Publications by authors named "Robert A Edwards"

161Publications

Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes.

Microorganisms 2021 Jan 8;9(1). Epub 2021 Jan 8.

Computational Sciences Research Center, San Diego State University, 5500 Campanile Drive, San Diego, CA 92182, USA.

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January 2021

PhANNs, a fast and accurate tool and web server to classify phage structural proteins.

PLoS Comput Biol 2020 11 2;16(11):e1007845. Epub 2020 Nov 2.

Computational Science Research Center, San Diego State University, San Diego, United States of America.

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November 2020

α-Ketoglutarate attenuates Wnt signaling and drives differentiation in colorectal cancer.

Nat Cancer 2020 Mar 20;1(3):345-358. Epub 2020 Mar 20.

Department of Molecular Biology and Biochemistry, University of California, Irvine, Irvine, CA 92697, USA.

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March 2020

Standardized bacteriophage purification for personalized phage therapy.

Nat Protoc 2020 09 24;15(9):2867-2890. Epub 2020 Jul 24.

Department of Biology, San Diego State University, San Diego, CA, USA.

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September 2020

Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics.

Metabolites 2020 Apr 17;10(4). Epub 2020 Apr 17.

Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA 92182, USA.

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April 2020

Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents.

Ecol Evol 2020 Apr 10;10(7):3413-3423. Epub 2020 Mar 10.

Center for Marine Biodiversity and Conservation Scripps Institution of Oceanography University of California San Diego CA USA.

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April 2020

PHANOTATE: a novel approach to gene identification in phage genomes.

Bioinformatics 2019 11;35(22):4537-4542

Computational Sciences Research Center, San Diego State University, San Diego, CA 92182, USA.

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November 2019

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage.

Authors:
Robert A Edwards Alejandro A Vega Holly M Norman Maria Ohaeri Kyle Levi Elizabeth A Dinsdale Ondrej Cinek Ramy K Aziz Katelyn McNair Jeremy J Barr Kyle Bibby Stan J J Brouns Adrian Cazares Patrick A de Jonge Christelle Desnues Samuel L Díaz Muñoz Peter C Fineran Alexander Kurilshikov Rob Lavigne Karla Mazankova David T McCarthy Franklin L Nobrega Alejandro Reyes Muñoz German Tapia Nicole Trefault Alexander V Tyakht Pablo Vinuesa Jeroen Wagemans Alexandra Zhernakova Frank M Aarestrup Gunduz Ahmadov Abeer Alassaf Josefa Anton Abigail Asangba Emma K Billings Vito Adrian Cantu Jane M Carlton Daniel Cazares Gyu-Sung Cho Tess Condeff Pilar Cortés Mike Cranfield Daniel A Cuevas Rodrigo De la Iglesia Przemyslaw Decewicz Michael P Doane Nathaniel J Dominy Lukasz Dziewit Bashir Mukhtar Elwasila A Murat Eren Charles Franz Jingyuan Fu Cristina Garcia-Aljaro Elodie Ghedin Kristen M Gulino John M Haggerty Steven R Head Rene S Hendriksen Colin Hill Heikki Hyöty Elena N Ilina Mitchell T Irwin Thomas C Jeffries Juan Jofre Randall E Junge Scott T Kelley Mohammadali Khan Mirzaei Martin Kowalewski Deepak Kumaresan Steven R Leigh David Lipson Eugenia S Lisitsyna Montserrat Llagostera Julia M Maritz Linsey C Marr Angela McCann Shahar Molshanski-Mor Silvia Monteiro Benjamin Moreira-Grez Megan Morris Lawrence Mugisha Maite Muniesa Horst Neve Nam-Phuong Nguyen Olivia D Nigro Anders S Nilsson Taylor O'Connell Rasha Odeh Andrew Oliver Mariana Piuri Aaron J Prussin Ii Udi Qimron Zhe-Xue Quan Petra Rainetova Adán Ramírez-Rojas Raul Raya Kim Reasor Gillian A O Rice Alessandro Rossi Ricardo Santos John Shimashita Elyse N Stachler Lars C Stene Ronan Strain Rebecca Stumpf Pedro J Torres Alan Twaddle MaryAnn Ugochi Ibekwe Nicolás Villagra Stephen Wandro Bryan White Andy Whiteley Katrine L Whiteson Cisca Wijmenga Maria M Zambrano Henrike Zschach Bas E Dutilh

Nat Microbiol 2019 10 8;4(10):1727-1736. Epub 2019 Jul 8.

Theoretical Biology and Bioinformatics, Science4Life, Utrecht University, Utrecht, The Netherlands.

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October 2019

CRTAM Shapes the Gut Microbiota and Enhances the Severity of Infection.

J Immunol 2019 07 29;203(2):532-543. Epub 2019 May 29.

Division of Host-Microbe Systems and Therapeutics, Department of Pediatrics, University of California, San Diego, La Jolla, CA 92093;

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July 2019