Robert L Strausberg

Robert L Strausberg

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Robert L Strausberg

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Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer.

Sci Transl Med 2016 07;8(346):346ra92

Division of Systems Biology and Personalised Medicine, Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria 3052, Australia. Department of Medical Oncology, Western Health, St Albans, Victoria 3021, Australia. Department of Medical Oncology, Faculty of Medicine, Dentistry and Health Sciences, University of Melbourne, Parkville, Victoria 3010, Australia. Ludwig Institute for Cancer Research, New York, NY 10017, USA.

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http://stm.sciencemag.org/content/8/346/346ra92.full.pdf
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http://dx.doi.org/10.1126/scitranslmed.aaf6219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5346159PMC
July 2016

Altered Expression and Splicing of ESRP1 in Malignant Melanoma Correlates with Epithelial-Mesenchymal Status and Tumor-Associated Immune Cytolytic Activity.

Cancer Immunol Res 2016 06 4;4(6):552-61. Epub 2016 Apr 4.

Ludwig Collaborative Laboratory, Johns Hopkins University School of Medicine, Baltimore, Maryland. Regeneron Pharmaceuticals Inc., Tarrytown, New York.

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http://dx.doi.org/10.1158/2326-6066.CIR-15-0255DOI Listing
June 2016

Colorectal cancer cell lines are representative models of the main molecular subtypes of primary cancer.

Cancer Res 2014 Jun 22;74(12):3238-47. Epub 2014 Apr 22.

Authors' Affiliations: Ludwig Institute for Cancer Research; Systems Biology and Personalised Medicine Division; Structural Biology Division; Walter and Eliza Hall Institute of Medical Research; Faculty of Medicine, Dentistry and Health Sciences, Department of Medical Biology, University of Melbourne, Parkville; VLSCI Life Sciences Computation Centre, a collaboration between Melbourne, Monash and LaTrobe Universities, c/o The University of Melbourne, Carlton; Oncogenic Transcription Laboratory, Ludwig Institute for Cancer Research, Austin, VIC, Australia; Cancer and Population Studies Group, Queensland Institute of Medical Research, Herston, QLD, Australia; Group of Molecular Oncology, CIBBIM-Nanomedicine, Vall d'Hebron University Hospital, Research Institute (VHIR), Universitat Autònoma de Barcelona, Passeig Vall d'Hebron, 119-129, 08035 Barcelona; CIBER de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN); Spain; Ludwig Collaborative Laboratory for Cancer Biology and Therapy, Department of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, Maryland; Ludwig Institute for Cancer Research Ltd., New York, New York; Cancer and Immunogenetics Laboratory, Weatherall Institute of Molecular Medicine (WIMM), John Radcliffe Hospital, University of Oxford; and Molecular and Population Genetics Laboratory, Wellcome Trust Centre for Human Genetics, Oxford, United KingdomAuthors' Affiliations: Ludwig Institute for Cancer Research; Systems Biology and Personalised Medicine Division; Structural Biology Division; Walter and Eliza Hall Institute of Medical Research; Faculty of Medicine, Dentistry and Health Sciences, Department of Medical Biology, University of Melbourne, Parkville; VLSCI Life Sciences Computation Centre, a collaboration between Melbourne, Monash and LaTrobe Universities, c/o The University of Melbourne, Carlton; Oncogenic Transcription Laboratory, Ludwig Institute for Cancer Research, Austin, VIC, Australia; Cancer and Population Studies

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http://dx.doi.org/10.1158/0008-5472.CAN-14-0013DOI Listing
June 2014

Tumor subtype-specific cancer-testis antigens as potential biomarkers and immunotherapeutic targets for cancers.

Cancer Immunol Res 2014 Apr 25;2(4):371-9. Epub 2013 Nov 25.

Authors' Affiliations: Departments of Ludwig Collaborative Laboratory, Department of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, Maryland.

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http://dx.doi.org/10.1158/2326-6066.CIR-13-0088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4007352PMC
April 2014

Differential evolution of MAGE genes based on expression pattern and selection pressure.

PLoS One 2012 25;7(10):e48240. Epub 2012 Oct 25.

Ludwig Collaborative Laboratory, Department of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0048240PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3484994PMC
May 2013

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.

Science 2010 Oct;330(6000):86-8

Center for Disease Vector Research, University of California Riverside, Riverside, CA 92521, USA.

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http://dx.doi.org/10.1126/science.1191864DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3740384PMC
October 2010

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.

Proc Natl Acad Sci U S A 2010 Jul 21;107(27):12168-73. Epub 2010 Jun 21.

J Craig Venter Institute, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1073/pnas.1003379107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2901460PMC
July 2010

A catalog of reference genomes from the human microbiome.

Science 2010 May;328(5981):994-9

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http://dx.doi.org/10.1126/science.1183605DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2940224PMC
May 2010

The dynamic genome of Hydra.

Nature 2010 Mar 14;464(7288):592-6. Epub 2010 Mar 14.

US Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.

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http://dx.doi.org/10.1038/nature08830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479502PMC
March 2010

Evaluation of next generation sequencing platforms for population targeted sequencing studies.

Genome Biol 2009 27;10(3):R32. Epub 2009 Mar 27.

Scripps Genomic Medicine, Scripps Translational Science Institute, The Scripps Research Institute, La Jolla, CA 92037, USA.

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http://dx.doi.org/10.1186/gb-2009-10-3-r32DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2691003PMC
July 2009

The HuRef Browser: a web resource for individual human genomics.

Nucleic Acids Res 2009 Jan 26;37(Database issue):D1018-24. Epub 2008 Nov 26.

J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1093/nar/gkn939DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686481PMC
January 2009

Human genetics: Individual genomes diversify.

Nature 2008 Nov;456(7218):49-51

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http://dx.doi.org/10.1038/456049aDOI Listing
November 2008

Emerging DNA sequencing technologies for human genomic medicine.

Drug Discov Today 2008 Jul 22;13(13-14):569-77. Epub 2008 May 22.

J. Craig Venter Institute, Rockville, MD 20850, USA.

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http://linkinghub.elsevier.com/retrieve/pii/S135964460800124
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http://dx.doi.org/10.1016/j.drudis.2008.03.025DOI Listing
July 2008

Evolution of genes and genomes on the Drosophila phylogeny.

Authors:
Andrew G Clark Michael B Eisen Douglas R Smith Casey M Bergman Brian Oliver Therese A Markow Thomas C Kaufman Manolis Kellis William Gelbart Venky N Iyer Daniel A Pollard Timothy B Sackton Amanda M Larracuente Nadia D Singh Jose P Abad Dawn N Abt Boris Adryan Montserrat Aguade Hiroshi Akashi Wyatt W Anderson Charles F Aquadro David H Ardell Roman Arguello Carlo G Artieri Daniel A Barbash Daniel Barker Paolo Barsanti Phil Batterham Serafim Batzoglou Dave Begun Arjun Bhutkar Enrico Blanco Stephanie A Bosak Robert K Bradley Adrianne D Brand Michael R Brent Angela N Brooks Randall H Brown Roger K Butlin Corrado Caggese Brian R Calvi A Bernardo de Carvalho Anat Caspi Sergio Castrezana Susan E Celniker Jean L Chang Charles Chapple Sourav Chatterji Asif Chinwalla Alberto Civetta Sandra W Clifton Josep M Comeron James C Costello Jerry A Coyne Jennifer Daub Robert G David Arthur L Delcher Kim Delehaunty Chuong B Do Heather Ebling Kevin Edwards Thomas Eickbush Jay D Evans Alan Filipski Sven Findeiss Eva Freyhult Lucinda Fulton Robert Fulton Ana C L Garcia Anastasia Gardiner David A Garfield Barry E Garvin Greg Gibson Don Gilbert Sante Gnerre Jennifer Godfrey Robert Good Valer Gotea Brenton Gravely Anthony J Greenberg Sam Griffiths-Jones Samuel Gross Roderic Guigo Erik A Gustafson Wilfried Haerty Matthew W Hahn Daniel L Halligan Aaron L Halpern Gillian M Halter Mira V Han Andreas Heger LaDeana Hillier Angie S Hinrichs Ian Holmes Roger A Hoskins Melissa J Hubisz Dan Hultmark Melanie A Huntley David B Jaffe Santosh Jagadeeshan William R Jeck Justin Johnson Corbin D Jones William C Jordan Gary H Karpen Eiko Kataoka Peter D Keightley Pouya Kheradpour Ewen F Kirkness Leonardo B Koerich Karsten Kristiansen Dave Kudrna Rob J Kulathinal Sudhir Kumar Roberta Kwok Eric Lander Charles H Langley Richard Lapoint Brian P Lazzaro So-Jeong Lee Lisa Levesque Ruiqiang Li Chiao-Feng Lin Michael F Lin Kerstin Lindblad-Toh Ana Llopart Manyuan Long Lloyd Low Elena Lozovsky Jian Lu Meizhong Luo Carlos A Machado Wojciech Makalowski Mar Marzo Muneo Matsuda Luciano Matzkin Bryant McAllister Carolyn S McBride Brendan McKernan Kevin McKernan Maria Mendez-Lago Patrick Minx Michael U Mollenhauer Kristi Montooth Stephen M Mount Xu Mu Eugene Myers Barbara Negre Stuart Newfeld Rasmus Nielsen Mohamed A F Noor Patrick O'Grady Lior Pachter Montserrat Papaceit Matthew J Parisi Michael Parisi Leopold Parts Jakob S Pedersen Graziano Pesole Adam M Phillippy Chris P Ponting Mihai Pop Damiano Porcelli Jeffrey R Powell Sonja Prohaska Kim Pruitt Marta Puig Hadi Quesneville Kristipati Ravi Ram David Rand Matthew D Rasmussen Laura K Reed Robert Reenan Amy Reily Karin A Remington Tania T Rieger Michael G Ritchie Charles Robin Yu-Hui Rogers Claudia Rohde Julio Rozas Marc J Rubenfield Alfredo Ruiz Susan Russo Steven L Salzberg Alejandro Sanchez-Gracia David J Saranga Hajime Sato Stephen W Schaeffer Michael C Schatz Todd Schlenke Russell Schwartz Carmen Segarra Rama S Singh Laura Sirot Marina Sirota Nicholas B Sisneros Chris D Smith Temple F Smith John Spieth Deborah E Stage Alexander Stark Wolfgang Stephan Robert L Strausberg Sebastian Strempel David Sturgill Granger Sutton Granger G Sutton Wei Tao Sarah Teichmann Yoshiko N Tobari Yoshihiko Tomimura Jason M Tsolas Vera L S Valente Eli Venter J Craig Venter Saverio Vicario Filipe G Vieira Albert J Vilella Alfredo Villasante Brian Walenz Jun Wang Marvin Wasserman Thomas Watts Derek Wilson Richard K Wilson Rod A Wing Mariana F Wolfner Alex Wong Gane Ka-Shu Wong Chung-I Wu Gabriel Wu Daisuke Yamamoto Hsiao-Pei Yang Shiaw-Pyng Yang James A Yorke Kiyohito Yoshida Evgeny Zdobnov Peili Zhang Yu Zhang Aleksey V Zimin Jennifer Baldwin Amr Abdouelleil Jamal Abdulkadir Adal Abebe Brikti Abera Justin Abreu St Christophe Acer Lynne Aftuck Allen Alexander Peter An Erica Anderson Scott Anderson Harindra Arachi Marc Azer Pasang Bachantsang Andrew Barry Tashi Bayul Aaron Berlin Daniel Bessette Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Imane Bourzgui Adam Brown Patrick Cahill Sheridon Channer Yama Cheshatsang Lisa Chuda Mieke Citroen Alville Collymore Patrick Cooke Maura Costello Katie D'Aco Riza Daza Georgius De Haan Stuart DeGray Christina DeMaso Norbu Dhargay Kimberly Dooley Erin Dooley Missole Doricent Passang Dorje Kunsang Dorjee Alan Dupes Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Sheila Fisher Chelsea D Foley Alicia Franke Dennis Friedrich Loryn Gadbois Gary Gearin Christina R Gearin Georgia Giannoukos Tina Goode Joseph Graham Edward Grandbois Sharleen Grewal Kunsang Gyaltsen Nabil Hafez Birhane Hagos Jennifer Hall Charlotte Henson Andrew Hollinger Tracey Honan Monika D Huard Leanne Hughes Brian Hurhula M Erii Husby Asha Kamat Ben Kanga Seva Kashin Dmitry Khazanovich Peter Kisner Krista Lance Marcia Lara William Lee Niall Lennon Frances Letendre Rosie LeVine Alex Lipovsky Xiaohong Liu Jinlei Liu Shangtao Liu Tashi Lokyitsang Yeshi Lokyitsang Rakela Lubonja Annie Lui Pen MacDonald Vasilia Magnisalis Kebede Maru Charles Matthews William McCusker Susan McDonough Teena Mehta James Meldrim Louis Meneus Oana Mihai Atanas Mihalev Tanya Mihova Rachel Mittelman Valentine Mlenga Anna Montmayeur Leonidas Mulrain Adam Navidi Jerome Naylor Tamrat Negash Thu Nguyen Nga Nguyen Robert Nicol Choe Norbu Nyima Norbu Nathaniel Novod Barry O'Neill Sahal Osman Eva Markiewicz Otero L Oyono Christopher Patti Pema Phunkhang Fritz Pierre Margaret Priest Sujaa Raghuraman Filip Rege Rebecca Reyes Cecil Rise Peter Rogov Keenan Ross Elizabeth Ryan Sampath Settipalli Terry Shea Ngawang Sherpa Lu Shi Diana Shih Todd Sparrow Jessica Spaulding John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Christopher Strader Senait Tesfaye Talene Thomson Yama Thoulutsang Dawa Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Geneva Young Qing Yu Lisa Zembek Danni Zhong Andrew Zimmer Zac Zwirko David B Jaffe Pablo Alvarez Will Brockman Jonathan Butler CheeWhye Chin Sante Gnerre Manfred Grabherr Michael Kleber Evan Mauceli Iain MacCallum

Nature 2007 Nov;450(7167):203-18

Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.

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http://dx.doi.org/10.1038/nature06341DOI Listing
November 2007

Promoting transcriptome diversity.

Genome Res 2007 Jul;17(7):965-8

The J. Craig Venter Institute, Rockville, Maryland 20850, USA.

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http://www.genome.org/cgi/doi/10.1101/gr.6499807
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http://dx.doi.org/10.1101/gr.6499807DOI Listing
July 2007

Evolutionary and biomedical insights from the rhesus macaque genome.

Authors:
Richard A Gibbs Jeffrey Rogers Michael G Katze Roger Bumgarner George M Weinstock Elaine R Mardis Karin A Remington Robert L Strausberg J Craig Venter Richard K Wilson Mark A Batzer Carlos D Bustamante Evan E Eichler Matthew W Hahn Ross C Hardison Kateryna D Makova Webb Miller Aleksandar Milosavljevic Robert E Palermo Adam Siepel James M Sikela Tony Attaway Stephanie Bell Kelly E Bernard Christian J Buhay Mimi N Chandrabose Marvin Dao Clay Davis Kimberly D Delehaunty Yan Ding Huyen H Dinh Shannon Dugan-Rocha Lucinda A Fulton Ramatu Ayiesha Gabisi Toni T Garner Jennifer Godfrey Alicia C Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan Ewen F Kirkness Andrew Cree R Gerald Fowler Sandra Lee Lora R Lewis Zhangwan Li Yih-Shin Liu Stephanie M Moore Donna Muzny Lynne V Nazareth Dinh Ngoc Ngo Geoffrey O Okwuonu Grace Pai David Parker Heidie A Paul Cynthia Pfannkoch Craig S Pohl Yu-Hui Rogers San Juana Ruiz Aniko Sabo Jireh Santibanez Brian W Schneider Scott M Smith Erica Sodergren Amanda F Svatek Teresa R Utterback Selina Vattathil Wesley Warren Courtney Sherell White Asif T Chinwalla Yucheng Feng Aaron L Halpern Ladeana W Hillier Xiaoqiu Huang Pat Minx Joanne O Nelson Kymberlie H Pepin Xiang Qin Granger G Sutton Eli Venter Brian P Walenz John W Wallis Kim C Worley Shiaw-Pyng Yang Steven M Jones Marco A Marra Mariano Rocchi Jacqueline E Schein Robert Baertsch Laura Clarke Miklós Csürös Jarret Glasscock R Alan Harris Paul Havlak Andrew R Jackson Huaiyang Jiang Yue Liu David N Messina Yufeng Shen Henry Xing-Zhi Song Todd Wylie Lan Zhang Ewan Birney Kyudong Han Miriam K Konkel Jungnam Lee Arian F A Smit Brygg Ullmer Hui Wang Jinchuan Xing Richard Burhans Ze Cheng John E Karro Jian Ma Brian Raney Xinwei She Michael J Cox Jeffery P Demuth Laura J Dumas Sang-Gook Han Janet Hopkins Anis Karimpour-Fard Young H Kim Jonathan R Pollack Tomas Vinar Charles Addo-Quaye Jeremiah Degenhardt Alexandra Denby Melissa J Hubisz Amit Indap Carolin Kosiol Bruce T Lahn Heather A Lawson Alison Marklein Rasmus Nielsen Eric J Vallender Andrew G Clark Betsy Ferguson Ryan D Hernandez Kashif Hirani Hildegard Kehrer-Sawatzki Jessica Kolb Shobha Patil Ling-Ling Pu Yanru Ren David Glenn Smith David A Wheeler Ian Schenck Edward V Ball Rui Chen David N Cooper Belinda Giardine Fan Hsu W James Kent Arthur Lesk David L Nelson William E O'brien Kay Prüfer Peter D Stenson James C Wallace Hui Ke Xiao-Ming Liu Peng Wang Andy Peng Xiang Fan Yang Galt P Barber David Haussler Donna Karolchik Andy D Kern Robert M Kuhn Kayla E Smith Ann S Zwieg

Science 2007 Apr;316(5822):222-34

Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1126/science.1139247DOI Listing
April 2007

High expression of a cytokeratin-associated protein in many cancers.

Proc Natl Acad Sci U S A 2006 Apr 3;103(15):5929-34. Epub 2006 Apr 3.

South Dakota Health Research Foundation-Signal Transduction Institute, University of South Dakota School of Medicine and Sioux Valley Hospitals and Health System, Sioux Falls, SD 57105, USA.

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http://dx.doi.org/10.1073/pnas.0601296103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1458675PMC
April 2006

Tumor microenvironments, the immune system and cancer survival.

Genome Biol 2005 1;6(3):211. Epub 2005 Mar 1.

J, Craig Venter Institute, 9,704 Medical Center Drive, Rockville, MD 20850, USA.

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http://genomebiology.biomedcentral.com/articles/10.1186/gb-2
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http://dx.doi.org/10.1186/gb-2005-6-3-211DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1088935PMC
March 2006

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

Genome Res 2005 Jul;15(7):1007-14

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.

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http://dx.doi.org/10.1101/gr.4041005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1172045PMC
July 2005

Mutation of GATA3 in human breast tumors.

Oncogene 2004 Oct;23(46):7669-78

Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA.

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http://dx.doi.org/10.1038/sj.onc.1207966DOI Listing
October 2004

Integrative annotation of 21,037 human genes validated by full-length cDNA clones.

Authors:
Tadashi Imanishi Takeshi Itoh Yutaka Suzuki Claire O'Donovan Satoshi Fukuchi Kanako O Koyanagi Roberto A Barrero Takuro Tamura Yumi Yamaguchi-Kabata Motohiko Tanino Kei Yura Satoru Miyazaki Kazuho Ikeo Keiichi Homma Arek Kasprzyk Tetsuo Nishikawa Mika Hirakawa Jean Thierry-Mieg Danielle Thierry-Mieg Jennifer Ashurst Libin Jia Mitsuteru Nakao Michael A Thomas Nicola Mulder Youla Karavidopoulou Lihua Jin Sangsoo Kim Tomohiro Yasuda Boris Lenhard Eric Eveno Yoshiyuki Suzuki Chisato Yamasaki Jun-ichi Takeda Craig Gough Phillip Hilton Yasuyuki Fujii Hiroaki Sakai Susumu Tanaka Clara Amid Matthew Bellgard Maria de Fatima Bonaldo Hidemasa Bono Susan K Bromberg Anthony J Brookes Elspeth Bruford Piero Carninci Claude Chelala Christine Couillault Sandro J de Souza Marie-Anne Debily Marie-Dominique Devignes Inna Dubchak Toshinori Endo Anne Estreicher Eduardo Eyras Kaoru Fukami-Kobayashi Gopal R Gopinath Esther Graudens Yoonsoo Hahn Michael Han Ze-Guang Han Kousuke Hanada Hideki Hanaoka Erimi Harada Katsuyuki Hashimoto Ursula Hinz Momoki Hirai Teruyoshi Hishiki Ian Hopkinson Sandrine Imbeaud Hidetoshi Inoko Alexander Kanapin Yayoi Kaneko Takeya Kasukawa Janet Kelso Paul Kersey Reiko Kikuno Kouichi Kimura Bernhard Korn Vladimir Kuryshev Izabela Makalowska Takashi Makino Shuhei Mano Regine Mariage-Samson Jun Mashima Hideo Matsuda Hans-Werner Mewes Shinsei Minoshima Keiichi Nagai Hideki Nagasaki Naoki Nagata Rajni Nigam Osamu Ogasawara Osamu Ohara Masafumi Ohtsubo Norihiro Okada Toshihisa Okido Satoshi Oota Motonori Ota Toshio Ota Tetsuji Otsuki Dominique Piatier-Tonneau Annemarie Poustka Shuang-Xi Ren Naruya Saitou Katsunaga Sakai Shigetaka Sakamoto Ryuichi Sakate Ingo Schupp Florence Servant Stephen Sherry Rie Shiba Nobuyoshi Shimizu Mary Shimoyama Andrew J Simpson Bento Soares Charles Steward Makiko Suwa Mami Suzuki Aiko Takahashi Gen Tamiya Hiroshi Tanaka Todd Taylor Joseph D Terwilliger Per Unneberg Vamsi Veeramachaneni Shinya Watanabe Laurens Wilming Norikazu Yasuda Hyang-Sook Yoo Marvin Stodolsky Wojciech Makalowski Mitiko Go Kenta Nakai Toshihisa Takagi Minoru Kanehisa Yoshiyuki Sakaki John Quackenbush Yasushi Okazaki Yoshihide Hayashizaki Winston Hide Ranajit Chakraborty Ken Nishikawa Hideaki Sugawara Yoshio Tateno Zhu Chen Michio Oishi Peter Tonellato Rolf Apweiler Kousaku Okubo Lukas Wagner Stefan Wiemann Robert L Strausberg Takao Isogai Charles Auffray Nobuo Nomura Takashi Gojobori Sumio Sugano

PLoS Biol 2004 Jun 20;2(6):e162. Epub 2004 Apr 20.

Integrated Database Group, Biological Information Research Center, National Institute of Advanced Industrial Science and Technology, Tokyo, Japan.

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http://dx.doi.org/10.1371/journal.pbio.0020162DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC393292PMC
June 2004

Oncogenomics and the development of new cancer therapies.

Nature 2004 May;429(6990):469-74

Department of Mammalian Genomics, The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 2085, USA.

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http://www.nature.com/articles/nature02627
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http://dx.doi.org/10.1038/nature02627DOI Listing
May 2004

The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags.

Authors:
Helena Brentani Otávia L Caballero Anamaria A Camargo Aline M da Silva Wilson Araújo da Silva Emmanuel Dias Neto Marco Grivet Arthur Gruber Pedro Edson Moreira Guimaraes Winston Hide Christian Iseli C Victor Jongeneel Janet Kelso Maria Aparecida Nagai Elida Paula Benquique Ojopi Elisson C Osorio Eduardo M R Reis Gregory J Riggins Andrew John George Simpson Sandro de Souza Brian J Stevenson Robert L Strausberg Eloiza H Tajara Sergio Verjovski-Almeida Marcio Luis Acencio Mário Henrique Bengtson Fabiana Bettoni Walter F Bodmer Marcelo R S Briones Luiz Paulo Camargo Webster Cavenee Janete M Cerutti Luis Eduardo Coelho Andrade Paulo César Costa dos Santos Maria Cristina Ramos Costa Israel Tojal da Silva Marcos Roberto H Estécio Karine Sa Ferreira Frank B Furnari Milton Faria Pedro A F Galante Gustavo S Guimaraes Adriano Jesus Holanda Edna Teruko Kimura Maarten R Leerkes Xin Lu Rui M B Maciel Elizabeth A L Martins Katlin Brauer Massirer Analy S A Melo Carlos Alberto Mestriner Elisabete Cristina Miracca Leandro Lorenco Miranda Francisco G Nobrega Paulo S Oliveira Apua C M Paquola José Rodrigo C Pandolfi Maria Ines de Moura Campos Pardini Fabio Passetti John Quackenbush Beatriz Schnabel Mari Cleide Sogayar Jorge E Souza Sandro R Valentini Andre C Zaiats Elisabete Jorge Amaral Liliane A T Arnaldi Amelia Goes de Araújo Simone Aparecida de Bessa David C Bicknell Maria Eugenia Ribeiro de Camaro Dirce Maria Carraro Helaine Carrer Alex F Carvalho Christian Colin Fernando Costa Cyntia Curcio Ismael Dale Cotrim Guerreiro da Silva Neusa Pereira da Silva Márcia Dellamano Hamza El-Dorry Enilza Maria Espreafico Ari José Scattone Ferreira Cristiane Ayres Ferreira Maria Angela H Z Fortes Angelita Habr Gama Daniel Giannella-Neto Maria Lúcia C C Giannella Ricardo R Giorgi Gustavo Henrique Goldman Maria Helena S Goldman Christine Hackel Paulo Lee Ho Elza Myiuki Kimura Luiz Paulo Kowalski Jose E Krieger Luciana C C Leite Ademar Lopes Ana Mercedes S C Luna Alan Mackay Suely Kazue Nagahashi Mari Adriana Aparecida Marques Waleska K Martins André Montagnini Mario Mourão Neto Ana Lucia T O Nascimento A Munro Neville Marina P Nobrega Mike J O'Hare Audrey Yumi Otsuka Anna Izabel Ruas de Melo Maria Luisa Paco-Larson Gonçalo Guimarães Pereira Neusa Pereira da Silva Joao Bosco Pesquero Juliana Gilbert Pessoa Paula Rahal Claudia Aparecida Rainho Vanderlei Rodrigues Silvia Regina Rogatto Camila Malta Romano Janaina Gusmao Romeiro Benedito Mauro Rossi Monica Rusticci Renata Guerra de Sá Simone Cristina Sant' Anna Miriam L Sarmazo Teresa Cristina de Lima E Silva Fernando Augusto Soares Maria de Fátima Sonati Josane de Freitas Sousa Diana Queiroz Valéria Valente André Luiz Vettore Fabiola Elizabeth Villanova Marco Antonio Zago Heloisa Zalcberg

Proc Natl Acad Sci U S A 2003 Nov 30;100(23):13418-23. Epub 2003 Oct 30.

Laboratorio de Genética Molecular do Cancer, Departmento de Radiologia, Universidade de São Paulo, Travessa da Rua Dr. Ovídeo Pires de Campos S/N, 4deg, Brazil.

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http://dx.doi.org/10.1073/pnas.1233632100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC263829PMC
November 2003

Comparison of medulloblastoma and normal neural transcriptomes identifies a restricted set of activated genes.

Oncogene 2003 Oct;22(48):7687-94

Department of Pathology, Duke University Medical Center, Box 3156, Durham NC 27710, USA.

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http://dx.doi.org/10.1038/sj.onc.1207043DOI Listing
October 2003

Sequence-based cancer genomics: progress, lessons and opportunities.

Nat Rev Genet 2003 Jun;4(6):409-18

National Cancer Institute, 31 Center Drive, Room 10A07, Bethesda, Maryland 20892, USA.

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http://dx.doi.org/10.1038/nrg1085DOI Listing
June 2003

Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing.

Proc Natl Acad Sci U S A 2003 Apr 1;100(8):4702-5. Epub 2003 Apr 1.

Office of Information Technology, Ludwig Institute for Cancer Research, and Swiss Institute of Bioinformatics, 1066 Epalinges, Switzerland.

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http://dx.doi.org/10.1073/pnas.0831040100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC153619PMC
April 2003

From knowing to controlling: a path from genomics to drugs using small molecule probes.

Science 2003 Apr;300(5617):294-5

Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Bethesda, MD 20892, USA.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1083395
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http://dx.doi.org/10.1126/science.1083395DOI Listing
April 2003

The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer.

Cancer Invest 2002 ;20(7-8):1038-50

National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1081/cnv-120005922DOI Listing
December 2002

Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative.

Dev Dyn 2002 Dec;225(4):384-91

Developmental Biology, Genetics and Teratology Branch, National Institute of Child Health and Human Development, Rockville, Maryland 20852, USA.

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http://dx.doi.org/10.1002/dvdy.10174DOI Listing
December 2002

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc Natl Acad Sci U S A 2002 Dec 11;99(26):16899-903. Epub 2002 Dec 11.

National Cancer Institute, Bethessda, MD 20892-2580, USA.

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http://dx.doi.org/10.1073/pnas.242603899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC139241PMC
December 2002

A preliminary transcriptome map of non-small cell lung cancer.

Cancer Res 2002 Jun;62(12):3340-6

Laboratory of Population Genetics, Center for Cancer Research, NIH, Bethesda, Maryland 20892, USA.

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June 2002

Large-scale transcriptional activity in chromosomes 21 and 22.

Science 2002 May;296(5569):916-9

Affymetrix, Santa Clara, CA 95051, USA., National Cancer Institute, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1126/science.1068597DOI Listing
May 2002

Cancer Molecular Analysis Project: weaving a rich cancer research tapestry.

Cancer Cell 2002 May;1(4):315-8

National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1016/s1535-6108(02)00065-xDOI Listing
May 2002