Richard Villems

Richard Villems

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Richard Villems

Richard Villems

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Origin and spread of human mitochondrial DNA haplogroup U7.

Sci Rep 2017 04 7;7:46044. Epub 2017 Apr 7.

Evolutionary Biology Group, Estonian Biocentre, Tartu 51010, Estonia.

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http://dx.doi.org/10.1038/srep46044DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5384202PMC
April 2017

Genomic analyses inform on migration events during the peopling of Eurasia.

Authors:
Luca Pagani Daniel John Lawson Evelyn Jagoda Alexander Mörseburg Anders Eriksson Mario Mitt Florian Clemente Georgi Hudjashov Michael DeGiorgio Lauri Saag Jeffrey D Wall Alexia Cardona Reedik Mägi Melissa A Wilson Sayres Sarah Kaewert Charlotte Inchley Christiana L Scheib Mari Järve Monika Karmin Guy S Jacobs Tiago Antao Florin Mircea Iliescu Alena Kushniarevich Qasim Ayub Chris Tyler-Smith Yali Xue Bayazit Yunusbayev Kristiina Tambets Chandana Basu Mallick Lehti Saag Elvira Pocheshkhova George Andriadze Craig Muller Michael C Westaway David M Lambert Grigor Zoraqi Shahlo Turdikulova Dilbar Dalimova Zhaxylyk Sabitov Gazi Nurun Nahar Sultana Joseph Lachance Sarah Tishkoff Kuvat Momynaliev Jainagul Isakova Larisa D Damba Marina Gubina Pagbajabyn Nymadawa Irina Evseeva Lubov Atramentova Olga Utevska François-Xavier Ricaut Nicolas Brucato Herawati Sudoyo Thierry Letellier Murray P Cox Nikolay A Barashkov Vedrana Skaro Lejla Mulahasanovic Dragan Primorac Hovhannes Sahakyan Maru Mormina Christina A Eichstaedt Daria V Lichman Syafiq Abdullah Gyaneshwer Chaubey Joseph T S Wee Evelin Mihailov Alexandra Karunas Sergei Litvinov Rita Khusainova Natalya Ekomasova Vita Akhmetova Irina Khidiyatova Damir Marjanović Levon Yepiskoposyan Doron M Behar Elena Balanovska Andres Metspalu Miroslava Derenko Boris Malyarchuk Mikhail Voevoda Sardana A Fedorova Ludmila P Osipova Marta Mirazón Lahr Pascale Gerbault Matthew Leavesley Andrea Bamberg Migliano Michael Petraglia Oleg Balanovsky Elza K Khusnutdinova Ene Metspalu Mark G Thomas Andrea Manica Rasmus Nielsen Richard Villems Eske Willerslev Toomas Kivisild Mait Metspalu

Nature 2016 Oct 21;538(7624):238-242. Epub 2016 Sep 21.

Estonian Biocentre, Tartu, Estonia.

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http://dx.doi.org/10.1038/nature19792DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5164938PMC
October 2016

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Nature 2016 Oct 21;538(7624):201-206. Epub 2016 Sep 21.

Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA.

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http://dx.doi.org/10.1038/nature18964DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5161557PMC
October 2016

POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans.

Authors:
Maanasa Raghavan Matthias Steinrücken Kelley Harris Stephan Schiffels Simon Rasmussen Michael DeGiorgio Anders Albrechtsen Cristina Valdiosera María C Ávila-Arcos Anna-Sapfo Malaspinas Anders Eriksson Ida Moltke Mait Metspalu Julian R Homburger Jeff Wall Omar E Cornejo J Víctor Moreno-Mayar Thorfinn S Korneliussen Tracey Pierre Morten Rasmussen Paula F Campos Peter de Barros Damgaard Morten E Allentoft John Lindo Ene Metspalu Ricardo Rodríguez-Varela Josefina Mansilla Celeste Henrickson Andaine Seguin-Orlando Helena Malmström Thomas Stafford Suyash S Shringarpure Andrés Moreno-Estrada Monika Karmin Kristiina Tambets Anders Bergström Yali Xue Vera Warmuth Andrew D Friend Joy Singarayer Paul Valdes Francois Balloux Ilán Leboreiro Jose Luis Vera Hector Rangel-Villalobos Davide Pettener Donata Luiselli Loren G Davis Evelyne Heyer Christoph P E Zollikofer Marcia S Ponce de León Colin I Smith Vaughan Grimes Kelly-Anne Pike Michael Deal Benjamin T Fuller Bernardo Arriaza Vivien Standen Maria F Luz Francois Ricaut Niede Guidon Ludmila Osipova Mikhail I Voevoda Olga L Posukh Oleg Balanovsky Maria Lavryashina Yuri Bogunov Elza Khusnutdinova Marina Gubina Elena Balanovska Sardana Fedorova Sergey Litvinov Boris Malyarchuk Miroslava Derenko M J Mosher David Archer Jerome Cybulski Barbara Petzelt Joycelynn Mitchell Rosita Worl Paul J Norman Peter Parham Brian M Kemp Toomas Kivisild Chris Tyler-Smith Manjinder S Sandhu Michael Crawford Richard Villems David Glenn Smith Michael R Waters Ted Goebel John R Johnson Ripan S Malhi Mattias Jakobsson David J Meltzer Andrea Manica Richard Durbin Carlos D Bustamante Yun S Song Rasmus Nielsen Eske Willerslev

Science 2015 Aug 21;349(6250):aab3884. Epub 2015 Jul 21.

Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Øster Voldgade 5-7, 1350 Copenhagen, Denmark.

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http://dx.doi.org/10.1126/science.aab3884DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4733658PMC
August 2015

A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Authors:
Monika Karmin Lauri Saag Mário Vicente Melissa A Wilson Sayres Mari Järve Ulvi Gerst Talas Siiri Rootsi Anne-Mai Ilumäe Reedik Mägi Mario Mitt Luca Pagani Tarmo Puurand Zuzana Faltyskova Florian Clemente Alexia Cardona Ene Metspalu Hovhannes Sahakyan Bayazit Yunusbayev Georgi Hudjashov Michael DeGiorgio Eva-Liis Loogväli Christina Eichstaedt Mikk Eelmets Gyaneshwer Chaubey Kristiina Tambets Sergei Litvinov Maru Mormina Yali Xue Qasim Ayub Grigor Zoraqi Thorfinn Sand Korneliussen Farida Akhatova Joseph Lachance Sarah Tishkoff Kuvat Momynaliev François-Xavier Ricaut Pradiptajati Kusuma Harilanto Razafindrazaka Denis Pierron Murray P Cox Gazi Nurun Nahar Sultana Rane Willerslev Craig Muller Michael Westaway David Lambert Vedrana Skaro Lejla Kovačevic Shahlo Turdikulova Dilbar Dalimova Rita Khusainova Natalya Trofimova Vita Akhmetova Irina Khidiyatova Daria V Lichman Jainagul Isakova Elvira Pocheshkhova Zhaxylyk Sabitov Nikolay A Barashkov Pagbajabyn Nymadawa Evelin Mihailov Joseph Wee Tien Seng Irina Evseeva Andrea Bamberg Migliano Syafiq Abdullah George Andriadze Dragan Primorac Lubov Atramentova Olga Utevska Levon Yepiskoposyan Damir Marjanovic Alena Kushniarevich Doron M Behar Christian Gilissen Lisenka Vissers Joris A Veltman Elena Balanovska Miroslava Derenko Boris Malyarchuk Andres Metspalu Sardana Fedorova Anders Eriksson Andrea Manica Fernando L Mendez Tatiana M Karafet Krishna R Veeramah Neil Bradman Michael F Hammer Ludmila P Osipova Oleg Balanovsky Elza K Khusnutdinova Knut Johnsen Maido Remm Mark G Thomas Chris Tyler-Smith Peter A Underhill Eske Willerslev Rasmus Nielsen Mait Metspalu Richard Villems Toomas Kivisild

Genome Res 2015 Apr 13;25(4):459-66. Epub 2015 Mar 13.

Estonian Biocentre, Tartu, 51010, Estonia; Division of Biological Anthropology, University of Cambridge, Cambridge, CB2 1QH, United Kingdom;

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https://bib.irb.hr/datoteka/715300.2015_Genome_Res._Karmin-A
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http://genome.cshlp.org/lookup/doi/10.1101/gr.186684.114
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http://dx.doi.org/10.1101/gr.186684.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381518PMC
April 2015

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:
Iosif Lazaridis Nick Patterson Alissa Mittnik Gabriel Renaud Swapan Mallick Karola Kirsanow Peter H Sudmant Joshua G Schraiber Sergi Castellano Mark Lipson Bonnie Berger Christos Economou Ruth Bollongino Qiaomei Fu Kirsten I Bos Susanne Nordenfelt Heng Li Cesare de Filippo Kay Prüfer Susanna Sawyer Cosimo Posth Wolfgang Haak Fredrik Hallgren Elin Fornander Nadin Rohland Dominique Delsate Michael Francken Jean-Michel Guinet Joachim Wahl George Ayodo Hamza A Babiker Graciela Bailliet Elena Balanovska Oleg Balanovsky Ramiro Barrantes Gabriel Bedoya Haim Ben-Ami Judit Bene Fouad Berrada Claudio M Bravi Francesca Brisighelli George B J Busby Francesco Cali Mikhail Churnosov David E C Cole Daniel Corach Larissa Damba George van Driem Stanislav Dryomov Jean-Michel Dugoujon Sardana A Fedorova Irene Gallego Romero Marina Gubina Michael Hammer Brenna M Henn Tor Hervig Ugur Hodoglugil Aashish R Jha Sena Karachanak-Yankova Rita Khusainova Elza Khusnutdinova Rick Kittles Toomas Kivisild William Klitz Vaidutis Kučinskas Alena Kushniarevich Leila Laredj Sergey Litvinov Theologos Loukidis Robert W Mahley Béla Melegh Ene Metspalu Julio Molina Joanna Mountain Klemetti Näkkäläjärvi Desislava Nesheva Thomas Nyambo Ludmila Osipova Jüri Parik Fedor Platonov Olga Posukh Valentino Romano Francisco Rothhammer Igor Rudan Ruslan Ruizbakiev Hovhannes Sahakyan Antti Sajantila Antonio Salas Elena B Starikovskaya Ayele Tarekegn Draga Toncheva Shahlo Turdikulova Ingrida Uktveryte Olga Utevska René Vasquez Mercedes Villena Mikhail Voevoda Cheryl A Winkler Levon Yepiskoposyan Pierre Zalloua Tatijana Zemunik Alan Cooper Cristian Capelli Mark G Thomas Andres Ruiz-Linares Sarah A Tishkoff Lalji Singh Kumarasamy Thangaraj Richard Villems David Comas Rem Sukernik Mait Metspalu Matthias Meyer Evan E Eichler Joachim Burger Montgomery Slatkin Svante Pääbo Janet Kelso David Reich Johannes Krause

Nature 2014 Sep;513(7518):409-13

1] Institute for Archaeological Sciences, University of Tübingen, Tübingen 72074, Germany. [2] Senckenberg Centre for Human Evolution and Palaeoenvironment, University of Tübingen, 72070 Tübingen, Germany. [3] Max Planck Institut für Geschichte und Naturwissenschaften, Jena 07745, Germany.

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https://genetics.med.harvard.edu/reich/Reich_Lab/Welcome_fil
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http://biorxiv.org/content/biorxiv/early/2013/12/23/001552.f
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http://www.geo.uni-tuebingen.de/fileadmin/website/arbeitsber
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http://www.nature.com/doifinder/10.1038/nature13673
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http://dx.doi.org/10.1038/nature13673DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4170574PMC
September 2014

Global patterns of diversity and selection in human tyrosinase gene.

PLoS One 2013 11;8(9):e74307. Epub 2013 Sep 11.

Evolutionary Biology Group, Estonian Biocentre, Tartu, Estonia ; Department of Evolutionary Biology, Institute of Molecular and Cell Biology, University of Tartu, Tartu, Estonia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074307PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3770694PMC
June 2014

Variation at diabetes- and obesity-associated Loci may mirror neutral patterns of human population diversity and diabetes prevalence in India.

Ann Hum Genet 2013 Sep 1;77(5):392-408. Epub 2013 Jul 1.

Department of Molecular Biology and Genetics, 101 Biotechnology Building, Cornell University, Ithaca, NY, 14853, USA; Division of Biological Anthropology, Henry Wellcome Building, Fitzwilliam Street, Cambridge, CB2 1QH, UK.

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http://dx.doi.org/10.1111/ahg.12028DOI Listing
September 2013

Croatian genetic heritage: Y-chromosome story.

Croat Med J 2011 Jun;52(3):225-34

Dragan Primorac, University of Split School of Medicine, Soltanska 2, 21 000 Split, Croatia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118711PMC
http://dx.doi.org/10.3325/cmj.2011.52.225DOI Listing
June 2011

Mitochondrial DNA heritage of Cres Islanders--example of Croatian genetic outliers.

Coll Antropol 2009 Dec;33(4):1323-8

Institute for Anthropological Research, Zagreb, Croatia.

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December 2009

Phylogeographic analysis of mitochondrial DNA in northern Asian populations.

Am J Hum Genet 2007 Nov 1;81(5):1025-41. Epub 2007 Oct 1.

Genetics Laboratory, Institute of Biological Problems of the North, Russian Academy of Sciences, Magadan, Russia.

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http://dx.doi.org/10.1086/522933DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2265662PMC
November 2007

Y-chromosomal diversity in the population of Guinea-Bissau: a multiethnic perspective.

BMC Evol Biol 2007 Jul 27;7:124. Epub 2007 Jul 27.

Department of Evolutionary Biology, Estonian Biocentre, Riia 23, Tartu, Estonia.

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http://dx.doi.org/10.1186/1471-2148-7-124DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1976131PMC
July 2007

Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis.

Proc Natl Acad Sci U S A 2007 May 11;104(21):8726-30. Epub 2007 May 11.

Estonian Biocentre and Tartu University, Department of Evolutionary Biology, Riia 23, 51010 Tartu, Estonia.

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http://dx.doi.org/10.1073/pnas.0702928104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1885570PMC
May 2007

High prevalence of the CCR5Delta32 HIV-resistance mutation among Estonian HIV type 1-infected individuals.

AIDS Res Hum Retroviruses 2007 Feb;23(2):193-7

FIT Biotech Oyj Plc Eesti Filiaal, Institute of Molecular and Cell Biology, University of Tartu, Nooruse 9, Tartu 50411, Estonia.

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http://dx.doi.org/10.1089/aid.2006.0113DOI Listing
February 2007

Peopling of South Asia: investigating the caste-tribe continuum in India.

Bioessays 2007 Jan;29(1):91-100

Department of Evolutionary Biology, Institute of Molecular and Cell Biology, University of Tartu and Estonian Biocentre, Tartu, Estonia.

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http://dx.doi.org/10.1002/bies.20525DOI Listing
January 2007

Population data on 11 Y-chromosome STRs from Guiné-Bissau.

Forensic Sci Int 2006 Mar;157(2-3):210-7

Department of Biology, Universidade da Madeira, Campus Universitário da Penteada, 9000-390 Funchal, Portugal.

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http://dx.doi.org/10.1016/j.forsciint.2005.04.005DOI Listing
March 2006

A prehistory of Indian Y chromosomes: evaluating demic diffusion scenarios.

Proc Natl Acad Sci U S A 2006 Jan 13;103(4):843-8. Epub 2006 Jan 13.

National DNA Analysis Centre, Central Forensic Science Laboratory, Kolkata 700014, India.

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http://dx.doi.org/10.1073/pnas.0507714103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347984PMC
January 2006

Ancient DNA from the first European farmers in 7500-year-old Neolithic sites.

Science 2005 Nov;310(5750):1016-8

Institut für Anthropologie, Johannes Gutenberg Universität Mainz, Saarstrasse 21, D-55099 Mainz, Germany.

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http://dx.doi.org/10.1126/science.1118725DOI Listing
November 2005

MtDNA profile of West Africa Guineans: towards a better understanding of the Senegambia region.

Ann Hum Genet 2004 Jul;68(Pt 4):340-52

Department of Evolutionary Biology, Estonian Biocenter, Tartu University, Riia 23, 51010 Tartu, Estonia.

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http://dx.doi.org/10.1046/j.1529-8817.2004.00100.xDOI Listing
July 2004

Y-chromosome lineages in Cabo Verde Islands witness the diverse geographic origin of its first male settlers.

Hum Genet 2003 Nov 26;113(6):467-72. Epub 2003 Aug 26.

Human Genetics Laboratory, Center of Macaronesian Studies, University of Madeira, Campus of Penteada, 9000-390 Funchal, Portugal.

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http://dx.doi.org/10.1007/s00439-003-1007-4DOI Listing
November 2003

The emerging limbs and twigs of the East Asian mtDNA tree.

Mol Biol Evol 2002 Oct;19(10):1737-51

Department of Evolutionary Biology, Tartu University and Estonian Biocentre, Estonia.

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http://dx.doi.org/10.1093/oxfordjournals.molbev.a003996DOI Listing
October 2002