Riyue Bao

Riyue Bao

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Riyue Bao

Publications by authors named "Riyue Bao"

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Interferon-β corrects massive gene dysregulation in multiple sclerosis: Short-term and long-term effects on immune regulation and neuroprotection.

EBioMedicine 2019 Nov 21;49:269-283. Epub 2019 Oct 21.

Department of Neurology and the Grossman Institute for Neuroscience, Quantitative Biology and Human Behavior, University of Chicago, Chicago, IL 60637, United States. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2019.09.059DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6945282PMC
November 2019

Genome sequencing and transcriptome analyses of the Siberian hamster hypothalamus identify mechanisms for seasonal energy balance.

Proc Natl Acad Sci U S A 2019 Jun 12;116(26):13116-13121. Epub 2019 Jun 12.

Institute for Biodiversity, Animal Health and Comparative Medicine, University of Glasgow, Glasgow G61 1QH, United Kingdom;

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http://dx.doi.org/10.1073/pnas.1902896116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6600942PMC
June 2019

WNT/β-catenin Pathway Activation Correlates with Immune Exclusion across Human Cancers.

Clin Cancer Res 2019 May 11;25(10):3074-3083. Epub 2019 Jan 11.

Department of Medicine, The University of Chicago, Chicago, Illinois.

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http://clincancerres.aacrjournals.org/lookup/doi/10.1158/107
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http://dx.doi.org/10.1158/1078-0432.CCR-18-1942DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522301PMC
May 2019

Response to Anti-PD-1 in Uveal Melanoma Without High-Volume Liver Metastasis.

J Natl Compr Canc Netw 2019 Feb;17(2):114-117

bDepartment of Medicine, University of Chicago, Chicago, Illinois.

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http://dx.doi.org/10.6004/jnccn.2018.7070DOI Listing
February 2019

The histone deacetylase SIRT6 blocks myostatin expression and development of muscle atrophy.

Sci Rep 2017 09 19;7(1):11877. Epub 2017 Sep 19.

Department of Surgery, The Pritzker School of Medicine, The University of Chicago, Chicago, IL, 60637, USA.

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http://dx.doi.org/10.1038/s41598-017-10838-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605688PMC
September 2017

Low Recombination Proficiency Score (RPS) Predicts Heightened Sensitivity to DNA-Damaging Chemotherapy in Breast Cancer.

Clin Cancer Res 2017 Aug 24;23(15):4493-4500. Epub 2017 Mar 24.

Department of Radiation and Cellular Oncology, University of Chicago, Chicago, Illinois.

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http://dx.doi.org/10.1158/1078-0432.CCR-16-2845DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5540755PMC
August 2017

Critical role of the cAMP-PKA pathway in hyperglycemia-induced epigenetic activation of fibrogenic program in the kidney.

FASEB J 2017 05 1;31(5):2065-2075. Epub 2017 Feb 1.

Department of Medicine The University of Chicago, Chicago, Illinois, USA;

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http://dx.doi.org/10.1096/fj.201601116RDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388553PMC
May 2017

Late gestational intermittent hypoxia induces metabolic and epigenetic changes in male adult offspring mice.

J Physiol 2017 04 22;595(8):2551-2568. Epub 2017 Feb 22.

Section of Pediatric Sleep Medicine, Department of Pediatrics, University of Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1113/JP273570DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5390895PMC
April 2017

DNA Methylation Profiling of Blood Monocytes in Patients With Obesity Hypoventilation Syndrome: Effect of Positive Airway Pressure Treatment.

Chest 2016 07 26;150(1):91-101. Epub 2016 Feb 26.

Section of Pediatric Sleep Medicine, Department of Pediatrics, Pritzker School of Medicine, University of Chicago, Chicago, IL. Electronic address:

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http://dx.doi.org/10.1016/j.chest.2016.02.648DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6026248PMC
July 2016

Molecular Drivers of the Non-T-cell-Inflamed Tumor Microenvironment in Urothelial Bladder Cancer.

Cancer Immunol Res 2016 07 17;4(7):563-8. Epub 2016 May 17.

Department of Medicine, Section of Hematology/Oncology, University of Chicago, Chicago, Illinois. Department of Pathology, University of Chicago, Chicago, Illinois.

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http://dx.doi.org/10.1158/2326-6066.CIR-15-0274DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4943758PMC
July 2016

Whole-exome Sequence Analysis Implicates Rare Il17REL Variants in Familial and Sporadic Inflammatory Bowel Disease.

Inflamm Bowel Dis 2016 Jan;22(1):20-7

*Department of Pediatrics and †Center for Research Informatics, The University of Chicago, Chicago, Illinois; ‡Northern Institute for Cancer Research, Newcastle University, Newcastle-upon-Tyne, United Kingdom; §Meyerhoff Inflammatory Bowel Disease Center, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland; ‖Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland; ¶F. Widjaja Family Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, California; **Department of Genetics and Genomic Sciences and ††Zane Cohen Centre for Digestive Diseases, Department of Medicine, Mount Sinai Hospital, The University of Toronto, Toronto, Ontario, Canada; and ‡‡Department of Medicine, The Icahn School of Medicine at Mount Sinai, New York, New York.

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http://dx.doi.org/10.1097/MIB.0000000000000610DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4679526PMC
January 2016

Notch1 Activation or Loss Promotes HPV-Induced Oral Tumorigenesis.

Cancer Res 2015 Sep 20;75(18):3958-3969. Epub 2015 Aug 20.

Department of Radiation and Cellular Oncology, The University of Chicago, Chicago, Illinois, 60637, United States.

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http://dx.doi.org/10.1158/0008-5472.CAN-15-0199DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573897PMC
September 2015

Integrated genomic analysis suggests MLL3 is a novel candidate susceptibility gene for familial nasopharyngeal carcinoma.

Cancer Epidemiol Biomarkers Prev 2015 Aug 26;24(8):1222-8. Epub 2015 May 26.

Department of Pediatrics, The University of Chicago, Chicago, Illinois. The University of Chicago Comprehensive Cancer Center, The University of Chicago, Chicago, Illinois.

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http://dx.doi.org/10.1158/1055-9965.EPI-15-0275DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4526396PMC
August 2015

Melanoma-intrinsic β-catenin signalling prevents anti-tumour immunity.

Nature 2015 Jul 11;523(7559):231-5. Epub 2015 May 11.

1] Department of Pathology, The University of Chicago, Chicago, Illinois 60637, USA [2] Department of Medicine, The University of Chicago, Chicago, Illinois 60637, USA.

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http://dx.doi.org/10.1038/nature14404DOI Listing
July 2015

A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor.

Curr Biol 2015 Mar 5;25(5):613-20. Epub 2015 Feb 5.

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2014.12.057DOI Listing
March 2015

Review of current methods, applications, and data management for the bioinformatics analysis of whole exome sequencing.

Cancer Inform 2014 21;13(Suppl 2):67-82. Epub 2014 Sep 21.

Biomedical Informatics Center (NUBIC), Clinical and Translational Sciences Institute (NUCATS), Northwestern University, Chicago, IL, USA.

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http://dx.doi.org/10.4137/CIN.S13779DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4179624PMC
October 2014

Analysis and correction of crosstalk effects in pathway analysis.

Genome Res 2013 Nov 9;23(11):1885-93. Epub 2013 Aug 9.

Computer Science Department, Wayne State University, Detroit, Michigan 48084, USA;

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http://dx.doi.org/10.1101/gr.153551.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3814888PMC
November 2013

Detecting phenotype-specific interactions between biological processes from microarray data and annotations.

IEEE/ACM Trans Comput Biol Bioinform 2012 Sep-Oct;9(5):1399-409

Microsoft Corp., Redmond, WA 98052, USA.

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http://dx.doi.org/10.1109/TCBB.2012.65DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3748606PMC
January 2013

Parallel duplication and partial subfunctionalization of β-catenin/armadillo during insect evolution.

Mol Biol Evol 2012 Feb 1;29(2):647-62. Epub 2011 Sep 1.

Department of Biological Sciences, Wayne State University, USA.

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http://dx.doi.org/10.1093/molbev/msr219DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3283115PMC
February 2012

Phototransduction and clock gene expression in the troglobiont beetle Ptomaphagus hirtus of Mammoth cave.

J Exp Biol 2011 Nov;214(Pt 21):3532-41

Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI 48202, USA.

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http://jeb.biologists.org/cgi/doi/10.1242/jeb.060368
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http://dx.doi.org/10.1242/jeb.060368DOI Listing
November 2011

The Pax gene eyegone facilitates repression of eye development in Tribolium.

Evodevo 2011 Apr 4;2(1). Epub 2011 Apr 4.

Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI 48202, USA.

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http://dx.doi.org/10.1186/2041-9139-2-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3082225PMC
April 2011

Probing the Drosophila retinal determination gene network in Tribolium (I): The early retinal genes dachshund, eyes absent and sine oculis.

Dev Biol 2009 Sep 24;333(1):202-14. Epub 2009 Mar 24.

Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI 48202, USA.

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http://dx.doi.org/10.1016/j.ydbio.2009.02.040DOI Listing
September 2009

Molecular evolution of the Drosophila retinome: exceptional gene gain in the higher Diptera.

Mol Biol Evol 2009 Jun 27;26(6):1273-87. Epub 2009 Feb 27.

Department of Biological Sciences, Wayne State University, Detroit, MI, USA.

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http://dx.doi.org/10.1093/molbev/msp039DOI Listing
June 2009

Conserved cluster organization of insect Runx genes.

Dev Genes Evol 2008 Oct 29;218(10):567-74. Epub 2008 Aug 29.

Department of Biological Sciences, Wayne State University, Detroit, MI 48202, USA.

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http://link.springer.com/10.1007/s00427-008-0244-x
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http://dx.doi.org/10.1007/s00427-008-0244-xDOI Listing
October 2008

Drosophila SIN3 is required at multiple stages of development.

Dev Dyn 2008 Oct;237(10):3040-50

Department of Biological Sciences, Wayne State University, Detroit, Michigan 48202, USA.

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http://doi.wiley.com/10.1002/dvdy.21706
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http://dx.doi.org/10.1002/dvdy.21706DOI Listing
October 2008

The genome of the model beetle and pest Tribolium castaneum.

Authors:
Stephen Richards Richard A Gibbs George M Weinstock Susan J Brown Robin Denell Richard W Beeman Richard Gibbs Richard W Beeman Susan J Brown Gregor Bucher Markus Friedrich Cornelis J P Grimmelikhuijzen Martin Klingler Marce Lorenzen Stephen Richards Siegfried Roth Reinhard Schröder Diethard Tautz Evgeny M Zdobnov Donna Muzny Richard A Gibbs George M Weinstock Tony Attaway Stephanie Bell Christian J Buhay Mimi N Chandrabose Dean Chavez Kerstin P Clerk-Blankenburg Andrew Cree Marvin Dao Clay Davis Joseph Chacko Huyen Dinh Shannon Dugan-Rocha Gerald Fowler Toni T Garner Jeffrey Garnes Andreas Gnirke Alica Hawes Judith Hernandez Sandra Hines Michael Holder Jennifer Hume Shalini N Jhangiani Vandita Joshi Ziad Mohid Khan LaRonda Jackson Christie Kovar Andrea Kowis Sandra Lee Lora R Lewis Jon Margolis Margaret Morgan Lynne V Nazareth Ngoc Nguyen Geoffrey Okwuonu David Parker Stephen Richards San-Juana Ruiz Jireh Santibanez Joël Savard Steven E Scherer Brian Schneider Erica Sodergren Diethard Tautz Selina Vattahil Donna Villasana Courtney S White Rita Wright Yoonseong Park Richard W Beeman Jeff Lord Brenda Oppert Marce Lorenzen Susan Brown Liangjiang Wang Joël Savard Diethard Tautz Stephen Richards George Weinstock Richard A Gibbs Yue Liu Kim Worley George Weinstock Christine G Elsik Justin T Reese Eran Elhaik Giddy Landan Dan Graur Peter Arensburger Peter Atkinson Richard W Beeman Jim Beidler Susan J Brown Jeffery P Demuth Douglas W Drury Yu-Zhou Du Haruhiko Fujiwara Marce Lorenzen Vincenza Maselli Mizuko Osanai Yoonseong Park Hugh M Robertson Zhijian Tu Jian-jun Wang Suzhi Wang Stephen Richards Henry Song Lan Zhang Erica Sodergren Doreen Werner Mario Stanke Burkhard Morgenstern Victor Solovyev Peter Kosarev Garth Brown Hsiu-Chuan Chen Olga Ermolaeva Wratko Hlavina Yuri Kapustin Boris Kiryutin Paul Kitts Donna Maglott Kim Pruitt Victor Sapojnikov Alexandre Souvorov Aaron J Mackey Robert M Waterhouse Stefan Wyder Evgeny M Zdobnov Evgeny M Zdobnov Stefan Wyder Evgenia V Kriventseva Tatsuhiko Kadowaki Peer Bork Manuel Aranda Riyue Bao Anke Beermann Nicola Berns Renata Bolognesi François Bonneton Daniel Bopp Susan J Brown Gregor Bucher Thomas Butts Arnaud Chaumot Robin E Denell David E K Ferrier Markus Friedrich Cassondra M Gordon Marek Jindra Martin Klingler Que Lan H Michael G Lattorff Vincent Laudet Cornelia von Levetsow Zhenyi Liu Rebekka Lutz Jeremy A Lynch Rodrigo Nunes da Fonseca Nico Posnien Rolf Reuter Siegfried Roth Joël Savard Johannes B Schinko Christian Schmitt Michael Schoppmeier Reinhard Schröder Teresa D Shippy Franck Simonnet Henrique Marques-Souza Diethard Tautz Yoshinori Tomoyasu Jochen Trauner Maurijn Van der Zee Michel Vervoort Nadine Wittkopp Ernst A Wimmer Xiaoyun Yang Andrew K Jones David B Sattelle Paul R Ebert David Nelson Jeffrey G Scott Richard W Beeman Subbaratnam Muthukrishnan Karl J Kramer Yasuyuki Arakane Richard W Beeman Qingsong Zhu David Hogenkamp Radhika Dixit Brenda Oppert Haobo Jiang Zhen Zou Jeremy Marshall Elena Elpidina Konstantin Vinokurov Cris Oppert Zhen Zou Jay Evans Zhiqiang Lu Picheng Zhao Niranji Sumathipala Boran Altincicek Andreas Vilcinskas Michael Williams Dan Hultmark Charles Hetru Haobo Jiang Cornelis J P Grimmelikhuijzen Frank Hauser Giuseppe Cazzamali Michael Williamson Yoonseong Park Bin Li Yoshiaki Tanaka Reinhard Predel Susanne Neupert Joachim Schachtner Peter Verleyen Florian Raible Peer Bork Markus Friedrich Kimberly K O Walden Hugh M Robertson Sergio Angeli Sylvain Forêt Gregor Bucher Stefan Schuetz Ryszard Maleszka Ernst A Wimmer Richard W Beeman Marce Lorenzen Yoshinori Tomoyasu Sherry C Miller Daniela Grossmann Gregor Bucher

Nature 2008 Apr 23;452(7190):949-55. Epub 2008 Mar 23.

Human Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature06784DOI Listing
April 2008

Fast co-evolution of sevenless and bride of sevenless in endopterygote insects.

Dev Genes Evol 2008 Apr 8;218(3-4):215-20. Epub 2008 Apr 8.

Department of Biological Sciences, Wayne State University, 5047 Gullen Mall, Detroit, MI 48202, USA.

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http://dx.doi.org/10.1007/s00427-007-0201-0DOI Listing
April 2008