School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1016/j.pbi.2013.02.014DOI Listing
May 2013

Aluminum tolerance in maize is associated with higher MATE1 gene copy number.

Proc Natl Acad Sci U S A 2013 Mar 11;110(13):5241-6. Epub 2013 Mar 11.

Robert W. Holley Center for Agriculture and Health, US Department of Agriculture-Agricultural Research Service, Cornell University, Ithaca, NY 14853, USA.

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http://dx.doi.org/10.1073/pnas.1220766110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3612656PMC
March 2013

Profiling bacterial diversity and taxonomic composition on speleothem surfaces in Kartchner Caverns, AZ.

Microb Ecol 2013 Feb 9;65(2):371-83. Epub 2012 Dec 9.

Department of Soil, Water and Environmental Science, University of Arizona, Tucson, AZ 85721-0038, USA.

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http://dx.doi.org/10.1007/s00248-012-0143-6DOI Listing
February 2013

Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile.

Extremophiles 2012 May 18;16(3):553-66. Epub 2012 Apr 18.

Department of Soil, Water and Environmental Science, University of Arizona, Shantz Bldg Room 429, P.O. Box 210038, Tucson, AZ 85721-0038, USA.

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http://dx.doi.org/10.1007/s00792-012-0454-zDOI Listing
May 2012

Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against Xanthomonas oryzae in rice.

Mol Plant 2012 Jan 19;5(1):281-90. Epub 2011 Sep 19.

National Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China.

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http://dx.doi.org/10.1093/mp/ssr079DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261417PMC
January 2012

Dynamic intra-japonica subspecies variation and resource application.

Mol Plant 2012 Jan 7;5(1):218-30. Epub 2011 Oct 7.

National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan 430070, China.

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https://linkinghub.elsevier.com/retrieve/pii/S16742052146065
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http://dx.doi.org/10.1093/mp/ssr085DOI Listing
January 2012

Conservation and purifying selection of transcribed genes located in a rice centromere.

Plant Cell 2011 Aug 19;23(8):2821-30. Epub 2011 Aug 19.

Arizona Genomics Institute, School of Plant Sciences, Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona 85721, USA.

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http://dx.doi.org/10.1105/tpc.111.085605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3180794PMC
August 2011

Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis).

J Biomed Biotechnol 2011 23;2011:476723. Epub 2010 Dec 23.

School of Plant Sciences, Arizona Genomics Institute, The University of Arizona, Tucson AZ 85721, USA.

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http://dx.doi.org/10.1155/2011/476723DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017946PMC
July 2011

Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits.

Mol Biol Evol 2010 Nov 4;27(11):2437-40. Epub 2010 Jun 4.

CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, Vairão, Portugal.

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http://dx.doi.org/10.1093/molbev/msq139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2955732PMC
November 2010

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.

Plant J 2010 Aug 6;63(3):430-42. Epub 2010 May 6.

Arizona Genomics Institute, School of Plant Sciences, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USABiodiversity Synthesis Center, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USADepartment of Genetics, University of Georgia, Athens, GA 30602-7223, USAState Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, ChinaDepartment of Agronomy, Purdue University, West Lafayette, IN 47907-2054, USADepartment of Horticulture, Michigan State University, East Lansing, MI 48823, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2010.04251.xDOI Listing
August 2010

Genomic structure and evolution of the Pi2/9 locus in wild rice species.

Theor Appl Genet 2010 Jul 14;121(2):295-309. Epub 2010 Mar 14.

Hunan Provincial Key Laboratory of Crop Germplasm Innovation and Utilization, Hunan Agricultural University, Changsha, China.

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http://dx.doi.org/10.1007/s00122-010-1310-0DOI Listing
July 2010

A lineage-specific centromere retrotransposon in Oryza brachyantha.

Plant J 2009 Dec 21;60(5):820-31. Epub 2009 Aug 21.

Molecular and Evolutionary Genetics, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2009.04005.xDOI Listing
December 2009

The physical and genetic framework of the maize B73 genome.

PLoS Genet 2009 Nov 20;5(11):e1000715. Epub 2009 Nov 20.

Arizona Genomics Institute, Department of Plant Sciences, BIO5 Institute for Collaborative Research, University of Arizona, Tucson, Arizona, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000715DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774505PMC
November 2009

A single molecule scaffold for the maize genome.

PLoS Genet 2009 Nov 20;5(11):e1000711. Epub 2009 Nov 20.

Laboratory for Molecular and Computational Genomics, Department of Chemistry, Laboratory of Genetics, UW Biotechnology Center, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1000711DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774507PMC
November 2009

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Species trees from highly incongruent gene trees in rice.

Syst Biol 2009 Oct 21;58(5):489-500. Epub 2009 Sep 21.

Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA.

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https://academic.oup.com/sysbio/article/58/5/489/1637458
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http://dx.doi.org/10.1093/sysbio/syp054DOI Listing
October 2009

Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors.

Proc Natl Acad Sci U S A 2009 Jun 18;106(22):9063-8. Epub 2009 May 18.

Department of Ecology and Evolutionary Biology, Arizona Genomics Institute, University of Arizona, Tucson, AZ 85721. USA.

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http://dx.doi.org/10.1073/pnas.0900194106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2690004PMC
June 2009

Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes.

Proc Natl Acad Sci U S A 2009 Feb 22;106(6):2071-6. Epub 2009 Jan 22.

State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.

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http://dx.doi.org/10.1073/pnas.0812798106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629783PMC
February 2009

The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.

Mol Plant 2008 Sep 22;1(5):839-50. Epub 2008 Aug 22.

Arizona Genomics Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S167420521460360
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http://dx.doi.org/10.1093/mp/ssn050DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2902912PMC
September 2008

A fruitful outcome to the papaya genome project.

Genome Biol 2008 6;9(6):227. Epub 2008 Jun 6.

Department of Plant Sciences and the Arizona Genomics Institute, University of Arizona, Tucson, AZ 85721, USA.

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http://dx.doi.org/10.1186/gb-2008-9-6-227DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2481413PMC
August 2008

A phylogenetic analysis of indel dynamics in the cotton genus.

Mol Biol Evol 2008 Jul 9;25(7):1415-28. Epub 2008 Apr 9.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Iowa, USA.

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http://dx.doi.org/10.1093/molbev/msn085DOI Listing
July 2008

Evidence of multiple horizontal transfers of the long terminal repeat retrotransposon RIRE1 within the genus Oryza.

Plant J 2008 Mar 6;53(6):950-9. Epub 2007 Dec 6.

Laboratoire Génome et Développement des Plantes, UMR 5096 CNRS-IRD-Université de Perpignan, 52, avenue Paul Alduy, 66860 Perpignan, France.

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http://dx.doi.org/10.1111/j.1365-313X.2007.03388.xDOI Listing
March 2008

The Rice Annotation Project Database (RAP-DB): 2008 update.

Nucleic Acids Res 2008 Jan 17;36(Database issue):D1028-33. Epub 2007 Dec 17.

National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan.

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http://dx.doi.org/10.1093/nar/gkm978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2238920PMC
January 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude 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Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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November 2007

Evolutionary history and positional shift of a rice centromere.

Genetics 2007 Oct 29;177(2):1217-20. Epub 2007 Jul 29.

Department of Agronomy, Purdue University, West Lafayette, Indiana 47907, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2034625PMC
October 2007

Transposable element distribution, abundance and role in genome size variation in the genus Oryza.

BMC Evol Biol 2007 Aug 29;7:152. Epub 2007 Aug 29.

Arizona Genomics Institute, Department of Plant Sciences, BIO5 Institute, University of Arizona, Tucson, AZ 85721, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2041954PMC
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Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

Plant J 2007 Jun 25;50(6):995-1006. Epub 2007 Apr 25.

Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.

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June 2007

Pulsed-field gel electrophoresis for long-range restriction mapping.

Curr Protoc Hum Genet 2002 Feb;Chapter 5:Unit5.1

Eleanor Roosevelt Institute for Cancer Research, Denver, Colorado, USA.

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February 2002