Publications Authored by Robert D Schnabel

Neuronal ceroid lipofuscinosis in a German Shorthaired Pointer associated with a previously reported nonsense variant.

Authors:

Juyuan Guo Gary S Johnson James Cook Olivia K Harris Tendai Mhlanga-Mutangadura Robert D Schnabel Cheryl A Jensen Martin L Katz

Mol Genet Metab Rep 2019 Dec 21;21:100521. Epub 2019 Oct 21.

Neurodegenerative Diseases Research Laboratory, Department of Ophthalmology, University of Missouri, Columbia, MO, USA.

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http://dx.doi.org/10.1016/j.ymgmr.2019.100521	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6819867	PMC

December 2019

Genome-wide association and genotype by environment interactions for growth traits in U.S. Gelbvieh cattle.

Authors:

Johanna L Smith Miranda L Wilson Sara M Nilson Troy N Rowan David L Oldeschulte Robert D Schnabel Jared E Decker Christopher M Seabury

BMC Genomics 2019 Dec 4;20(1):926. Epub 2019 Dec 4.

Department of Veterinary Pathobiology, Texas A&M University, College Station, 77843, USA.

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http://dx.doi.org/10.1186/s12864-019-6231-y	DOI Listing

December 2019

Identification of bovine CpG SNPs as potential targets for epigenetic regulation via DNA methylation.

Authors:

Mariângela B C Maldonado Nelson B de Rezende Neto Sheila T Nagamatsu Marcelo F Carazzolle Jesse L Hoff Lynsey K Whitacre Robert D Schnabel Susanta K Behura Stephanie D McKay Jeremy F Taylor Flavia L Lopes

PLoS One 2019 12;14(9):e0222329. Epub 2019 Sep 12.

São Paulo State University (Unesp), School of Veterinary Medicine, Araçatuba, São Paulo, Brazil.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0222329	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6742455	PMC

September 2019

CRUMBLER: A tool for the prediction of ancestry in cattle.

Authors:

Tamar E Crum Robert D Schnabel Jared E Decker Luciana C A Regitano Jeremy F Taylor

PLoS One 2019 26;14(8):e0221471. Epub 2019 Aug 26.

Division of Animal Sciences, University of Missouri, Columbia, Missouri, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0221471	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6709893	PMC

August 2019

QTL-mapping and genomic prediction for bovine respiratory disease in U.S. Holsteins using sequence imputation and feature selection.

Authors:

Jesse L Hoff Jared E Decker Robert D Schnabel Christopher M Seabury Holly L Neibergs Jeremy F Taylor

BMC Genomics 2019 Jul 5;20(1):555. Epub 2019 Jul 5.

Division of Animal Sciences, University of Missouri, Columbia, MO, 65211, USA.

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http://dx.doi.org/10.1186/s12864-019-5941-5	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6612181	PMC

July 2019

Genome-Wide SNP Discovery in Indigenous Cattle Breeds of South Africa.

Authors:

Avhashoni A Zwane Robert D Schnabel Jesse Hoff Ananyo Choudhury Mahlako Linah Makgahlela Azwihangwisi Maiwashe Este Van Marle-Koster Jeremy F Taylor

Front Genet 2019 29;10:273. Epub 2019 Mar 29.

Division of Animal Sciences, University of Missouri, Columbia, MO, United States.

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https://www.frontiersin.org/article/10.3389/fgene.2019.00273	Publisher Site
http://dx.doi.org/10.3389/fgene.2019.00273	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6452414	PMC

March 2019

Scans for signatures of selection in Russian cattle breed genomes reveal new candidate genes for environmental adaptation and acclimation.

Authors:

Andrey A Yurchenko Hans D Daetwyler Nikolay Yudin Robert D Schnabel Christy J Vander Jagt Vladimir Soloshenko Bulat Lhasaranov Ruslan Popov Jeremy F Taylor Denis M Larkin

Sci Rep 2018 08 28;8(1):12984. Epub 2018 Aug 28.

The Federal Research Center Institute of Cytology and Genetics, The Siberian Branch of the Russian Academy of Sciences (ICG SB RAS), 630090, Novosibirsk, Russia.

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http://dx.doi.org/10.1038/s41598-018-31304-w	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6113280	PMC

August 2018

Identification of genomic variants causing sperm abnormalities and reduced male fertility.

Authors:

Jeremy F Taylor Robert D Schnabel Peter Sutovsky

Anim Reprod Sci 2018 Jul 10;194:57-62. Epub 2018 Feb 10.

Division of Animal Sciences, University of Missouri, Columbia, MO, 65211, USA.

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http://dx.doi.org/10.1016/j.anireprosci.2018.02.007	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6503949	PMC

July 2018

Review: Genomics of bull fertility.

Authors:

Jeremy F Taylor Robert D Schnabel Peter Sutovsky

Animal 2018 Jun 5;12(s1):s172-s183. Epub 2018 Apr 5.

1Division of Animal Sciences,University of Missouri,Columbia,MO 65211,USA.

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http://dx.doi.org/10.1017/S1751731118000599	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6550321	PMC

June 2018

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals.

Authors:

Aniek C Bouwman Hans D Daetwyler Amanda J Chamberlain Carla Hurtado Ponce Mehdi Sargolzaei Flavio S Schenkel Goutam Sahana Armelle Govignon-Gion Simon Boitard Marlies Dolezal Hubert Pausch Rasmus F Brøndum Phil J Bowman Bo Thomsen Bernt Guldbrandtsen Mogens S Lund Bertrand Servin Dorian J Garrick James Reecy Johanna Vilkki Alessandro Bagnato Min Wang Jesse L Hoff Robert D Schnabel Jeremy F Taylor Anna A E Vinkhuyzen Frank Panitz Christian Bendixen Lars-Erik Holm Birgit Gredler Chris Hozé Mekki Boussaha Marie-Pierre Sanchez Dominique Rocha Aurelien Capitan Thierry Tribout Anne Barbat Pascal Croiseau Cord Drögemüller Vidhya Jagannathan Christy Vander Jagt John J Crowley Anna Bieber Deirdre C Purfield Donagh P Berry Reiner Emmerling Kay-Uwe Götz Mirjam Frischknecht Ingolf Russ Johann Sölkner Curtis P Van Tassell Ruedi Fries Paul Stothard Roel F Veerkamp Didier Boichard Mike E Goddard Ben J Hayes

Nat Genet 2018 03 19;50(3):362-367. Epub 2018 Feb 19.

AgriBio, Centre for AgriBioscience, Department of Economic Development, Jobs, Transport and Resources, Bundoora, Victoria, Australia.

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http://dx.doi.org/10.1038/s41588-018-0056-5	DOI Listing

March 2018

Tissue Tropism in Host Transcriptional Response to Members of the Bovine Respiratory Disease Complex.

Authors:

Susanta K Behura Polyana C Tizioto JaeWoo Kim Natalia V Grupioni Christopher M Seabury Robert D Schnabel Laurel J Gershwin Alison L Van Eenennaam Rachel Toaff-Rosenstein Holly L Neibergs Luciana C A Regitano Jeremy F Taylor

Sci Rep 2017 12 20;7(1):17938. Epub 2017 Dec 20.

Division of Animal Sciences, University of Missouri, Columbia, MO, United States of America.

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http://dx.doi.org/10.1038/s41598-017-18205-0	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738336	PMC

December 2017

Candidate lethal haplotypes and causal mutations in Angus cattle.

Authors:

Jesse L Hoff Jared E Decker Robert D Schnabel Jeremy F Taylor

BMC Genomics 2017 Oct 18;18(1):799. Epub 2017 Oct 18.

Division of Animal Sciences, University of Missouri, Columbia, MO, 65211, USA.

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http://dx.doi.org/10.1186/s12864-017-4196-2	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5648474	PMC

October 2017

Association of single nucleotide polymorphisms in candidate genes previously related to genetic variation in fertility with phenotypic measurements of reproductive function in Holstein cows.

Authors:

M Sofia Ortega Anna C Denicol John B Cole Daniel J Null Jeremy F Taylor Robert D Schnabel Peter J Hansen

J Dairy Sci 2017 May 2;100(5):3725-3734. Epub 2017 Mar 2.

Department of Animal Sciences, D.H. Barron Reproductive and Perinatal Biology Research Program and Genetics Institute, University of Florida, Gainesville 32611. Electronic address:

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http://dx.doi.org/10.3168/jds.2016-12260	DOI Listing

May 2017

Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle.

BMC Genomics 2017 05 18;18(1):386. Epub 2017 May 18.

Division of Animal Sciences, University of Missouri, Columbia, 65211, USA.

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http://dx.doi.org/10.1186/s12864-017-3754-y	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5437562	PMC

May 2017

Corrigendum: Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Authors:

Polyana C Tizioto Luiz L Coutinho Priscila S N Oliveira Aline S M Cesar Wellison J S Diniz Andressa O Lima Marina I Rocha Jared E Decker Robert D Schnabel Gerson B Mourão Rymer R Tullio Adhemar Zerlotini Jeremy F Taylor Luciana C A Regitano

Sci Rep 2017 04 5;7:44345. Epub 2017 Apr 5.

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http://dx.doi.org/10.1038/srep44345	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5380936	PMC

April 2017

A homozygous PIGN missense mutation in Soft-Coated Wheaten Terriers with a canine paroxysmal dyskinesia.

Authors:

Ana L Kolicheski Gary S Johnson Tendai Mhlanga-Mutangadura Jeremy F Taylor Robert D Schnabel Taroh Kinoshita Yoshiko Murakami Dennis P O'Brien

Neurogenetics 2017 01 28;18(1):39-47. Epub 2016 Nov 28.

Department of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO, 65211, USA.

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http://link.springer.com/10.1007/s10048-016-0502-4	Publisher Site
http://dx.doi.org/10.1007/s10048-016-0502-4	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5243907	PMC

January 2017

Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis.

Authors:

Lynsey K Whitacre Jesse L Hoff Robert D Schnabel Sara Albarella Francesca Ciotola Vincenzo Peretti Francesco Strozzi Chiara Ferrandi Luigi Ramunno Tad S Sonstegard John L Williams Jeremy F Taylor Jared E Decker

Sci Rep 2017 01 3;7:39719. Epub 2017 Jan 3.

Informatics Institute, University of Missouri, Columbia, Missouri, USA.

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http://dx.doi.org/10.1038/srep39719	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5206621	PMC

January 2017

Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake.

Authors:

Polyana C Tizioto Luiz L Coutinho Priscila S N Oliveira Aline S M Cesar Wellison J S Diniz Andressa O Lima Marina I Rocha Jared E Decker Robert D Schnabel Gerson B Mourão Rymer R Tullio Adhemar Zerlotini Jeremy F Taylor Luciana C A Regitano

Sci Rep 2016 12 22;6:39493. Epub 2016 Dec 22.

Embrapa Pecuária Sudeste, São Carlos, SP, Brazil.

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http://dx.doi.org/10.1038/srep39493	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5177880	PMC

December 2016

Early cave art and ancient DNA record the origin of European bison.

Nat Commun 2016 10 18;7:13158. Epub 2016 Oct 18.

Australian Centre for Ancient DNA, School of Biological Sciences, University of Adelaide, Adelaide, South Australia 5005, Australia.

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http://dx.doi.org/10.1038/ncomms13158	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5071849	PMC

October 2016

Lessons for livestock genomics from genome and transcriptome sequencing in cattle and other mammals.

Authors:

Jeremy F Taylor Lynsey K Whitacre Jesse L Hoff Polyana C Tizioto JaeWoo Kim Jared E Decker Robert D Schnabel

Genet Sel Evol 2016 08 17;48(1):59. Epub 2016 Aug 17.

Division of Animal Sciences, University of Missouri, Columbia, MO, USA.

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http://dx.doi.org/10.1186/s12711-016-0237-6	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4989351	PMC

August 2016

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Authors:

Derek M Bickhart Lingyang Xu Jana L Hutchison John B Cole Daniel J Null Steven G Schroeder Jiuzhou Song Jose Fernando Garcia Tad S Sonstegard Curtis P Van Tassell Robert D Schnabel Jeremy F Taylor Harris A Lewin George E Liu

DNA Res 2016 Jun 15;23(3):253-62. Epub 2016 Apr 15.

USDA-ARS, Animal Genomics and Improvement Laboratory, Beltsville, MD 20705, USA

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http://dx.doi.org/10.1093/dnares/dsw013	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909312	PMC

June 2016

Genome-Wide Scan for Visceral Leishmaniasis in Mixed-Breed Dogs Identifies Candidate Genes Involved in T Helper Cells and Macrophage Signaling.

Authors:

Yuri T Utsunomiya Érica S Ribeiro Amanda P N Quintal Juliano R Sangalli Valquiria R Gazola Henrique B Paula Cristiana M Trinconi Valéria M F Lima Silvia H V Perri Jeremy F Taylor Robert D Schnabel Tad S Sonstegard José F Garcia Cáris M Nunes

PLoS One 2015 8;10(9):e0136749. Epub 2015 Sep 8.

Departamento de Apoio, Saúde e Produção Animal, Faculdade de Medicina Veterinária de Araçatuba, UNESP-Univ Estadual Paulista, Araçatuba, São Paulo, Brazil.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136749	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4562658	PMC

May 2016

Immunological Response to Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex: An RNA-Sequence Analysis of the Bronchial Lymph Node Transcriptome.

Authors:

Polyana C Tizioto JaeWoo Kim Christopher M Seabury Robert D Schnabel Laurel J Gershwin Alison L Van Eenennaam Rachel Toaff-Rosenstein Holly L Neibergs Jeremy F Taylor

PLoS One 2015 29;10(6):e0131459. Epub 2015 Jun 29.

Division of Animal Sciences, University of Missouri, Columbia, Missouri, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131459	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4484807	PMC

March 2016

A mutation in the Warburg syndrome gene, RAB3GAP1, causes a similar syndrome with polyneuropathy and neuronal vacuolation in Black Russian Terrier dogs.

Authors:

Tendai Mhlanga-Mutangadura Gary S Johnson Robert D Schnabel Jeremy F Taylor Gayle C Johnson Martin L Katz G Diane Shelton Teresa E Lever Elizabeth Giuliano Nicolas Granger Jeremy Shomper Dennis P O'Brien

Neurobiol Dis 2016 Feb 25;86:75-85. Epub 2015 Nov 25.

Department of Veterinary Medicine & Surgery, University of Missouri, Columbia, USA. Electronic address:

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http://dx.doi.org/10.1016/j.nbd.2015.11.016	DOI Listing

February 2016

Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs.

Authors:

Clare D Marsden Diego Ortega-Del Vecchyo Dennis P O'Brien Jeremy F Taylor Oscar Ramirez Carles Vilà Tomas Marques-Bonet Robert D Schnabel Robert K Wayne Kirk E Lohmueller

Proc Natl Acad Sci U S A 2016 01 22;113(1):152-7. Epub 2015 Dec 22.

Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA 90095; Interdepartmental Program in Bioinformatics, University of California, Los Angeles, CA 90095; Department of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA 90095

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http://dx.doi.org/10.1073/pnas.1512501113	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711855	PMC

January 2016

What's in your next-generation sequence data? An exploration of unmapped DNA and RNA sequence reads from the bovine reference individual.

Authors:

Lynsey K Whitacre Polyana C Tizioto JaeWoo Kim Tad S Sonstegard Steven G Schroeder Leeson J Alexander Juan F Medrano Robert D Schnabel Jeremy F Taylor Jared E Decker

BMC Genomics 2015 Dec 29;16:1114. Epub 2015 Dec 29.

Informatics Institute, University of Missouri, Columbia, MO, 65211, USA.

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http://dx.doi.org/10.1186/s12864-015-2313-7	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4696311	PMC

December 2015

The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity.

Authors:

Tasia M Taxis Sara Wolff Sarah J Gregg Nicholas O Minton Chiqian Zhang Jingjing Dai Robert D Schnabel Jeremy F Taylor Monty S Kerley J Chris Pires William R Lamberson Gavin C Conant

Nucleic Acids Res 2015 Nov 29;43(20):9600-12. Epub 2015 Sep 29.

Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA Informatics Institute, University of Missouri, Columbia, MO 65211, USA

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https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/	Publisher Site
http://dx.doi.org/10.1093/nar/gkv973	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4787786	PMC

November 2015

A simple procedure for directly obtaining haplotype sequences of diploid genomes.

Authors:

Harry A Noyes Derek Daly Ian Goodhead Suzanne Kay Steven J Kemp John Kenny Ilik Saccheri Robert D Schnabel Jeremy F Taylor Neil Hall

BMC Genomics 2015 Aug 28;16:642. Epub 2015 Aug 28.

Centre for Genome Research, Institute of Integrative Biology, University of Liverpool, Crown St., Liverpool, L69 7ZB, UK.

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http://dx.doi.org/10.1186/s12864-015-1818-4	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551521	PMC

August 2015

RAPTR-SV: a hybrid method for the detection of structural variants.

Authors:

Derek M Bickhart Jana L Hutchison Lingyang Xu Robert D Schnabel Jeremy F Taylor James M Reecy Steven Schroeder Curt P Van Tassell Tad S Sonstegard George E Liu

Bioinformatics 2015 Jul 16;31(13):2084-90. Epub 2015 Feb 16.

Animal Genomics and Improvement Laboratory, ARS, USDA, Beltsville, MD 20705, USA, Department of Animal and Avian Sciences, University of Maryland, College Park, MD 20705, USA, Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA and Department of Animal Science, Iowa State University, Ames, IA 50011, USA.

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https://academic.oup.com/bioinformatics/article-lookup/doi/1	Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btv086	DOI Listing

July 2015

Comparison of Bayesian models to estimate direct genomic values in multi-breed commercial beef cattle.

Authors:

Megan M Rolf Dorian J Garrick Tara Fountain Holly R Ramey Robert L Weaber Jared E Decker E John Pollak Robert D Schnabel Jeremy F Taylor

Genet Sel Evol 2015 Apr 1;47:23. Epub 2015 Apr 1.

Division of Animal Sciences, University of Missouri, Columbia, MO, 65211, USA.

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http://www.gsejournal.org/content/47/1/23	Publisher Site
http://dx.doi.org/10.1186/s12711-015-0106-8	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433095	PMC

April 2015

Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle.

Authors:

Polyana C Tizioto Jeremy F Taylor Jared E Decker Caio F Gromboni Mauricio A Mudadu Robert D Schnabel Luiz L Coutinho Gerson B Mourão Priscila S N Oliveira Marcela M Souza James M Reecy Renata T Nassu Flavia A Bressani Patricia Tholon Tad S Sonstegard Mauricio M Alencar Rymer R Tullio Ana R A Nogueira Luciana C A Regitano

Genet Sel Evol 2015 Mar 11;47:15. Epub 2015 Mar 11.

Embrapa Southeast Livestock, São Carlos, SP, Brazil.

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http://dx.doi.org/10.1186/s12711-014-0083-3	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4355494	PMC

March 2015

Global liver gene expression differences in Nelore steers with divergent residual feed intake phenotypes.

Authors:

Polyana C Tizioto Luiz L Coutinho Jared E Decker Robert D Schnabel Kamila O Rosa Priscila S N Oliveira Marcela M Souza Gerson B Mourão Rymer R Tullio Amália S Chaves Dante P D Lanna Adhemar Zerlotini-Neto Mauricio A Mudadu Jeremy F Taylor Luciana C A Regitano

BMC Genomics 2015 Mar 25;16:242. Epub 2015 Mar 25.

Embrapa Southeast Livestock, São Carlos, SP, Brazil.

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http://dx.doi.org/10.1186/s12864-015-1464-x	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381482	PMC

March 2015

A rare homozygous MFSD8 single-base-pair deletion and frameshift in the whole genome sequence of a Chinese Crested dog with neuronal ceroid lipofuscinosis.

Authors:

Juyuan Guo Dennis P O'Brien Tendai Mhlanga-Mutangadura Natasha J Olby Jeremy F Taylor Robert D Schnabel Martin L Katz Gary S Johnson

BMC Vet Res 2015 Jan 3;10:960. Epub 2015 Jan 3.

Department of Veterinary Pathobiology, College of Veterinary Medicine, University of Missouri, Columbia, MO, USA.

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http://dx.doi.org/10.1186/s12917-014-0181-z	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4298050	PMC

January 2015

Results of the BRD CAP project: progress toward identifying genetic markers associated with BRD susceptibility.

Authors:

Alison Van Eenennaam Holly Neibergs Christopher Seabury Jeremy Taylor Zeping Wang Erik Scraggs Robert D Schnabel Jared Decker Andrzej Wojtowicz Sharif Aly Jessica Davis Patricia Blanchard Beate Crossley Paul Rossitto Terry Lehenbauer Robert Hagevoort Erik Chavez J Shannon Neibergs James E Womack

Anim Health Res Rev 2014 Dec 11;15(2):157-60. Epub 2014 Nov 11.

Department of Molecular and Cellular Medicine,Texas A&M Health Science Center College of Medicine, Texas A&M University,Bryan,Texas,USA.

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http://dx.doi.org/10.1017/S1466252314000231	DOI Listing

December 2014

Genome-wide DNA methylation analysis in precursor B-cells.

Authors:

Md Almamun Benjamin T Levinson Susan T Gater Robert D Schnabel Gerald L Arthur J Wade Davis Kristen H Taylor

Epigenetics 2014 Dec;9(12):1588-95

a Department of Pathology and Anatomical Sciences ; University of Missouri-Columbia ; Columbia , MO USA.

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http://dx.doi.org/10.4161/15592294.2014.983379	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4622941	PMC

December 2014

QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies.

BMC Genomics 2014 Nov 20;15:1004. Epub 2014 Nov 20.

Department of Animal Science, Iowa State University, Ames 50011, USA.

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http://dx.doi.org/10.1186/1471-2164-15-1004	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253998	PMC

November 2014

A CLN8 nonsense mutation in the whole genome sequence of a mixed breed dog with neuronal ceroid lipofuscinosis and Australian Shepherd ancestry.

Authors:

Juyuan Guo Gary S Johnson Holly A Brown Michele L Provencher Ronaldo C da Costa Tendai Mhlanga-Mutangadura Jeremy F Taylor Robert D Schnabel Dennis P O'Brien Martin L Katz

Mol Genet Metab 2014 Aug 4;112(4):302-9. Epub 2014 Jun 4.

Mason Eye Institute, University of Missouri School of Medicine, Columbia, MO, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ymgme.2014.05.014	DOI Listing

August 2014

Large-effect pleiotropic or closely linked QTL segregate within and across ten US cattle breeds.

Authors:

Mahdi Saatchi Robert D Schnabel Jeremy F Taylor Dorian J Garrick

BMC Genomics 2014 Jun 6;15:442. Epub 2014 Jun 6.

Department of Animal Science, Iowa State University, Ames 50011, USA.

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http://dx.doi.org/10.1186/1471-2164-15-442	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4102727	PMC

June 2014

Recombination locations and rates in beef cattle assessed from parent-offspring pairs.

Authors:

Zi-Qing Weng Mahdi Saatchi Robert D Schnabel Jeremy F Taylor Dorian J Garrick

Genet Sel Evol 2014 May 29;46:34. Epub 2014 May 29.

Department of Animal Science, Iowa State University, Ames, IA 50010, USA.

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http://dx.doi.org/10.1186/1297-9686-46-34	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071795	PMC

May 2014

Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.

PLoS Genet 2014 Mar 27;10(3):e1004254. Epub 2014 Mar 27.

Division of Animal Sciences, University of Missouri, Columbia, Missouri, United States of America.

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http://dx.doi.org/10.1371/journal.pgen.1004254	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967955	PMC

March 2014

Predicting expected progeny difference for marbling score in Angus cattle using artificial neural networks and Bayesian regression models.

Authors:

Hayrettin Okut Xiao-Liao Wu Guilherme J M Rosa Stewart Bauck Brent W Woodward Robert D Schnabel Jeremy F Taylor Daniel Gianola

Genet Sel Evol 2013 Sep 11;45:34. Epub 2013 Sep 11.

Department of Animal Sciences, University of Wisconsin, Madison, WI 53706, USA.

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http://dx.doi.org/10.1186/1297-9686-45-34	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3851253	PMC

September 2013

Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.

Front Genet 2013 18;4:176. Epub 2013 Sep 18.

Bovine Functional Genomics Laboratory, BARC, Agriculture Research Service, United States Department of Agriculture Beltsville, MD, USA.

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http://dx.doi.org/10.3389/fgene.2013.00176	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3776237	PMC

September 2013

Comparison of molecular breeding values based on within- and across-breed training in beef cattle.

Authors:

Stephen D Kachman Matthew L Spangler Gary L Bennett Kathryn J Hanford Larry A Kuehn Warren M Snelling R Mark Thallman Mahdi Saatchi Dorian J Garrick Robert D Schnabel Jeremy F Taylor E John Pollak

Genet Sel Evol 2013 Aug 16;45:30. Epub 2013 Aug 16.

Department of Statistics, University of Nebraska, Lincoln, NE 68583, USA.

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http://dx.doi.org/10.1186/1297-9686-45-30	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3765540	PMC

August 2013

Detection of selective sweeps in cattle using genome-wide SNP data.

Authors:

Holly R Ramey Jared E Decker Stephanie D McKay Megan M Rolf Robert D Schnabel Jeremy F Taylor

BMC Genomics 2013 Jun 7;14:382. Epub 2013 Jun 7.

Division of Animal Sciences, University of Missouri, Columbia, MO 65211, USA.

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http://dx.doi.org/10.1186/1471-2164-14-382	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3681554	PMC

June 2013

Characterization of the rat developmental liver transcriptome.

Authors:

Richard H Chapple Polyana C Tizioto Kevin D Wells Scott A Givan JaeWoo Kim Stephanie D McKay Robert D Schnabel Jeremy F Taylor

Physiol Genomics 2013 Apr 19;45(8):301-11. Epub 2013 Feb 19.

Division of Animal Sciences, University of Missouri-Columbia, Columbia, MO 65211, USA.

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http://www.physiology.org/doi/10.1152/physiolgenomics.00128.	Publisher Site
http://dx.doi.org/10.1152/physiolgenomics.00128.2012	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633428	PMC

April 2013

New World cattle show ancestry from multiple independent domestication events.

Authors:

Emily Jane McTavish Jared E Decker Robert D Schnabel Jeremy F Taylor David M Hillis

Proc Natl Acad Sci U S A 2013 Apr 25;110(15):E1398-406. Epub 2013 Mar 25.

Department of Integrative Biology, University of Texas at Austin, Austin, TX 78712, USA.

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http://dx.doi.org/10.1073/pnas.1303367110	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3625352	PMC

April 2013

Accuracy of direct genomic breeding values for nationally evaluated traits in US Limousin and Simmental beef cattle.

Authors:

Mahdi Saatchi Robert D Schnabel Megan M Rolf Jeremy F Taylor Dorian J Garrick

Genet Sel Evol 2012 Dec 7;44:38. Epub 2012 Dec 7.

Department of Animal Science, Iowa State University, Ames, IA 50011, USA.

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http://www.gsejournal.org/content/44/1/38	Publisher Site
http://dx.doi.org/10.1186/1297-9686-44-38	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3536607	PMC

December 2012

A novel analytical method, Birth Date Selection Mapping, detects response of the Angus (Bos taurus) genome to selection on complex traits.

Authors:

Jared E Decker Daniel A Vasco Stephanie D McKay Matthew C McClure Megan M Rolf JaeWoo Kim Sally L Northcutt Stewart Bauck Brent W Woodward Robert D Schnabel Jeremy F Taylor

BMC Genomics 2012 Nov 9;13:606. Epub 2012 Nov 9.

Division of Animal Sciences, University of Missouri, Columbia, 65211, USA.

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http://dx.doi.org/10.1186/1471-2164-13-606	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3532096	PMC

November 2012

Depot-specific gene expression profiles during differentiation and transdifferentiation of bovine muscle satellite cells, and differentiation of preadipocytes.

Authors:

Eun Ju Lee Hyung Jeong Lee Majid Rasool Kamli Smritee Pokharel Abdul R Bhat Yong-Ho Lee Bong-Hwan Choi Taehoon Chun Se Won Kang Yong Seok Lee Jae Woo Kim Robert D Schnabel Jeremy F Taylor Inho Choi

Genomics 2012 Sep 21;100(3):195-202. Epub 2012 Jun 21.

School of Biotechnology, Yeungnam University, Gyeongsan, Republic of Korea.

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http://dx.doi.org/10.1016/j.ygeno.2012.06.005	DOI Listing

September 2012

An ensemble-based approach to imputation of moderate-density genotypes for genomic selection with application to Angus cattle.

Authors:

Chuanyu Sun Xiao-Lin Wu Kent A Weigel Guilherme J M Rosa Stewart Bauck Brent W Woodward Robert D Schnabel Jeremy F Taylor Daniel Gianola

Genet Res (Camb) 2012 Jun 18;94(3):133-50. Epub 2012 Jul 18.

Department of Dairy Science, University of Wisconsin, Madison, WI 53706, USA.

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http://www.journals.cambridge.org/abstract_S001667231200033X	Publisher Site
http://dx.doi.org/10.1017/S001667231200033X	DOI Listing

June 2012

Evolution of the bovine TLR gene family and member associations with Mycobacterium avium subspecies paratuberculosis infection.

Authors:

Colleen A Fisher Eric K Bhattarai Jason B Osterstock Scot E Dowd Paul M Seabury Meenu Vikram Robert H Whitlock Ynte H Schukken Robert D Schnabel Jeremy F Taylor James E Womack Christopher M Seabury

PLoS One 2011 30;6(11):e27744. Epub 2011 Nov 30.

Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0027744	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3227585	PMC

May 2012

Copy number variation of individual cattle genomes using next-generation sequencing.

Authors:

Derek M Bickhart Yali Hou Steven G Schroeder Can Alkan Maria Francesca Cardone Lakshmi K Matukumalli Jiuzhou Song Robert D Schnabel Mario Ventura Jeremy F Taylor Jose Fernando Garcia Curtis P Van Tassell Tad S Sonstegard Evan E Eichler George E Liu

Genome Res 2012 Apr 2;22(4):778-90. Epub 2012 Feb 2.

USDA-ARS, ANRI, Bovine Functional Genomics Laboratory, Beltsville, Maryland 20705, USA.

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http://dx.doi.org/10.1101/gr.133967.111	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3317159	PMC

April 2012

Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation.

Authors:

Mahdi Saatchi Mathew C McClure Stephanie D McKay Megan M Rolf JaeWoo Kim Jared E Decker Tasia M Taxis Richard H Chapple Holly R Ramey Sally L Northcutt Stewart Bauck Brent Woodward Jack C M Dekkers Rohan L Fernando Robert D Schnabel Dorian J Garrick Jeremy F Taylor

Genet Sel Evol 2011 Nov 28;43:40. Epub 2011 Nov 28.

Department of Animal Science, Iowa State University, Ames, IA 50011, USA.

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http://dx.doi.org/10.1186/1297-9686-43-40	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3250932	PMC

November 2011

A truncating mutation in ATP13A2 is responsible for adult-onset neuronal ceroid lipofuscinosis in Tibetan terriers.

Authors:

Fabiana H G Farias Rong Zeng Gary S Johnson Fred A Wininger Jeremy F Taylor Robert D Schnabel Stephanie D McKay Douglas N Sanders Hannes Lohi Eija H Seppälä Claire M Wade Kerstin Lindblad-Toh Dennis P O'Brien Martin L Katz

Neurobiol Dis 2011 Jun 26;42(3):468-74. Epub 2011 Feb 26.

Department of Veterinary Pathobiology, University of Missouri, Columbia, USA.

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http://dx.doi.org/10.1016/j.nbd.2011.02.009	DOI Listing

June 2011

Evaluation of approaches for identifying population informative markers from high density SNP chips.

Authors:

Samantha Wilkinson Pamela Wiener Alan L Archibald Andy Law Robert D Schnabel Stephanie D McKay Jeremy F Taylor Rob Ogden

BMC Genet 2011 May 13;12:45. Epub 2011 May 13.

The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, Scotland, UK.

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http://dx.doi.org/10.1186/1471-2156-12-45	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118130	PMC

May 2011

Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation.

Authors:

John R Garbe Christine G Elsik Eric Antoniou James M Reecy Karl J Clark Anand Venkatraman Jae-Woo Kim Robert D Schnabel C Michael Dickens Russell D Wolfinger Scott C Fahrenkrug Jeremy F Taylor

J Biomed Biotechnol 2010 14;2010:453638. Epub 2010 Dec 14.

Department of Animal Science, University of Minnesota, St Paul, MN 55108, USA.

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http://dx.doi.org/10.1155/2010/453638	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3010673	PMC

April 2011

An ADAMTS17 splice donor site mutation in dogs with primary lens luxation.

Invest Ophthalmol Vis Sci 2010 Sep 7;51(9):4716-21. Epub 2010 Apr 7.

Department of Veterinary Pathobiology, Mason Eye Institute, Universoty of Missouri, Columbia, MO 65211, USA.

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http://iovs.arvojournals.org/article.aspx?doi=10.1167/iovs.0	Publisher Site
http://dx.doi.org/10.1167/iovs.09-5142	DOI Listing

September 2010

Genetic variation at a metallothionein 2A promoter single-nucleotide polymorphism in white and black females in Midwestern United States.

Authors:

Jane A McElroy Elizabeth C Bryda Stephanie D McKay Robert D Schnabel Jeremy F Taylor

J Toxicol Environ Health A 2010 ;73(19):1283-7

Family and Community Medicine Department, University of Missouri, Columbia, Missouri 65212, USA.

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http://dx.doi.org/10.1080/15287394.2010.485067	DOI Listing

September 2010

Characterization of DGAT1 allelic effects in a sample of North American Holstein cattle.

Authors:

Marcos Vinicius G Barbosa da Silva Tad S Sonstegard Richard M Thallman Erin E Connor Robert D Schnabel Curt P Van Tassell

Anim Biotechnol 2010 Apr;21(2):88-99

Bovine Functional Genomics Laboratory, Agricultural Research Service, USDA, Beltsville, Maryland, USA.

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http://www.tandfonline.com/doi/abs/10.1080/10495390903504625	Publisher Site
http://dx.doi.org/10.1080/10495390903504625	DOI Listing

April 2010

Impact of reduced marker set estimation of genomic relationship matrices on genomic selection for feed efficiency in Angus cattle.

Authors:

Megan M Rolf Jeremy F Taylor Robert D Schnabel Stephanie D McKay Matthew C McClure Sally L Northcutt Monty S Kerley Robert L Weaber

BMC Genet 2010 Apr 19;11:24. Epub 2010 Apr 19.

Division of Animal Sciences, University of Missouri, Columbia, MO 65211-5300, USA.

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http://bmcgenet.biomedcentral.com/articles/10.1186/1471-2156	Publisher Site
http://dx.doi.org/10.1186/1471-2156-11-24	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2868785	PMC

April 2010

Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle.

Authors:

Christopher M Seabury Paul M Seabury Jared E Decker Robert D Schnabel Jeremy F Taylor James E Womack

Proc Natl Acad Sci U S A 2010 Jan 14;107(1):151-6. Epub 2009 Dec 14.

Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843-4467, USA.

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http://dx.doi.org/10.1073/pnas.0913006107	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2806759	PMC

January 2010

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.

Proc Natl Acad Sci U S A 2009 Nov 21;106(44):18644-9. Epub 2009 Oct 21.

Divisions of Animal Sciences, Biological Sciences, and Department of Veterinary Pathobiology, University of Missouri, Columbia, MO 65211, USA.

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http://dx.doi.org/10.1073/pnas.0904691106	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2765454	PMC

November 2009

Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology.

PLoS One 2009 Aug 5;4(8):e6524. Epub 2009 Aug 5.

Wageningen University, Animal Breeding and Genomics Centre, Wageningen, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0006524	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2716536	PMC

August 2009

Development and characterization of a high density SNP genotyping assay for cattle.

Authors:

Lakshmi K Matukumalli Cynthia T Lawley Robert D Schnabel Jeremy F Taylor Mark F Allan Michael P Heaton Jeff O'Connell Stephen S Moore Timothy P L Smith Tad S Sonstegard Curtis P Van Tassell

PLoS One 2009 24;4(4):e5350. Epub 2009 Apr 24.

Department of Bioinformatics and Computational Biology, George Mason University, Manassas, Virginia, United States of America.

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http://dx.plos.org/10.1371/journal.pone.0005350	Publisher Site
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0005350	PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2669730	PMC

July 2009

Assessment of DNA extracted from FTA cards for use on the Illumina iSelect BeadChip.

Authors:

Matthew C McClure Stephanie D McKay Robert D Schnabel Jeremy F Taylor

BMC Res Notes 2009 Jun 16;2:107. Epub 2009 Jun 16.

Division of Animal Sciences, University of Missouri-Columbia, Columbia, MO, USA.

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http://dx.doi.org/10.1186/1756-0500-2-107	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2704227	PMC

June 2009

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Authors:

Christine G Elsik Ross L Tellam Kim C Worley Richard A Gibbs Donna M Muzny George M Weinstock David L Adelson Evan E Eichler Laura Elnitski Roderic Guigó Debora L Hamernik Steve M Kappes Harris A Lewin David J Lynn Frank W Nicholas Alexandre Reymond Monique Rijnkels Loren C Skow Evgeny M Zdobnov Lawrence Schook James Womack Tyler Alioto Stylianos E Antonarakis Alex Astashyn Charles E Chapple Hsiu-Chuan Chen Jacqueline Chrast Francisco Câmara Olga Ermolaeva Charlotte N Henrichsen Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Felix Kokocinski Melissa Landrum Donna Maglott Kim Pruitt Victor Sapojnikov Stephen M Searle Victor Solovyev Alexandre Souvorov Catherine Ucla Carine Wyss Juan M Anzola Daniel Gerlach Eran Elhaik Dan Graur Justin T Reese Robert C Edgar John C McEwan Gemma M Payne Joy M Raison Thomas Junier Evgenia V Kriventseva Eduardo Eyras Mireya Plass Ravikiran Donthu Denis M Larkin James Reecy Mary Q Yang Lin Chen Ze Cheng Carol G Chitko-McKown George E Liu Lakshmi K Matukumalli Jiuzhou Song Bin Zhu Daniel G Bradley Fiona S L Brinkman Lilian P L Lau Matthew D Whiteside Angela Walker Thomas T Wheeler Theresa Casey J Bruce German Danielle G Lemay Nauman J Maqbool Adrian J Molenaar Seongwon Seo Paul Stothard Cynthia L Baldwin Rebecca Baxter Candice L Brinkmeyer-Langford Wendy C Brown Christopher P Childers Timothy Connelley Shirley A Ellis Krista Fritz Elizabeth J Glass Carolyn T A Herzig Antti Iivanainen Kevin K Lahmers Anna K Bennett C Michael Dickens James G R Gilbert Darren E Hagen Hanni Salih Jan Aerts Alexandre R Caetano Brian Dalrymple Jose Fernando Garcia Clare A Gill Stefan G Hiendleder Erdogan Memili Diane Spurlock John L Williams Lee Alexander Michael J Brownstein Leluo Guan Robert A Holt Steven J M Jones Marco A Marra Richard Moore Stephen S Moore Andy Roberts Masaaki Taniguchi Richard C Waterman Joseph Chacko Mimi M Chandrabose Andy Cree Marvin Diep Dao Huyen H Dinh Ramatu Ayiesha Gabisi Sandra Hines Jennifer Hume Shalini N Jhangiani Vandita Joshi Christie L Kovar Lora R Lewis Yih-Shin Liu John Lopez Margaret B Morgan Ngoc Bich Nguyen Geoffrey O Okwuonu San Juana Ruiz Jireh Santibanez Rita A Wright Christian Buhay Yan Ding Shannon Dugan-Rocha Judith Herdandez Michael Holder Aniko Sabo Amy Egan Jason Goodell Katarzyna Wilczek-Boney Gerald R Fowler Matthew Edward Hitchens Ryan J Lozado Charles Moen David Steffen James T Warren Jingkun Zhang Readman Chiu Jacqueline E Schein K James Durbin Paul Havlak Huaiyang Jiang Yue Liu Xiang Qin Yanru Ren Yufeng Shen Henry Song Stephanie Nicole Bell Clay Davis Angela Jolivet Johnson Sandra Lee Lynne V Nazareth Bella Mayurkumar Patel Ling-Ling Pu Selina Vattathil Rex Lee Williams Stacey Curry Cerissa Hamilton Erica Sodergren David A Wheeler Wes Barris Gary L Bennett André Eggen Ronnie D Green Gregory P Harhay Matthew Hobbs Oliver Jann John W Keele Matthew P Kent Sigbjørn Lien Stephanie D McKay Sean McWilliam Abhirami Ratnakumar Robert D Schnabel Timothy Smith Warren M Snelling Tad S Sonstegard Roger T Stone Yoshikazu Sugimoto Akiko Takasuga Jeremy F Taylor Curtis P Van Tassell Michael D Macneil Antonio R R Abatepaulo Colette A Abbey Virpi Ahola Iassudara G Almeida Ariel F Amadio Elen Anatriello Suria M Bahadue Fernando H Biase Clayton R Boldt Jeffery A Carroll Wanessa A Carvalho Eliane P Cervelatti Elsa Chacko Jennifer E Chapin Ye Cheng Jungwoo Choi Adam J Colley Tatiana A de Campos Marcos De Donato Isabel K F de Miranda Santos Carlo J F de Oliveira Heather Deobald Eve Devinoy Kaitlin E Donohue Peter Dovc Annett Eberlein Carolyn J Fitzsimmons Alessandra M Franzin Gustavo R Garcia Sem Genini Cody J Gladney Jason R Grant Marion L Greaser Jonathan A Green Darryl L Hadsell Hatam A Hakimov Rob Halgren Jennifer L Harrow Elizabeth A Hart Nicola Hastings Marta Hernandez Zhi-Liang Hu Aaron Ingham Terhi Iso-Touru Catherine Jamis Kirsty Jensen Dimos Kapetis Tovah Kerr Sari S Khalil Hasan Khatib Davood Kolbehdari Charu G Kumar Dinesh Kumar Richard Leach Justin C-M Lee Changxi Li Krystin M Logan Roberto Malinverni Elisa Marques William F Martin Natalia F Martins Sandra R Maruyama Raffaele Mazza Kim L McLean Juan F Medrano Barbara T Moreno Daniela D Moré Carl T Muntean Hari P Nandakumar Marcelo F G Nogueira Ingrid Olsaker Sameer D Pant Francesca Panzitta Rosemeire C P Pastor Mario A Poli Nathan Poslusny Satyanarayana Rachagani Shoba Ranganathan Andrej Razpet Penny K Riggs Gonzalo Rincon Nelida Rodriguez-Osorio Sandra L Rodriguez-Zas Natasha E Romero Anne Rosenwald Lillian Sando Sheila M Schmutz Libing Shen Laura Sherman Bruce R Southey Ylva Strandberg Lutzow Jonathan V Sweedler Imke Tammen Bhanu Prakash V L Telugu Jennifer M Urbanski Yuri T Utsunomiya Chris P Verschoor Ashley J Waardenberg Zhiquan Wang Robert Ward Rosemarie Weikard Thomas H Welsh Stephen N White Laurens G Wilming Kris R Wunderlich Jianqi Yang Feng-Qi Zhao

Science 2009 Apr;324(5926):522-8

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http://dx.doi.org/10.1126/science.1169588	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2943200	PMC

April 2009

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds.

Authors:

Richard A Gibbs Jeremy F Taylor Curtis P Van Tassell William Barendse Kellye A Eversole Clare A Gill Ronnie D Green Debora L Hamernik Steven M Kappes Sigbjørn Lien Lakshmi K Matukumalli John C McEwan Lynne V Nazareth Robert D Schnabel George M Weinstock David A Wheeler Paolo Ajmone-Marsan Paul J Boettcher Alexandre R Caetano Jose Fernando Garcia Olivier Hanotte Paola Mariani Loren C Skow Tad S Sonstegard John L Williams Boubacar Diallo Lemecha Hailemariam Mario L Martinez Chris A Morris Luiz O C Silva Richard J Spelman Woudyalew Mulatu Keyan Zhao Colette A Abbey Morris Agaba Flábio R Araujo Rowan J Bunch James Burton Chiara Gorni Hanotte Olivier Blair E Harrison Bill Luff Marco A Machado Joel Mwakaya Graham Plastow Warren Sim Timothy Smith Merle B Thomas Alessio Valentini Paul Williams James Womack John A Woolliams Yue Liu Xiang Qin Kim C Worley Chuan Gao Huaiyang Jiang Stephen S Moore Yanru Ren Xing-Zhi Song Carlos D Bustamante Ryan D Hernandez Donna M Muzny Shobha Patil Anthony San Lucas Qing Fu Matthew P Kent Richard Vega Aruna Matukumalli Sean McWilliam Gert Sclep Katarzyna Bryc Jungwoo Choi Hong Gao John J Grefenstette Brenda Murdoch Alessandra Stella Rafael Villa-Angulo Mark Wright Jan Aerts Oliver Jann Riccardo Negrini Mike E Goddard Ben J Hayes Daniel G Bradley Marcos Barbosa da Silva Lilian P L Lau George E Liu David J Lynn Francesca Panzitta Ken G Dodds

Science 2009 Apr;324(5926):528-32

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http://dx.doi.org/10.1126/science.1167936	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2735092	PMC

April 2009

High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle.

Authors:

Elisa Marques Robert D Schnabel Paul Stothard Davood Kolbehdari Zhiquan Wang Jeremy F Taylor Stephen S Moore

BMC Genet 2008 Jul 8;9:45. Epub 2008 Jul 8.

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, T6G 2P5, Canada.

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http://dx.doi.org/10.1186/1471-2156-9-45	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2478670	PMC

July 2008

An assessment of population structure in eight breeds of cattle using a whole genome SNP panel.

Authors:

Stephanie D McKay Robert D Schnabel Brenda M Murdoch Lakshmi K Matukumalli Jan Aerts Wouter Coppieters Denny Crews Emmanuel Dias Neto Clare A Gill Chuan Gao Hideyuki Mannen Zhiquan Wang Curt P Van Tassell John L Williams Jeremy F Taylor Stephen S Moore

BMC Genet 2008 May 20;9:37. Epub 2008 May 20.

Department of Agricultural, Food and Nutritional Science, University of Alberta, Edmonton, AB, Canada.

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http://dx.doi.org/10.1186/1471-2156-9-37	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2408608	PMC

May 2008

Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panel.

Authors:

Mehar S Khatkar Frank W Nicholas Andrew R Collins Kyall R Zenger Julie A L Cavanagh Wes Barris Robert D Schnabel Jeremy F Taylor Herman W Raadsma

BMC Genomics 2008 Apr 24;9:187. Epub 2008 Apr 24.

Centre for Advanced Technologies in Animal Genetics and Reproduction (ReproGen), University of Sydney, Camden, NSW 2570, Australia.

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http://dx.doi.org/10.1186/1471-2164-9-187	DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386485	PMC

April 2008

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Authors:

Curtis P Van Tassell Timothy P L Smith Lakshmi K Matukumalli Jeremy F Taylor Robert D Schnabel Cynthia Taylor Lawley Christian D Haudenschild Stephen S Moore Wesley C Warren Tad S Sonstegard

Nat Methods 2008 Mar 24;5(3):247-52. Epub 2008 Feb 24.

Bovine Functional Genomics Laboratory, United States Department of Agriculture, Agricultural Research Service, 10300 Baltimore Avenue, Beltsville, Maryland 20705, USA.

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