Robi D Mitra

Robi D Mitra

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Robi D Mitra

Robi D Mitra

Publications by authors named "Robi D Mitra"

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49Publications

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Accurate Typing of Human Leukocyte Antigen Class I Genes by Oxford Nanopore Sequencing.

J Mol Diagn 2018 Jul 3;20(4):428-435. Epub 2018 Apr 3.

Division of Laboratory and Genomic Medicine, and the Department of Genetics, Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri. Electronic address:

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July 2018

Massively parallel single-nucleotide mutagenesis using reversibly terminated inosine.

Nat Methods 2016 Nov 3;13(11):923-924. Epub 2016 Oct 3.

Department of Orthopaedic Surgery, Washington University, St. Louis, Missouri, USA.

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November 2016

Calling Card Analysis in Budding Yeast.

Cold Spring Harb Protoc 2016 Feb 1;2016(2):pdb.prot086918. Epub 2016 Feb 1.

Department of Genetics, Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, Missouri 63110.

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February 2016

Transposon Calling Cards.

Cold Spring Harb Protoc 2016 Feb 1;2016(2):pdb.top077776. Epub 2016 Feb 1.

Department of Genetics, Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, Missouri 63110.

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February 2016

Redesign of the monomer-monomer interface of Cre recombinase yields an obligate heterotetrameric complex.

Nucleic Acids Res 2015 Oct 13;43(18):9076-85. Epub 2015 Sep 13.

Department of Biochemistry and Molecular Biophysics, Washington University in St Louis, St Louis, MO 63110, USA

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October 2015

Toying with fate: Redirecting the differentiation of adrenocortical progenitor cells into gonadal-like tissue.

Mol Cell Endocrinol 2015 Jun 8;408:165-77. Epub 2014 Dec 8.

Department of Pediatrics, Washington University School of Medicine, St. Louis Children's Hospital, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University School of Medicine, St. Louis Children's Hospital, St. Louis, MO 63110, USA. Electronic address:

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June 2015

PDE7B is a novel, prognostically significant mediator of glioblastoma growth whose expression is regulated by endothelial cells.

PLoS One 2014 9;9(9):e107397. Epub 2014 Sep 9.

Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, United States of America; Department of Anatomy and Neurobiology, Washington University School of Medicine, St. Louis, Missouri, United States of America.

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May 2015

Novel markers of gonadectomy-induced adrenocortical neoplasia in the mouse and ferret.

Mol Cell Endocrinol 2015 Jan 5;399:122-30. Epub 2014 Oct 5.

Department of Pediatrics, Washington University School of Medicine, St. Louis Children's Hospital, St. Louis, MO 63110, USA; Department of Developmental Biology, Washington University School of Medicine, St. Louis Children's Hospital, St. Louis, MO 63110, USA. Electronic address:

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January 2015

Sequencing of idiopathic pulmonary fibrosis-related genes reveals independent single gene associations.

BMJ Open Respir Res 2014 10;1(1):e000057. Epub 2014 Dec 10.

Division of Newborn Medicine, Edward Mallinckrodt Department of Pediatrics , Washington University School of Medicine , St. Louis, Missouri , USA ; Division of Neonatology, Department of Pediatrics , Ann and Robert H. Lurie Children's Hospital of Chicago, Northwestern University Feinberg School of Medicine , Chicago, Illinois , USA.

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January 2015

Transcription factor regulation and chromosome dynamics during pseudohyphal growth.

Mol Biol Cell 2014 Sep 9;25(17):2669-76. Epub 2014 Jul 9.

Department of Genetics and Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108

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September 2014

Synonymous ABCA3 variants do not increase risk for neonatal respiratory distress syndrome.

J Pediatr 2014 Jun 20;164(6):1316-21.e3. Epub 2014 Mar 20.

Edward Mallinckrodt Department of Pediatrics, Washington University School of Medicine, St. Louis, MO.

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June 2014

Gene expression analysis of zebrafish melanocytes, iridophores, and retinal pigmented epithelium reveals indicators of biological function and developmental origin.

PLoS One 2013 9;8(7):e67801. Epub 2013 Jul 9.

Department of Genetics, Washington University, St. Louis, Missouri, United States of America.

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February 2014

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing.

Nucleic Acids Res 2013 Aug 8;41(14):e142. Epub 2013 Jun 8.

Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.

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August 2013

Laser capture microdissection-reduced representation bisulfite sequencing (LCM-RRBS) maps changes in DNA methylation associated with gonadectomy-induced adrenocortical neoplasia in the mouse.

Nucleic Acids Res 2013 Jun 15;41(11):e116. Epub 2013 Apr 15.

Department of Genetics, Center for Genome Sciences, Washington University School of Medicine, 4444 Forest Park Parkway, St. Louis, Missouri 63110, USA.

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June 2013

Ultralow protein adsorbing coatings from clickable PEG nanogel solutions: benefits of attachment under salt-induced phase separation conditions and comparison with PEG/albumin nanogel coatings.

Langmuir 2013 Mar 11;29(12):4128-39. Epub 2013 Mar 11.

Department of Biomedical Engineering, Washington University in St. Louis, St. Louis, Missouri 63130, United States.

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March 2013

Functional characterization of piggyBat from the bat Myotis lucifugus unveils an active mammalian DNA transposon.

Proc Natl Acad Sci U S A 2013 Jan 17;110(1):234-9. Epub 2012 Dec 17.

Howard Hughes Medical Institute and Department of Molecular Biology and Genetics, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.

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January 2013

Single ABCA3 mutations increase risk for neonatal respiratory distress syndrome.

Pediatrics 2012 Dec 19;130(6):e1575-82. Epub 2012 Nov 19.

Division of Newborn Medicine, The Edward Mallinckrodt Department of Pediatrics, Washington University School of Medicine, St Louis, MO 63110.

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December 2012

A systematic study of gene expression variation at single-nucleotide resolution reveals widespread regulatory roles for uAUGs.

Genome Res 2012 Jun 27;22(6):1089-97. Epub 2012 Mar 27.

Department of Genetics, Center for Genome Sciences and Systems Biology, Washington University School of Medicine, St. Louis, MO 63108, USA.

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June 2012

Detection of rare genomic variants from pooled sequencing using SPLINTER.

J Vis Exp 2012 Jun 23(64). Epub 2012 Jun 23.

Center for Genome Sciences and Systems Biology, Department of Genetics, Washington University School of Medicine.

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June 2012

Sensitive single-molecule protein quantification and protein complex detection in a microarray format.

Proteomics 2011 Dec 23;11(24):4731-5. Epub 2011 Nov 23.

Department of Genetics, Center for Genome Sciences and Systems Biology, Washington University, St. Louis, MO 63108, USA.

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December 2011

Nanogel surface coatings for improved single-molecule imaging substrates.

J R Soc Interface 2011 Oct 16;8(63):1400-8. Epub 2011 Feb 16.

Department of Genetics and Center for Genome Sciences, Washington University School of Medicine, 4444 Forest Park Parkway, Campus Box 8510, St. Louis, MO 63108, USA.

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October 2011

High-throughput discovery of rare insertions and deletions in large cohorts.

Genome Res 2010 Dec 1;20(12):1711-8. Epub 2010 Nov 1.

Center for Genome Sciences and Systems Biology, Department of Genetics, Washington University in St. Louis School of Medicine, St. Louis, Missouri 63108, USA.

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December 2010

TATA is a modular component of synthetic promoters.

Genome Res 2010 Oct 13;20(10):1391-7. Epub 2010 Jul 13.

Center for Genome Sciences, Department of Genetics, Washington University in St. Louis School of Medicine, St. Louis, Missouri 63108, USA.

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October 2010

Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy, revealing HSPB7 polymorphisms associated with disease.

J Clin Invest 2010 Jan 14;120(1):280-9. Epub 2009 Dec 14.

Center for Pharmacogenomics, Department of Medicine, Washington University School of Medicine, 660 S. Eucliud Avenue, St. Louis, Missouri 63110, USA.

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January 2010

Protein quantification in complex mixtures by solid phase single-molecule counting.

Anal Chem 2009 Sep;81(17):7141-8

Center for Genome Sciences, Department of Genetics, Washington University in St. Louis School of Medicine, 4444 Forest Park Avenue, St. Louis, Missouri 63108, USA.

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September 2009

Identifying genetic determinants needed to establish a human gut symbiont in its habitat.

Cell Host Microbe 2009 Sep;6(3):279-89

Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.

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September 2009

Intra-tumor heterogeneity of MLH1 promoter methylation revealed by deep single molecule bisulfite sequencing.

Nucleic Acids Res 2009 Aug 3;37(14):4603-12. Epub 2009 Jun 3.

Department of Genetics, Center for Genome Sciences, Washington University School of Medicine, St Louis, Missouri, USA.

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August 2009

Nested Patch PCR for highly multiplexed amplification of genomic loci.

Cold Spring Harb Protoc 2009 Jul;2009(7):pdb.prot5252

Department of Genetics, Center for Genome Sciences, Washington University School of Medicine, St. Louis, MO 63108, USA.

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July 2009

Quantification of rare allelic variants from pooled genomic DNA.

Nat Methods 2009 Apr 1;6(4):263-5. Epub 2009 Mar 1.

Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA.

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April 2009

'Calling Cards' method for high-throughput identification of targets of yeast DNA-binding proteins.

Nat Protoc 2008 ;3(10):1569-77

Department of Genetics, Washington University, School of Medicine, Genome Sequencing Center, St Louis, Missouri 63108, USA.

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December 2008

Bedraggled, a putative transporter, influences the tissue polarity complex during the R3/R4 fate decision in the Drosophila eye.

Genetics 2007 Sep;177(1):313-28

Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110, USA.

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September 2007

Long-range polony haplotyping of individual human chromosome molecules.

Nat Genet 2006 Mar 19;38(3):382-7. Epub 2006 Feb 19.

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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March 2006

Accurate multiplex polony sequencing of an evolved bacterial genome.

Science 2005 Sep 4;309(5741):1728-32. Epub 2005 Aug 4.

Department of Genetics, Harvard Medical School, Boston, MA 02115, USA.

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September 2005

Advanced sequencing technologies: methods and goals.

Nat Rev Genet 2004 May;5(5):335-44

Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.

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May 2004

Digital quantitative measurements of gene expression.

Biotechnol Bioeng 2004 Apr;86(2):117-24

Department of Chemical Engineering, University of Delaware, Newark, Delaware 19716, USA.

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April 2004

Fluorescent in situ sequencing on polymerase colonies.

Anal Biochem 2003 Sep;320(1):55-65

Lipper Center for Computational Genetics, Harvard Medical School, 200 Longwood Ave., Boston, MA 02115, USA.

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September 2003

Parallel competition analysis of Saccharomyces cerevisiae strains differing by a single base using polymerase colonies.

Nucleic Acids Res 2003 Aug;31(15):e84

Department of Chemical Engineering, University of Delaware, Newark, DE 19716, USA.

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August 2003

Single molecule profiling of alternative pre-mRNA splicing.

Science 2003 Aug;301(5634):836-8

Department of Genetics, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA.

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August 2003

Digital genotyping and haplotyping with polymerase colonies.

Proc Natl Acad Sci U S A 2003 May 2;100(10):5926-31. Epub 2003 May 2.

Lipper Center for Computational Genetics and Department of Genetics, Harvard Medical School, 200 Longwood Avenue, Boston, MA 02115, USA.

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May 2003

Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks.

Mol Biol Cell 2002 May;13(5):1608-14

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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May 2002