Richard D Emes

Richard D Emes

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Richard D Emes

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Acute Infection in Cats Induced Tissue-Specific Transcriptional Response Dominated by Immune Signatures.

Front Immunol 2018 19;9:2403. Epub 2018 Oct 19.

State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, China.

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https://www.frontiersin.org/article/10.3389/fimmu.2018.02403
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http://dx.doi.org/10.3389/fimmu.2018.02403DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6202952PMC
October 2019

The Cross-Talk between miR-511-3p and C-Type Lectin Receptors on Dendritic Cells Affects Dendritic Cell Function.

J Immunol 2019 Jul 22;203(1):148-157. Epub 2019 May 22.

Division of Immunology, School of Life Sciences, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham NG7 2RD, United Kingdom;

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http://www.jimmunol.org/lookup/doi/10.4049/jimmunol.1801108
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http://dx.doi.org/10.4049/jimmunol.1801108DOI Listing
July 2019

Detection and analysis of RNA methylation.

F1000Res 2019 26;8. Epub 2019 Apr 26.

School of Veterinary Medicine and Sciences, University of Nottingham, Sutton Bonington Campus, Loughborough, UK.

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https://f1000research.com/articles/8-559/v1
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http://dx.doi.org/10.12688/f1000research.17956.1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6489984PMC
April 2019

Evolution of gene expression levels in the male reproductive organs of mosquitoes.

Life Sci Alliance 2019 02 2;2(1):e201800191. Epub 2019 Jan 2.

School of Veterinary Medicine and Science, Sutton Bonington Campus, University of Nottingham, Leicestershire, UK.

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http://www.life-science-alliance.org/lookup/doi/10.26508/lsa
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http://dx.doi.org/10.26508/lsa.201800191DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6315087PMC
February 2019

Maternal genome-wide DNA methylation profiling in gestational diabetes shows distinctive disease-associated changes relative to matched healthy pregnancies.

Epigenetics 2018 25;13(2):122-128. Epub 2018 Jan 25.

a Institute for Science and Technology in Medicine , Keele University, Guy Hilton Research Center , Staffordshire , UK.

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http://dx.doi.org/10.1080/15592294.2016.1166321DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5873366PMC
December 2018

Discrimination of contagious and environmental strains of Streptococcus uberis in dairy herds by means of mass spectrometry and machine-learning.

Sci Rep 2018 11 30;8(1):17517. Epub 2018 Nov 30.

University of Nottingham School of Veterinary Medicine and Science, College Road, Sutton Bonington, Leicestershire, LE12 5RD, UK.

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http://dx.doi.org/10.1038/s41598-018-35867-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269454PMC
November 2018

Paternal diet programs offspring health through sperm- and seminal plasma-specific pathways in mice.

Proc Natl Acad Sci U S A 2018 10 27;115(40):10064-10069. Epub 2018 Aug 27.

School of Biosciences, University of Nottingham, Sutton Bonington Campus, LE12 5RD Loughborough, United Kingdom.

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http://dx.doi.org/10.1073/pnas.1806333115DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6176621PMC
October 2018

Cancer reversion with oocyte extracts is mediated by cell cycle arrest and induction of tumour dormancy.

Oncotarget 2018 Mar 23;9(22):16008-16027. Epub 2018 Mar 23.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD, UK.

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http://dx.doi.org/10.18632/oncotarget.24664DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5882314PMC
March 2018

Inferring Function from Homology.

Methods Mol Biol 2017 ;1526:23-40

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Leicestershire, LE12 5RD, UK.

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http://dx.doi.org/10.1007/978-1-4939-6613-4_2DOI Listing
January 2018

A proteomic investigation into mechanisms underpinning corticosteroid effects on neural stem cells.

Mol Cell Neurosci 2018 01 9;86:30-40. Epub 2017 Nov 9.

Institute for Science and Technology in Medicine, Keele University, Keele, Staffordshire ST5 5BG, UK. Electronic address:

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http://dx.doi.org/10.1016/j.mcn.2017.11.006DOI Listing
January 2018

Complete Genome Sequences of -Specific Bacteriophages 24 and X29.

Genome Announc 2017 Nov 16;5(46). Epub 2017 Nov 16.

University of Nottingham, School of Veterinary Medicine and Science, Sutton Bonington, United Kingdom

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http://dx.doi.org/10.1128/genomeA.01013-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5690320PMC
November 2017

Complete Genome Sequences of Seven Phages Isolated in China.

Genome Announc 2017 Nov 22;5(47). Epub 2017 Nov 22.

University of Nottingham, School of Veterinary Medicine and Science, Sutton Bonington, United Kingdom

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http://dx.doi.org/10.1128/genomeA.01019-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5701463PMC
November 2017

DNA methylation at diagnosis is associated with response to disease-modifying drugs in early rheumatoid arthritis.

Epigenomics 2017 04 25;9(4):419-428. Epub 2016 Nov 25.

Guy Hilton Research Centre, Institute for Applied Clinical Sciences, Keele University, Thornburrow Drive, Hartshill, Stoke-on-Trent, Staffordshire, ST4 7QB, UK.

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http://dx.doi.org/10.2217/epi-2016-0042DOI Listing
April 2017

Evolution of complexity in the zebrafish synapse proteome.

Nat Commun 2017 03 2;8:14613. Epub 2017 Mar 2.

Genes to Cognition Programme, Centre for Clinical Brain Science, University of Edinburgh, Edinburgh EH16 4SB, UK.

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http://www.nature.com/doifinder/10.1038/ncomms14613
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http://dx.doi.org/10.1038/ncomms14613DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5337974PMC
March 2017

A Trematode Parasite Derived Growth Factor Binds and Exerts Influences on Host Immune Functions via Host Cytokine Receptor Complexes.

PLoS Pathog 2016 Nov 2;12(11):e1005991. Epub 2016 Nov 2.

Department of Infection Biology, Institute of Infection and Global Health, University of Liverpool, Liverpool, United Kingdom.

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http://dx.doi.org/10.1371/journal.ppat.1005991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5091765PMC
November 2016

PIMMS (Pragmatic Insertional Mutation Mapping System) Laboratory Methodology a Readily Accessible Tool for Identification of Essential Genes in .

Front Microbiol 2016 25;7:1645. Epub 2016 Oct 25.

School of Veterinary Medicine and Science, University of Nottingham Sutton Bonington, UK.

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http://dx.doi.org/10.3389/fmicb.2016.01645DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5078762PMC
October 2016

RNA expression of TLR10 in normal equine tissues.

BMC Res Notes 2016 Jul 19;9:353. Epub 2016 Jul 19.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Loughborough, LE12 5RD, UK.

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http://dx.doi.org/10.1186/s13104-016-2161-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4952062PMC
July 2016

DNA methylation profiling of synovial fluid FLS in rheumatoid arthritis reveals changes common with tissue-derived FLS.

Epigenomics 2015 ;7(4):539-51

Institute for Science & Technology in Medicine, Keele University, Guy Hilton Research Centre, Thornburrow Drive, Hartshill, Stoke-on-Trent, Staffordshire, ST4 7QB, UK.

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http://dx.doi.org/10.2217/epi.15.15DOI Listing
June 2016

Mapping polyclonal antibody responses to bacterial infection using next generation phage display.

Sci Rep 2016 Apr 13;6:24232. Epub 2016 Apr 13.

School of Veterinary Medicine and Science, The University of Nottingham, Sutton Bonington Campus, College Road, Sutton Bonington, Leicestershire, LE12 5RD, UK.

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http://dx.doi.org/10.1038/srep24232DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4829855PMC
April 2016

Genome-wide profiling in treatment-naive early rheumatoid arthritis reveals DNA methylome changes in T and B lymphocytes.

Epigenomics 2016 Feb 10;8(2):209-24. Epub 2015 Nov 10.

Institute for Science & Technology in Medicine, Keele University, Guy Hilton Research Centre, Thornburrow Drive, Hartshill, Stoke-on-Trent, Staffordshire, ST4 7QB, UK.

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http://dx.doi.org/10.2217/epi.15.103DOI Listing
February 2016

Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes.

Front Genet 2015 11;6:361. Epub 2016 Jan 11.

Advanced Data Analysis Centre, Sutton Bonington Campus, University of NottinghamLeicestershire, UK; School of Veterinary Medicine and Science, Sutton Bonington Campus, University of NottinghamLeicestershire, UK.

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http://dx.doi.org/10.3389/fgene.2015.00361DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4707302PMC
January 2016

Epidrug mediated re-expression of miRNA targeting the HMGA transcripts in pituitary cells.

Pituitary 2015 Oct;18(5):674-84

Human Disease and Genomics Group, Institute of Science and Technology in Medicine, School of Medicine, Keele University, Stoke-on-Trent, Staffordshire, ST4 7QB, UK.

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http://dx.doi.org/10.1007/s11102-014-0630-5DOI Listing
October 2015

Methylation of the FGFR2 gene is associated with high birth weight centile in humans.

Epigenomics 2014 ;6(5):477-91

Institute of Science & Technology in Medicine, Keele University School of Medicine, University Hospital of North Staffordshire, Stoke-on-Trent, Staffordshire, UK.

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http://dx.doi.org/10.2217/epi.14.40DOI Listing
July 2015

A predictive model for canine dilated cardiomyopathy-a meta-analysis of Doberman Pinscher data.

PeerJ 2015 26;3:e842. Epub 2015 Mar 26.

School of Veterinary Medicine and Science, Sutton Bonington Campus, University of Nottingham , Leicestershire , UK.

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http://dx.doi.org/10.7717/peerj.842DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4380154PMC
April 2015

A novel member of the let-7 microRNA family is associated with developmental transitions in filarial nematode parasites.

BMC Genomics 2015 Apr 22;16:331. Epub 2015 Apr 22.

Institute of Biodiversity, Animal Health and Comparative Medicine, College of Medical, Veterinary and Life Sciences, University of Glasgow, Garscube Estate, Bearsden Road, Glasgow, G61 1QH, UK.

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http://dx.doi.org/10.1186/s12864-015-1536-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4428239PMC
April 2015

Virulence related sequences; insights provided by comparative genomics of Streptococcus uberis of differing virulence.

BMC Genomics 2015 Apr 23;16:334. Epub 2015 Apr 23.

School of Veterinary Medicine and Science, University of Nottingham, Leicestershire, LE12 5RD, Sutton Bonington, UK.

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http://dx.doi.org/10.1186/s12864-015-1512-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4427978PMC
April 2015

Transposon insertion mapping with PIMMS - Pragmatic Insertional Mutation Mapping System.

Front Genet 2015 9;6:139. Epub 2015 Apr 9.

School of Veterinary Medicine and Science, University of Nottingham Loughborough, UK.

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http://dx.doi.org/10.3389/fgene.2015.00139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4391243PMC
April 2015

TGF-β superfamily members from the helminth Fasciola hepatica show intrinsic effects on viability and development.

Vet Res 2015 Mar 11;46:29. Epub 2015 Mar 11.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, Nottingham, LE12 5RD, UK.

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http://dx.doi.org/10.1186/s13567-015-0167-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354977PMC
March 2015

Molecular characterization of adipose tissue in the African elephant (Loxodonta africana).

PLoS One 2014 14;9(3):e91717. Epub 2014 Mar 14.

Faculty of Medicine and Health Sciences, School of Veterinary Medicine and Science, Sutton Bonington Campus, University of Nottingham, Sutton Bonington, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0091717PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3954733PMC
December 2014

Multiple groups of endogenous epsilon-like retroviruses conserved across primates.

J Virol 2014 Nov 20;88(21):12464-71. Epub 2014 Aug 20.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire, United Kingdom

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http://dx.doi.org/10.1128/JVI.00966-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248910PMC
November 2014

Homopolymer tract organization in the human malarial parasite Plasmodium falciparum and related Apicomplexan parasites.

BMC Genomics 2014 Oct 3;15:848. Epub 2014 Oct 3.

Institute for Science and Technology in Medicine, Keele University, Stoke-on-Trent ST5 5BG, Staffordshire, UK.

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http://dx.doi.org/10.1186/1471-2164-15-848DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4194402PMC
October 2014

The EFEMP1 gene: a frequent target for epigenetic silencing in multiple human pituitary adenoma subtypes.

Neuroendocrinology 2013 6;98(3):200-11. Epub 2013 Nov 6.

Institute of Science and Technology in Medicine, Keele University School of Medicine, Stoke-on-Trent, UK.

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http://dx.doi.org/10.1159/000355624DOI Listing
August 2014

A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome.

Front Genet 2014 25;5:190. Epub 2014 Jun 25.

Advanced Data Analysis Centre, University of Nottingham Leicestershire, UK ; School of Veterinary Medicine and Science, University of Nottingham Leicestershire, UK.

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http://dx.doi.org/10.3389/fgene.2014.00190DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4070175PMC
July 2014

Characterisation of the horse transcriptome from immunologically active tissues.

PeerJ 2014 6;2:e382. Epub 2014 May 6.

Advanced Data Analysis Centre, University of Nottingham, Sutton Bonington Campus , Loughborough , Leicestershire , UK ; School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus , Loughborough , Leicestershire , UK.

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http://dx.doi.org/10.7717/peerj.382DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4017814PMC
May 2014

Identifying the cellular targets of drug action in the central nervous system following corticosteroid therapy.

ACS Chem Neurosci 2014 Jan 7;5(1):51-63. Epub 2013 Nov 7.

Institute for Science and Technology in Medicine, School of Medicine, Keele University , David Weatherall building, Keele, Staffordshire ST5 5BG, United Kingdom.

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http://dx.doi.org/10.1021/cn400167nDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3894723PMC
January 2014

Bioinformatic perspectives in the neuronal ceroid lipofuscinoses.

Biochim Biophys Acta 2013 Nov 26;1832(11):1831-41. Epub 2012 Dec 26.

Institute for Inherited Metabolic Disorders, First Faculty of Medicine, Charles University in Prague, 120 00 Prague, Czech Republic.

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http://dx.doi.org/10.1016/j.bbadis.2012.12.010DOI Listing
November 2013

Epigenome-wide profiling identifies significant differences in DNA methylation between matched-pairs of T- and B-lymphocytes from healthy individuals.

Epigenetics 2013 Nov 4;8(11):1188-97. Epub 2013 Sep 4.

Institute for Science and Technology in Medicine; Keele University; Guy Hilton Research Centre; Staffordshire, UK.

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http://dx.doi.org/10.4161/epi.26265DOI Listing
November 2013

Characterisation of a group of endogenous gammaretroviruses in the canine genome.

Vet J 2013 Apr 27;196(1):28-33. Epub 2012 Sep 27.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Leicestershire LE12 5RD, UK.

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https://linkinghub.elsevier.com/retrieve/pii/S10900233120035
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http://dx.doi.org/10.1016/j.tvjl.2012.08.011DOI Listing
April 2013

Combined influence of gene-specific cord blood methylation and maternal smoking habit on birth weight.

Epigenomics 2013 Feb;5(1):37-49

Institute of Science & Technology in Medicine, Keele University School of Medicine, Stoke-on-Trent, Staffordshire, UK.

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http://dx.doi.org/10.2217/epi.12.72DOI Listing
February 2013

Antiepileptic drugs and the fetal epigenome.

Epilepsia 2013 Jan 27;54(1):e16-9. Epub 2012 Sep 27.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington, Leicestershire, United Kingdom.

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http://dx.doi.org/10.1111/j.1528-1167.2012.03673.xDOI Listing
January 2013

Synaptic scaffold evolution generated components of vertebrate cognitive complexity.

Nat Neurosci 2013 Jan 2;16(1):16-24. Epub 2012 Dec 2.

Genes to Cognition Programme, Centre for Clinical Brain Sciences and Centre for Neuroregeneration, The University of Edinburgh, Edinburgh, UK.

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http://dx.doi.org/10.1038/nn.3276DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4131247PMC
January 2013

Quantitative, genome-wide analysis of the DNA methylome in sporadic pituitary adenomas.

Endocr Relat Cancer 2012 Dec 19;19(6):805-16. Epub 2012 Nov 19.

Institute of Science and Technology in Medicine, Keele University School of Medicine, Stoke-on-Trent, Staffordshire ST4 7QB, UK.

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http://dx.doi.org/10.1530/ERC-12-0251DOI Listing
December 2012

Evolution of synapse complexity and diversity.

Annu Rev Neurosci 2012 ;35:111-31

School of Veterinary Medicine and Science, University of Nottingham, Leicestershire LE12 5RD, United Kingdom.

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http://dx.doi.org/10.1146/annurev-neuro-062111-150433DOI Listing
November 2012

Characterisation of retroviruses in the horse genome and their transcriptional activity via transcriptome sequencing.

Virology 2012 Nov 4;433(1):55-63. Epub 2012 Aug 4.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, United Kingdom.

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http://dx.doi.org/10.1016/j.virol.2012.07.010DOI Listing
November 2012

Comparison of clustering methods for investigation of genome-wide methylation array data.

Front Genet 2011 7;2:88. Epub 2011 Dec 7.

School of Veterinary Medicine and Science, University of Nottingham Nottingham, UK.

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http://dx.doi.org/10.3389/fgene.2011.00088DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268382PMC
October 2012

Identification of DNA methylation biomarkers from Infinium arrays.

Front Genet 2012 25;3:161. Epub 2012 Aug 25.

School of Veterinary Medicine and Science, University of Nottingham Loughborough, UK.

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http://dx.doi.org/10.3389/fgene.2012.00161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3427494PMC
October 2012

Make way for the 'next generation': application and prospects for genome-wide, epigenome-specific technologies in endocrine research.

J Mol Endocrinol 2012 Aug 29;49(1):R19-27. Epub 2012 May 29.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington Campus, College Road, Leicestershire LE12 5RD, UK.

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http://dx.doi.org/10.1530/JME-12-0045DOI Listing
August 2012

Adaptive evolution of Toll-like receptor 5 in domesticated mammals.

BMC Evol Biol 2012 Jul 24;12:122. Epub 2012 Jul 24.

School of Veterinary Medicine and Science, University of Nottingham, Sutton Bonington LE12 5RD, UK.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3483281PMC
http://dx.doi.org/10.1186/1471-2148-12-122DOI Listing
July 2012

Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans.

Epigenetics 2011 Jan 1;6(1):86-94. Epub 2011 Jan 1.

Institute of Science and Technology in Medicine, Keele University School of Medicine, University Hospital of North Staffordshire; Stoke-on-Trent, Staffordshire, UK.

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http://dx.doi.org/10.4161/epi.6.1.13392DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3052917PMC
January 2011

The Multiple Sclerosis Severity Score: associations with MC1R single nucleotide polymorphisms and host response to ultraviolet radiation.

Mult Scler 2010 Sep 29;16(9):1109-16. Epub 2010 Jul 29.

Keele Multiple Sclerosis Research Group, Department of Neurology, University Hospital of North Staffordshire, Stoke-on-Trent, UK.

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http://dx.doi.org/10.1177/1352458510373784DOI Listing
September 2010

Hsp-90 and the biology of nematodes.

BMC Evol Biol 2009 Oct 22;9:254. Epub 2009 Oct 22.

Parasitology Group, Institute of Comparative Medicine, School of Veterinary Medicine, University of Glasgow, Bearsden Road, Glasgow G61 1QH, UK.

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http://dx.doi.org/10.1186/1471-2148-9-254DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771018PMC
October 2009

LINE-1 DNA methylation is inversely correlated with cord plasma homocysteine in man: a preliminary study.

Epigenetics 2009 Aug 18;4(6):394-8. Epub 2009 Aug 18.

Institute of Science and Technology in Medicine, Keele University Medical School, University Hospital of North Staffordshire, Stoke-on-Trent, Staffordshire, UK.

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http://dx.doi.org/10.4161/epi.4.6.9766DOI Listing
August 2009

Control of gene expression in Plasmodium falciparum - ten years on.

Mol Biochem Parasitol 2009 Mar 6;164(1):9-25. Epub 2008 Dec 6.

Institute for Science and Technology in Medicine, Keele University, Staffordshire ST5 5BG, United Kingdom.

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http://dx.doi.org/10.1016/j.molbiopara.2008.11.010DOI Listing
March 2009

Inferring function from homology.

Authors:
Richard D Emes

Methods Mol Biol 2008 ;453:149-68

Department of Biology, University College London, London, United Kingdom.

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http://dx.doi.org/10.1007/978-1-60327-429-6_6DOI Listing
October 2008

Evolutionary expansion and anatomical specialization of synapse proteome complexity.

Nat Neurosci 2008 Jul 8;11(7):799-806. Epub 2008 Jun 8.

Institute for Science and Technology in Medicine, Keele University, Thornburrow Drive, Hartshill, Stoke-on-Trent ST4 7QB, UK.

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http://dx.doi.org/10.1038/nn.2135DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3624047PMC
July 2008

Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei.

PLoS One 2008 May 28;3(5):e2295. Epub 2008 May 28.

Institute for Science and Technology in Medicine, Keele University, Stoke-on-Trent, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0002295PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2386149PMC
May 2008

Sexual selection and the adaptive evolution of mammalian ejaculate proteins.

Mol Biol Evol 2008 Jan 20;25(1):207-19. Epub 2007 Nov 20.

Mammalian Behaviour and Evolution Group, Faculty of Veterinary Science, University of Liverpool, Liverpool, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msm242DOI Listing
January 2008

Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes.

BMC Neurosci 2008 Jan 15;9. Epub 2008 Jan 15.

Genes to Cognition Program, Wellcome Trust Sanger Institute, Cambridge, UK.

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http://dx.doi.org/10.1186/1471-2202-9-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2257970PMC
January 2008

Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus.

BMC Evol Biol 2005 Jul 14;5:40. Epub 2005 Jul 14.

Department of Biological Sciences, Butler University, 4600 Sunset Ave., Indianapolis, Indiana 46208, USA.

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http://dx.doi.org/10.1186/1471-2148-5-40DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1187883PMC
July 2005

Comparative evolutionary genomics of androgen-binding protein genes.

Genome Res 2004 Aug 15;14(8):1516-29. Epub 2004 Jul 15.

MRC Functional Genetics Unit, Department of Human Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, United Kingdom.

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http://dx.doi.org/10.1101/gr.2540304DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC509260PMC
August 2004

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

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http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents.

Genome Res 2004 Apr;14(4):591-602

MRC Functional Genetics Unit, Department of Human Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK.

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http://www.genome.org/cgi/doi/10.1101/gr.1940604
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http://dx.doi.org/10.1101/gr.1940604DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC383303PMC
April 2004

Comparison of the genomes of human and mouse lays the foundation of genome zoology.

Hum Mol Genet 2003 Apr;12(7):701-9

MRC Functional Genetics Unit, Department of Human Anatomy and Genetics, University of Oxford, South Parks Road, Oxford OX1 3QX, UK.

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http://dx.doi.org/10.1093/hmg/ddg078DOI Listing
April 2003

Initial sequencing and comparative analysis of the mouse genome.

Authors:
Robert H Waterston Kerstin Lindblad-Toh Ewan Birney Jane Rogers Josep F Abril Pankaj Agarwal Richa Agarwala Rachel Ainscough Marina Alexandersson Peter An Stylianos E Antonarakis John Attwood Robert Baertsch Jonathon Bailey Karen Barlow Stephan Beck Eric Berry Bruce Birren Toby Bloom Peer Bork Marc Botcherby Nicolas Bray Michael R Brent Daniel G Brown Stephen D Brown Carol Bult John Burton Jonathan Butler Robert D Campbell Piero Carninci Simon Cawley Francesca Chiaromonte Asif T Chinwalla Deanna M Church Michele Clamp Christopher Clee Francis S Collins Lisa L Cook Richard R Copley Alan Coulson Olivier Couronne James Cuff Val Curwen Tim Cutts Mark Daly Robert David Joy Davies Kimberly D Delehaunty Justin Deri Emmanouil T Dermitzakis Colin Dewey Nicholas J Dickens Mark Diekhans Sheila Dodge Inna Dubchak Diane M Dunn Sean R Eddy Laura Elnitski Richard D Emes Pallavi Eswara Eduardo Eyras Adam Felsenfeld Ginger A Fewell Paul Flicek Karen Foley Wayne N Frankel Lucinda A Fulton Robert S Fulton Terrence S Furey Diane Gage Richard A Gibbs Gustavo Glusman Sante Gnerre Nick Goldman Leo Goodstadt Darren Grafham Tina A Graves Eric D Green Simon Gregory Roderic Guigó Mark Guyer Ross C Hardison David Haussler Yoshihide Hayashizaki LaDeana W Hillier Angela Hinrichs Wratko Hlavina Timothy Holzer Fan Hsu Axin Hua Tim Hubbard Adrienne Hunt Ian Jackson David B Jaffe L Steven Johnson Matthew Jones Thomas A Jones Ann Joy Michael Kamal Elinor K Karlsson Donna Karolchik Arkadiusz Kasprzyk Jun Kawai Evan Keibler Cristyn Kells W James Kent Andrew Kirby Diana L Kolbe Ian Korf Raju S Kucherlapati Edward J Kulbokas David Kulp Tom Landers J P Leger Steven Leonard Ivica Letunic Rosie Levine Jia Li Ming Li Christine Lloyd Susan Lucas Bin Ma Donna R Maglott Elaine R Mardis Lucy Matthews Evan Mauceli John H Mayer Megan McCarthy W Richard McCombie Stuart McLaren Kirsten McLay John D McPherson Jim Meldrim Beverley Meredith Jill P Mesirov Webb Miller Tracie L Miner Emmanuel Mongin Kate T Montgomery Michael Morgan Richard Mott James C Mullikin Donna M Muzny William E Nash Joanne O Nelson Michael N Nhan Robert Nicol Zemin Ning Chad Nusbaum Michael J O'Connor Yasushi Okazaki Karen Oliver Emma Overton-Larty Lior Pachter Genís Parra Kymberlie H Pepin Jane Peterson Pavel Pevzner Robert Plumb Craig S Pohl Alex Poliakov Tracy C Ponce Chris P Ponting Simon Potter Michael Quail Alexandre Reymond Bruce A Roe Krishna M Roskin Edward M Rubin Alistair G Rust Ralph Santos Victor Sapojnikov Brian Schultz Jörg Schultz Matthias S Schwartz Scott Schwartz Carol Scott Steven Seaman Steve Searle Ted Sharpe Andrew Sheridan Ratna Shownkeen Sarah Sims Jonathan B Singer Guy Slater Arian Smit Douglas R Smith Brian Spencer Arne Stabenau Nicole Stange-Thomann Charles Sugnet Mikita Suyama Glenn Tesler Johanna Thompson David Torrents Evanne Trevaskis John Tromp Catherine Ucla Abel Ureta-Vidal Jade P Vinson Andrew C Von Niederhausern Claire M Wade Melanie Wall Ryan J Weber Robert B Weiss Michael C Wendl Anthony P West Kris Wetterstrand Raymond Wheeler Simon Whelan Jamey Wierzbowski David Willey Sophie Williams Richard K Wilson Eitan Winter Kim C Worley Dudley Wyman Shan Yang Shiaw-Pyng Yang Evgeny M Zdobnov Michael C Zody Eric S Lander

Nature 2002 Dec;420(6915):520-62

Genome Sequencing Center, Washington University School of Medicine, Campus Box 8501, 4444 Forest Park Avenue, St Louis, Missouri 63108, USA.

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http://dx.doi.org/10.1038/nature01262DOI Listing
December 2002