Publications by authors named "Richard E Green"

87 Publications

A novel NGS library preparation method to characterize native termini of fragmented DNA.

Nucleic Acids Res 2020 05;48(8):e47

Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA.

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May 2020

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos.

BMC Genomics 2019 Dec 27;20(1):1023. Epub 2019 Dec 27.

Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, 95064, USA.

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December 2019

Structural Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue.

J Mol Diagn 2019 05 31;21(3):375-383. Epub 2018 Dec 31.

Department of Pathology, Stanford University School of Medicine, Stanford, California; Department of Biomedical Data Science, Stanford University School of Medicine, Stanford, California. Electronic address:

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May 2019

New Approaches for Genome Assembly and Scaffolding.

Annu Rev Anim Biosci 2019 02 28;7:17-40. Epub 2018 Nov 28.

Department of Biomolecular Engineering, University of California, Santa Cruz, California 95064, USA; email: ,

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February 2019

Improving nanopore read accuracy with the R2C2 method enables the sequencing of highly multiplexed full-length single-cell cDNA.

Proc Natl Acad Sci U S A 2018 09 10;115(39):9726-9731. Epub 2018 Sep 10.

Department of Biomolecular Engineering, University of California, Santa Cruz, CA 95064;

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September 2018

Epigenetic maintenance of topological domains in the highly rearranged gibbon genome.

Genome Res 2018 07 18;28(7):983-997. Epub 2018 Jun 18.

Bioinformatics and Computational Biology Division, Department of Medical Informatics and Clinical Epidemiology, Oregon Health and Science University, Portland, Oregon 97239, USA.

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July 2018

Minimizing polymerase biases in metabarcoding.

Mol Ecol Resour 2018 May 24. Epub 2018 May 24.

Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California.

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May 2018

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui.

Genes (Basel) 2017 Dec 20;8(12). Epub 2017 Dec 20.

Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA 95064, USA.

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December 2017

Stable C and N isotope analysis of hair suggest undernourishment as a factor in the death of a mummified girl from late 19th century San Francisco, CA.

PLoS One 2017 18;12(9):e0184921. Epub 2017 Sep 18.

Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, California, United States of America.

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October 2017

A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures.

Forensic Sci Int Genet 2017 09 29;30:93-105. Epub 2017 May 29.

Department of Biomolecular Engineering, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA 95064, USA.

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September 2017

AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data.

BMC Bioinformatics 2017 Apr 4;18(1):203. Epub 2017 Apr 4.

Department of Biomolecular Engineering, University of California, Santa Cruz, USA.

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April 2017