Publications by authors named "Rex L Chisholm"

60Publications

Genomic Medicine Year in Review: 2020.

Authors:
Teri A Manolio Carol J Bult Rex L Chisholm Patricia A Deverka Geoffrey S Ginsburg Madison Goldrich Gail P Jarvik George A Mensah Mary V Relling Dan M Roden Robb Rowley Cecelia Tamburro Marc S Williams Eric D Green

Am J Hum Genet 2020 12;107(6):1007-1010

National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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December 2020

Genomic Medicine Year in Review: 2019.

Authors:
Teri A Manolio Carol J Bult Rex L Chisholm Patricia A Deverka Geoffrey S Ginsburg Gail P Jarvik Howard L McLeod George A Mensah Mary V Relling Dan M Roden Robb Rowley Cecelia Tamburro Marc S Williams Eric D Green

Am J Hum Genet 2019 12 5;105(6):1072-1075. Epub 2019 Dec 5.

National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.

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December 2019

A Polygenic and Phenotypic Risk Prediction for Polycystic Ovary Syndrome Evaluated by Phenome-Wide Association Studies.

Authors:
Yoonjung Yoonie Joo Ky'Era Actkins Jennifer A Pacheco Anna O Basile Robert Carroll David R Crosslin Felix Day Joshua C Denny Digna R Velez Edwards Hakon Hakonarson John B Harley Scott J Hebbring Kevin Ho Gail P Jarvik Michelle Jones Tugce Karaderi Frank D Mentch Cindy Meun Bahram Namjou Sarah Pendergrass Marylyn D Ritchie Ian B Stanaway Margrit Urbanek Theresa L Walunas Maureen Smith Rex L Chisholm Abel N Kho Lea Davis M Geoffrey Hayes

J Clin Endocrinol Metab 2020 Jun;105(6)

Division of Endocrinology, Metabolism, and Molecular Medicine, Department of Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois.

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June 2020

dictyBase and the Dicty Stock Center (version 2.0) - a progress report.

Authors:
Petra Fey Robert J Dodson Siddhartha Basu Eric C Hartline Rex L Chisholm

Int J Dev Biol 2019 ;63(8-9-10):563-572

Northwestern University, Chicago, IL, USA.

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July 2020

Opportunities, resources, and techniques for implementing genomics in clinical care.

Authors:
Teri A Manolio Robb Rowley Marc S Williams Dan Roden Geoffrey S Ginsburg Carol Bult Rex L Chisholm Patricia A Deverka Howard L McLeod George A Mensah Mary V Relling Laura Lyman Rodriguez Cecelia Tamburro Eric D Green

Lancet 2019 Aug 5;394(10197):511-520. Epub 2019 Aug 5.

National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA.

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August 2019

An ancillary genomics system to support the return of pharmacogenomic results.

Authors:
Luke V Rasmussen Maureen E Smith Federico Almaraz Stephen D Persell Laura J Rasmussen-Torvik Jennifer A Pacheco Rex L Chisholm Carl Christensen Timothy M Herr Firas H Wehbe Justin B Starren

J Am Med Inform Assoc 2019 04;26(4):306-310

Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, IL.

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April 2019

Research Directions in the Clinical Implementation of Pharmacogenomics: An Overview of US Programs and Projects.

Authors:
Simona Volpi Carol J Bult Rex L Chisholm Patricia A Deverka Geoffrey S Ginsburg Howard J Jacob Melpomeni Kasapi Howard L McLeod Dan M Roden Marc S Williams Eric D Green Laura Lyman Rodriguez Samuel Aronson Larisa H Cavallari Joshua C Denny Lynn G Dressler Julie A Johnson Teri E Klein J Steven Leeder Micheline Piquette-Miller Minoli Perera Laura J Rasmussen-Torvik Heidi L Rehm Marylyn D Ritchie Todd C Skaar Nikhil Wagle Richard Weinshilboum Kristin W Weitzel Robert Wildin John Wilson Teri A Manolio Mary V Relling

Clin Pharmacol Ther 2018 05 30;103(5):778-786. Epub 2018 Mar 30.

Pharmaceutical Sciences Department, St. Jude Children's Research Hospital, Memphis, Tennessee, USA.

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May 2018

Bedside Back to Bench: Building Bridges between Basic and Clinical Genomic Research.

Authors:
Teri A Manolio Douglas M Fowler Lea M Starita Melissa A Haendel Daniel G MacArthur Leslie G Biesecker Elizabeth Worthey Rex L Chisholm Eric D Green Howard J Jacob Howard L McLeod Dan Roden Laura Lyman Rodriguez Marc S Williams Gregory M Cooper Nancy J Cox Gail E Herman Stephen Kingsmore Cecilia Lo Cathleen Lutz Calum A MacRae Robert L Nussbaum Jose M Ordovas Erin M Ramos Peter N Robinson Wendy S Rubinstein Christine Seidman Barbara E Stranger Haoyi Wang Monte Westerfield Carol Bult

Cell 2017 03;169(1):6-12

The Jackson Laboratory for Mammalian Genetics, Bar Harbor, ME 04609, USA.

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March 2017

Apolipoprotein L1 Variants and Blood Pressure Traits in African Americans.

Authors:
Girish N Nadkarni Geneviève Galarneau Stephen B Ellis Rajiv Nadukuru Jinglan Zhang Stuart A Scott Claudia Schurmann Rongling Li Laura J Rasmussen-Torvik Abel N Kho M Geoffrey Hayes Jennifer A Pacheco Teri A Manolio Rex L Chisholm Dan M Roden Joshua C Denny Eimear E Kenny Erwin P Bottinger

J Am Coll Cardiol 2017 Mar;69(12):1564-1574

Charles Bronfman Institute of Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, New York. Electronic address:

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March 2017

Genome-wide study of resistant hypertension identified from electronic health records.

Authors:
Logan Dumitrescu Marylyn D Ritchie Joshua C Denny Nihal M El Rouby Caitrin W McDonough Yuki Bradford Andrea H Ramirez Suzette J Bielinski Melissa A Basford High Seng Chai Peggy Peissig David Carrell Jyotishman Pathak Luke V Rasmussen Xiaoming Wang Jennifer A Pacheco Abel N Kho M Geoffrey Hayes Martha Matsumoto Maureen E Smith Rongling Li Rhonda M Cooper-DeHoff Iftikhar J Kullo Christopher G Chute Rex L Chisholm Gail P Jarvik Eric B Larson David Carey Catherine A McCarty Marc S Williams Dan M Roden Erwin Bottinger Julie A Johnson Mariza de Andrade Dana C Crawford

PLoS One 2017 21;12(2):e0171745. Epub 2017 Feb 21.

Epidemiology and Biostatistics, Institute for Computational Biology, Case Western Reserve University, Cleveland, Ohio, United States of America.

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August 2017

The phenotypic legacy of admixture between modern humans and Neandertals.

Authors:
Corinne N Simonti Benjamin Vernot Lisa Bastarache Erwin Bottinger David S Carrell Rex L Chisholm David R Crosslin Scott J Hebbring Gail P Jarvik Iftikhar J Kullo Rongling Li Jyotishman Pathak Marylyn D Ritchie Dan M Roden Shefali S Verma Gerard Tromp Jeffrey D Prato William S Bush Joshua M Akey Joshua C Denny John A Capra

Science 2016 Feb;351(6274):737-41

Vanderbilt Genetics Institute, Vanderbilt University, Nashville, TN, USA. Department of Biomedical Informatics, Vanderbilt University, Nashville, TN, USA. Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA. Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, USA.

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February 2016

Association of Arrhythmia-Related Genetic Variants With Phenotypes Documented in Electronic Medical Records.

Authors:
Sara L Van Driest Quinn S Wells Sarah Stallings William S Bush Adam Gordon Deborah A Nickerson Jerry H Kim David R Crosslin Gail P Jarvik David S Carrell James D Ralston Eric B Larson Suzette J Bielinski Janet E Olson Zi Ye Iftikhar J Kullo Noura S Abul-Husn Stuart A Scott Erwin Bottinger Berta Almoguera John Connolly Rosetta Chiavacci Hakon Hakonarson Laura J Rasmussen-Torvik Vivian Pan Stephen D Persell Maureen Smith Rex L Chisholm Terrie E Kitchner Max M He Murray H Brilliant John R Wallace Kimberly F Doheny M Benjamin Shoemaker Rongling Li Teri A Manolio Thomas E Callis Daniela Macaya Marc S Williams David Carey Jamie D Kapplinger Michael J Ackerman Marylyn D Ritchie Joshua C Denny Dan M Roden

JAMA 2016 Jan;315(1):47-57

Vanderbilt University Medical Center, Nashville, Tennessee.

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January 2016

Data Safe Havens in health research and healthcare.

Authors:
Paul R Burton Madeleine J Murtagh Andy Boyd James B Williams Edward S Dove Susan E Wallace Anne-Marie Tassé Julian Little Rex L Chisholm Amadou Gaye Kristian Hveem Anthony J Brookes Pat Goodwin Jon Fistein Martin Bobrow Bartha M Knoppers

Bioinformatics 2015 Oct 25;31(20):3241-8. Epub 2015 Jun 25.

Public Population Project in Genomics and Society (PG), Montreal, QC H3A 0G1, Canada, Centre of Genomics and Policy, McGill University, Montreal, QC H3A 0G1, Canada.

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October 2015

dictyBase 2015: Expanding data and annotations in a new software environment.

Authors:
Siddhartha Basu Petra Fey David Jimenez-Morales Robert J Dodson Rex L Chisholm

Genesis 2015 Aug 8;53(8):523-534. Epub 2015 Jul 8.

dictyBase, Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, 750 N. Lake Shore Drive, Chicago, IL 60611, USA.

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August 2015

Global implementation of genomic medicine: We are not alone.

Authors:
Teri A Manolio Marc Abramowicz Fahd Al-Mulla Warwick Anderson Rudi Balling Adam C Berger Steven Bleyl Aravinda Chakravarti Wasun Chantratita Rex L Chisholm Vajira H W Dissanayake Michael Dunn Victor J Dzau Bok-Ghee Han Tim Hubbard Anne Kolbe Bruce Korf Michiaki Kubo Paul Lasko Erkki Leego Surakameth Mahasirimongkol Partha P Majumdar Gert Matthijs Howard L McLeod Andres Metspalu Pierre Meulien Satoru Miyano Yaakov Naparstek P Pearl O'Rourke George P Patrinos Heidi L Rehm Mary V Relling Gad Rennert Laura Lyman Rodriguez Dan M Roden Alan R Shuldiner Sukdeb Sinha Patrick Tan Mats Ulfendahl Robyn Ward Marc S Williams John E L Wong Eric D Green Geoffrey S Ginsburg

Sci Transl Med 2015 Jun;7(290):290ps13

Center for Applied Genomics and Precision Medicine, Duke University, Durham, NC 27710, USA.

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June 2015

Replication of Associations with Electrocardio-graphic Traits in African Americans from Clinical and Epidemiologic Studies.

Authors:
Janina M Jeff Kristin Brown-Gentry Robert Goodloe Marylyn D Ritchie Joshua C Denny Abel N Kho Loren L Armstrong Bob McClellan Ping Mayo Melissa Allen Hailing Jin Niloufar B Gillani Nathalie Schnetz-Boutaud Holli H Dilks Melissa A Basford Jennifer A Pacheco Gail P Jarvik Rex L Chisholm Dan M Roden M Geoffrey Hayes Dana C Crawford

Evol Comput Mach Learn Data Min Bioinform 2014;2014:939-951

University of Washington Medical Center, Seattle, WA 98195, USA.

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January 2014

Genetic variants associated with serum thyroid stimulating hormone (TSH) levels in European Americans and African Americans from the eMERGE Network.

Authors:
Jennifer R Malinowski Joshua C Denny Suzette J Bielinski Melissa A Basford Yuki Bradford Peggy L Peissig David Carrell David R Crosslin Jyotishman Pathak Luke Rasmussen Jennifer Pacheco Abel Kho Katherine M Newton Rongling Li Iftikhar J Kullo Christopher G Chute Rex L Chisholm Gail P Jarvik Eric B Larson Catherine A McCarty Daniel R Masys Dan M Roden Mariza de Andrade Marylyn D Ritchie Dana C Crawford

PLoS One 2014 1;9(12):e111301. Epub 2014 Dec 1.

Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, United States of America; Center for Human Genetics Research, Vanderbilt University, Nashville, TN, United States of America.

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February 2016

Characterizing genetic variants for clinical action.

Authors:
Erin M Ramos Corina Din-Lovinescu Jonathan S Berg Lisa D Brooks Audrey Duncanson Michael Dunn Peter Good Tim J P Hubbard Gail P Jarvik Christopher O'Donnell Stephen T Sherry Naomi Aronson Leslie G Biesecker Bruce Blumberg Ned Calonge Helen M Colhoun Robert S Epstein Paul Flicek Erynn S Gordon Eric D Green Robert C Green Matthew Hurles Kensaku Kawamoto William Knaus David H Ledbetter Howard P Levy Elaine Lyon Donna Maglott Howard L McLeod Nazneen Rahman Gurvaneet Randhawa Catherine Wicklund Teri A Manolio Rex L Chisholm Marc S Williams

Am J Med Genet C Semin Med Genet 2014 Mar 13;166C(1):93-104. Epub 2014 Mar 13.

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March 2014

Admixture mapping and subsequent fine-mapping suggests a biologically relevant and novel association on chromosome 11 for type 2 diabetes in African Americans.

Authors:
Janina M Jeff Loren L Armstrong Marylyn D Ritchie Joshua C Denny Abel N Kho Melissa A Basford Wendy A Wolf Jennifer A Pacheco Rongling Li Rex L Chisholm Dan M Roden M Geoffrey Hayes Dana C Crawford

PLoS One 2014 3;9(3):e86931. Epub 2014 Mar 3.

Center for Human Genetics Research, Vanderbilt University, Nashville, Tennessee, United States of America.

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January 2015

Systematic comparison of phenome-wide association study of electronic medical record data and genome-wide association study data.

Authors:
Joshua C Denny Lisa Bastarache Marylyn D Ritchie Robert J Carroll Raquel Zink Jonathan D Mosley Julie R Field Jill M Pulley Andrea H Ramirez Erica Bowton Melissa A Basford David S Carrell Peggy L Peissig Abel N Kho Jennifer A Pacheco Luke V Rasmussen David R Crosslin Paul K Crane Jyotishman Pathak Suzette J Bielinski Sarah A Pendergrass Hua Xu Lucia A Hindorff Rongling Li Teri A Manolio Christopher G Chute Rex L Chisholm Eric B Larson Gail P Jarvik Murray H Brilliant Catherine A McCarty Iftikhar J Kullo Jonathan L Haines Dana C Crawford Daniel R Masys Dan M Roden

Nat Biotechnol 2013 Dec;31(12):1102-10

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December 2013

A genome- and phenome-wide association study to identify genetic variants influencing platelet count and volume and their pleiotropic effects.

Authors:
Khader Shameer Joshua C Denny Keyue Ding Hayan Jouni David R Crosslin Mariza de Andrade Christopher G Chute Peggy Peissig Jennifer A Pacheco Rongling Li Lisa Bastarache Abel N Kho Marylyn D Ritchie Daniel R Masys Rex L Chisholm Eric B Larson Catherine A McCarty Dan M Roden Gail P Jarvik Iftikhar J Kullo

Hum Genet 2014 Jan 12;133(1):95-109. Epub 2013 Sep 12.

Division of Cardiovascular Diseases, Mayo Clinic, 200 First Street SW, Rochester, MN, 55905, USA.

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January 2014

At the Interface between Medical Informatics and Personalized Medicine: The eMERGE Network Experience.

Authors:
Rex L Chisholm

Healthc Inform Res 2013 Jun;19(2):67-8

Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.

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June 2013

The Electronic Medical Records and Genomics (eMERGE) Network: past, present, and future.

Authors:
Omri Gottesman Helena Kuivaniemi Gerard Tromp W Andrew Faucett Rongling Li Teri A Manolio Saskia C Sanderson Joseph Kannry Randi Zinberg Melissa A Basford Murray Brilliant David J Carey Rex L Chisholm Christopher G Chute John J Connolly David Crosslin Joshua C Denny Carlos J Gallego Jonathan L Haines Hakon Hakonarson John Harley Gail P Jarvik Isaac Kohane Iftikhar J Kullo Eric B Larson Catherine McCarty Marylyn D Ritchie Dan M Roden Maureen E Smith Erwin P Böttinger Marc S Williams

Genet Med 2013 Oct 6;15(10):761-71. Epub 2013 Jun 6.

Mount Sinai School of Medicine, New York, New York, USA.

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October 2013

A P3G generic access agreement for population genomic studies.

Authors:
Bartha Maria Knoppers Rex L Chisholm Jane Kaye David Cox Adrian Thorogood Paul Burton Anthony J Brookes Isabel Fortier Pat Goodwin Jennifer R Harris Kristian Hveem Alistair Kent Julian Little Peter H J Riegman Samuli Ripatti Ronald P Stolk

Nat Biotechnol 2013 May;31(5):384-5

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May 2013

Generalization of variants identified by genome-wide association studies for electrocardiographic traits in African Americans.

Authors:
Janina M Jeff Marylyn D Ritchie Joshua C Denny Abel N Kho Andrea H Ramirez David Crosslin Loren Armstrong Melissa A Basford Wendy A Wolf Jennifer A Pacheco Rex L Chisholm Dan M Roden M Geoffrey Hayes Dana C Crawford

Ann Hum Genet 2013 Jul 28;77(4):321-32. Epub 2013 Mar 28.

Center for Human Genetics Research, Vanderbilt University, Nashville, TN, USA.

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July 2013

One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012.

Authors:
Petra Fey Robert J Dodson Siddhartha Basu Rex L Chisholm

Methods Mol Biol 2013 ;983:59-92

dictyBase and the Dicty Stock Center, Center for Genetic Medicine, Northwestern University, Chicago, IL, USA.

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August 2013

Genome- and phenome-wide analyses of cardiac conduction identifies markers of arrhythmia risk.

Authors:
Marylyn D Ritchie Joshua C Denny Rebecca L Zuvich Dana C Crawford Jonathan S Schildcrout Lisa Bastarache Andrea H Ramirez Jonathan D Mosley Jill M Pulley Melissa A Basford Yuki Bradford Luke V Rasmussen Jyotishman Pathak Christopher G Chute Iftikhar J Kullo Catherine A McCarty Rex L Chisholm Abel N Kho Christopher S Carlson Eric B Larson Gail P Jarvik Nona Sotoodehnia Teri A Manolio Rongling Li Daniel R Masys Jonathan L Haines Dan M Roden

Circulation 2013 Apr 5;127(13):1377-85. Epub 2013 Mar 5.

Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA.

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April 2013

Implementing genomic medicine in the clinic: the future is here.

Authors:
Teri A Manolio Rex L Chisholm Brad Ozenberger Dan M Roden Marc S Williams Richard Wilson David Bick Erwin P Bottinger Murray H Brilliant Charis Eng Kelly A Frazer Bruce Korf David H Ledbetter James R Lupski Clay Marsh David Mrazek Michael F Murray Peter H O'Donnell Daniel J Rader Mary V Relling Alan R Shuldiner David Valle Richard Weinshilboum Eric D Green Geoffrey S Ginsburg

Genet Med 2013 Apr 10;15(4):258-67. Epub 2013 Jan 10.

National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.

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April 2013

DictyBase 2013: integrating multiple Dictyostelid species.

Authors:
Siddhartha Basu Petra Fey Yogesh Pandit Robert Dodson Warren A Kibbe Rex L Chisholm

Nucleic Acids Res 2013 Jan 20;41(Database issue):D676-83. Epub 2012 Nov 20.

Biomedical Informatics Center and Center for Genetic Medicine, Northwestern Univesity, Feinberg School of Medicine, 750 North Lake Shore Drive, Chicago, IL 60611, USA.

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January 2013

High density GWAS for LDL cholesterol in African Americans using electronic medical records reveals a strong protective variant in APOE.

Authors:
Laura J Rasmussen-Torvik Jennifer A Pacheco Russell A Wilke William K Thompson Marylyn D Ritchie Abel N Kho Arun Muthalagu M Geoff Hayes Loren L Armstrong Douglas A Scheftner John T Wilkins Rebecca L Zuvich David Crosslin Dan M Roden Joshua C Denny Gail P Jarvik Christopher S Carlson Iftikhar J Kullo Suzette J Bielinski Catherine A McCarty Rongling Li Teri A Manolio Dana C Crawford Rex L Chisholm

Clin Transl Sci 2012 Oct 23;5(5):394-9. Epub 2012 Aug 23.

Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, Illinois, USA.

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October 2012

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study.

Authors:
Abel N Kho M Geoffrey Hayes Laura Rasmussen-Torvik Jennifer A Pacheco William K Thompson Loren L Armstrong Joshua C Denny Peggy L Peissig Aaron W Miller Wei-Qi Wei Suzette J Bielinski Christopher G Chute Cynthia L Leibson Gail P Jarvik David R Crosslin Christopher S Carlson Katherine M Newton Wendy A Wolf Rex L Chisholm William L Lowe

J Am Med Inform Assoc 2012 Mar-Apr;19(2):212-8. Epub 2011 Nov 19.

Northwestern University, Chicago, Illinois, USA.

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May 2012

Variants near FOXE1 are associated with hypothyroidism and other thyroid conditions: using electronic medical records for genome- and phenome-wide studies.

Authors:
Joshua C Denny Dana C Crawford Marylyn D Ritchie Suzette J Bielinski Melissa A Basford Yuki Bradford High Seng Chai Lisa Bastarache Rebecca Zuvich Peggy Peissig David Carrell Andrea H Ramirez Jyotishman Pathak Russell A Wilke Luke Rasmussen Xiaoming Wang Jennifer A Pacheco Abel N Kho M Geoffrey Hayes Noah Weston Martha Matsumoto Peter A Kopp Katherine M Newton Gail P Jarvik Rongling Li Teri A Manolio Iftikhar J Kullo Christopher G Chute Rex L Chisholm Eric B Larson Catherine A McCarty Daniel R Masys Dan M Roden Mariza de Andrade

Am J Hum Genet 2011 Oct;89(4):529-42

Department of Biomedical Informatics, Vanderbilt University, Nashville, TN 37232, USA.

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October 2011

Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate.

Authors:
Iftikhar J Kullo Keyue Ding Khader Shameer Catherine A McCarty Gail P Jarvik Joshua C Denny Marylyn D Ritchie Zi Ye David R Crosslin Rex L Chisholm Teri A Manolio Christopher G Chute

Am J Hum Genet 2011 Jul 23;89(1):131-8. Epub 2011 Jun 23.

Division of Cardiovascular Diseases, Mayo Clinic, Rochester, MN 55905, USA.

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July 2011

Spliceosomal genes in the D. discoideum genome: a comparison with those in H. sapiens, D. melanogaster, A. thaliana and S. cerevisiae.

Authors:
Bing Yu Petra Fey Karen E Kestin-Pilcher Alexei Fedorov Ashwin Prakash Rex L Chisholm Jane Y Wu

Protein Cell 2011 May 12;2(5):395-409. Epub 2011 Jun 12.

Department of Molecular and Clinical Genetics, Royal Prince Alfred Hospital and Sydney Medical School (Central), the University of Sydney, Australia.

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May 2011

Electronic medical records for genetic research: results of the eMERGE consortium.

Authors:
Abel N Kho Jennifer A Pacheco Peggy L Peissig Luke Rasmussen Katherine M Newton Noah Weston Paul K Crane Jyotishman Pathak Christopher G Chute Suzette J Bielinski Iftikhar J Kullo Rongling Li Teri A Manolio Rex L Chisholm Joshua C Denny

Sci Transl Med 2011 Apr;3(79):79re1

Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.

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April 2011

Uncovering a role for the tail of the Dictyostelium discoideum SadA protein in cell-substrate adhesion.

Authors:
Anthony S Kowal Rex L Chisholm

Eukaryot Cell 2011 May 25;10(5):662-71. Epub 2011 Mar 25.

Integrated Graduate Program in the Life Sciences, Northwestern University, Chicago, IL 60611, USA.

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May 2011

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.

Authors:
Richard Sucgang Alan Kuo Xiangjun Tian William Salerno Anup Parikh Christa L Feasley Eileen Dalin Hank Tu Eryong Huang Kerrie Barry Erika Lindquist Harris Shapiro David Bruce Jeremy Schmutz Asaf Salamov Petra Fey Pascale Gaudet Christophe Anjard M Madan Babu Siddhartha Basu Yulia Bushmanova Hanke van der Wel Mariko Katoh-Kurasawa Christopher Dinh Pedro M Coutinho Tamao Saito Marek Elias Pauline Schaap Robert R Kay Bernard Henrissat Ludwig Eichinger Francisco Rivero Nicholas H Putnam Christopher M West William F Loomis Rex L Chisholm Gad Shaulsky Joan E Strassmann David C Queller Adam Kuspa Igor V Grigoriev

Genome Biol 2011 28;12(2):R20. Epub 2011 Feb 28.

Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA.

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February 2012

The eMERGE Network: a consortium of biorepositories linked to electronic medical records data for conducting genomic studies.

Authors:
Catherine A McCarty Rex L Chisholm Christopher G Chute Iftikhar J Kullo Gail P Jarvik Eric B Larson Rongling Li Daniel R Masys Marylyn D Ritchie Dan M Roden Jeffery P Struewing Wendy A Wolf

BMC Med Genomics 2011 Jan 26;4:13. Epub 2011 Jan 26.

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January 2011

Towards BioDBcore: a community-defined information specification for biological databases.

Authors:
Pascale Gaudet Amos Bairoch Dawn Field Susanna-Assunta Sansone Chris Taylor Teresa K Attwood Alex Bateman Judith A Blake Carol J Bult J Michael Cherry Rex L Chisholm Guy Cochrane Charles E Cook Janan T Eppig Michael Y Galperin Robert Gentleman Carole A Goble Takashi Gojobori John M Hancock Douglas G Howe Tadashi Imanishi Janet Kelso David Landsman Suzanna E Lewis Ilene Karsch Mizrachi Sandra Orchard B F Francis Ouellette Shoba Ranganathan Lorna Richardson Philippe Rocca-Serra Paul N Schofield Damian Smedley Christopher Southan Tin W Tan Tatiana Tatusova Patricia L Whetzel Owen White Chisato Yamasaki

Database (Oxford) 2011 4;2011:baq027. Epub 2011 Jan 4.

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April 2011

Towards BioDBcore: a community-defined information specification for biological databases.

Authors:
Pascale Gaudet Amos Bairoch Dawn Field Susanna-Assunta Sansone Chris Taylor Teresa K Attwood Alex Bateman Judith A Blake Carol J Bult J Michael Cherry Rex L Chisholm Guy Cochrane Charles E Cook Janan T Eppig Michael Y Galperin Robert Gentleman Carole A Goble Takashi Gojobori John M Hancock Douglas G Howe Tadashi Imanishi Janet Kelso David Landsman Suzanna E Lewis Ilene Karsch Mizrachi Sandra Orchard B F Francis Ouellette Shoba Ranganathan Lorna Richardson Philippe Rocca-Serra Paul N Schofield Damian Smedley Christopher Southan Tin Wee Tan Tatiana Tatusova Patricia L Whetzel Owen White Chisato Yamasaki

Nucleic Acids Res 2011 Jan 18;39(Database issue):D7-10. Epub 2010 Nov 18.

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January 2011

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa.

Authors:
Pascale Gaudet Petra Fey Siddhartha Basu Yulia A Bushmanova Robert Dodson Kerry A Sheppard Eric M Just Warren A Kibbe Rex L Chisholm

Nucleic Acids Res 2011 Jan 17;39(Database issue):D620-4. Epub 2010 Nov 17.

dictyBase, Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, 420 E Superior St, Chicago, IL 60611, USA.

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January 2011

Quality, quantity and harmony: the DataSHaPER approach to integrating data across bioclinical studies.

Authors:
Isabel Fortier Paul R Burton Paula J Robson Vincent Ferretti Julian Little Francois L'Heureux Mylène Deschênes Bartha M Knoppers Dany Doiron Joost C Keers Pamela Linksted Jennifer R Harris Geneviève Lachance Catherine Boileau Nancy L Pedersen Carol M Hamilton Kristian Hveem Marilyn J Borugian Richard P Gallagher John McLaughlin Louise Parker John D Potter John Gallacher Rudolf Kaaks Bette Liu Tim Sprosen Anne Vilain Susan A Atkinson Andrea Rengifo Robin Morton Andres Metspalu H Erich Wichmann Mark Tremblay Rex L Chisholm Andrés Garcia-Montero Hans Hillege Jan-Eric Litton Lyle J Palmer Markus Perola Bruce H R Wolffenbuttel Leena Peltonen Thomas J Hudson

Int J Epidemiol 2010 Oct 2;39(5):1383-93. Epub 2010 Sep 2.

Public Population Project in Genomics (P³G), Montreal, QC, Canada.

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October 2010

Nonmuscle myosin IIA with a GFP fused to the N-terminus of the regulatory light chain is regulated normally.

Authors:
Andras Kengyel Wendy A Wolf Rex L Chisholm James R Sellers

J Muscle Res Cell Motil 2010 Sep 14;31(3):163-70. Epub 2010 Aug 14.

Laboratory of Molecular Physiology, National Heart, Lung and Blood Institute, National Institutes of Health, Building 50, Room 3523, Bethesda, MD 20892, USA.

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September 2010

Prepublication data sharing.

Authors:
Ewan Birney Thomas J Hudson Eric D Green Chris Gunter Sean Eddy Jane Rogers Jennifer R Harris S Dusko Ehrlich Rolf Apweiler Christopher P Austin Lisa Berglund Martin Bobrow Chas Bountra Anthony J Brookes Anne Cambon-Thomsen Nigel P Carter Rex L Chisholm Jorge L Contreras Robert M Cooke William L Crosby Ken Dewar Richard Durbin Stephanie O M Dyke Joseph R Ecker Khaled El Emam Lars Feuk Stacey B Gabriel John Gallacher William M Gelbart Antoni Granell Francisco Guarner Tim Hubbard Scott A Jackson Jennifer L Jennings Yann Joly Steven M Jones Jane Kaye Karen L Kennedy Bartha Maria Knoppers Nikos C Kyrpides William W Lowrance Jingchu Luo John J MacKay Luis Martín-Rivera W Richard McCombie John D McPherson Linda Miller Webb Miller Don Moerman Vincent Mooser Cynthia C Morton James M Ostell B F Francis Ouellette Julian Parkhill Parminder S Raina Christopher Rawlings Steven E Scherer Stephen W Scherer Paul N Schofield Christoph W Sensen Victoria C Stodden Michael R Sussman Toshihiro Tanaka Janet Thornton Tatsuhiko Tsunoda David Valle Eero I Vuorio Neil M Walker Susan Wallace George Weinstock William B Whitman Kim C Worley Cathy Wu Jiayan Wu Jun Yu

Nature 2009 Sep;461(7261):168-70

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September 2009

Annotating the human genome with Disease Ontology.

Authors:
John D Osborne Jared Flatow Michelle Holko Simon M Lin Warren A Kibbe Lihua Julie Zhu Maria I Danila Gang Feng Rex L Chisholm

BMC Genomics 2009 Jul 7;10 Suppl 1:S6. Epub 2009 Jul 7.

Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.

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July 2009

dictyBase--a Dictyostelium bioinformatics resource update.

Authors:
Petra Fey Pascale Gaudet Tomaz Curk Blaz Zupan Eric M Just Siddhartha Basu Sohel N Merchant Yulia A Bushmanova Gad Shaulsky Warren A Kibbe Rex L Chisholm

Nucleic Acids Res 2009 Jan 30;37(Database issue):D515-9. Epub 2008 Oct 30.

dictyBase, Northwestern University Biomedical Informatics Center and Center for Genetic Medicine, Chicago, IL 60611, USA.

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January 2009

An anatomy ontology to represent biological knowledge in Dictyostelium discoideum.

Authors:
Pascale Gaudet Jeffery G Williams Petra Fey Rex L Chisholm

BMC Genomics 2008 Mar 18;9:130. Epub 2008 Mar 18.

dictyBase, Northwestern University, Center for Genetic Medicine, 676 N, St, Clair, Chicago, IL 60611, USA.

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March 2008

A general purpose method for extracting RNA from Dictyostelium cells.

Authors:
Karen E Pilcher Pascale Gaudet Petra Fey Anthony S Kowal Rex L Chisholm

Nat Protoc 2007 ;2(6):1329-32

dictyBase, Center for Genetic Medicine, Northwestern University, 676 North Saint Clair Street Suite 1260, Chicago, Illinois 60611, USA.

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August 2007

A reliable general purpose method for extracting genomic DNA from Dictyostelium cells.

Authors:
Karen E Pilcher Petra Fey Pascale Gaudet Anthony S Kowal Rex L Chisholm

Nat Protoc 2007 ;2(6):1325-8

dictyBase, Center for Genetic Medicine, Northwestern University, 676 North Saint Clair Street Suite 1260, Chicago, Illinois 60611, USA.

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August 2007

Transformation of Dictyostelium discoideum with plasmid DNA.

Authors:
Pascale Gaudet Karen E Pilcher Petra Fey Rex L Chisholm

Nat Protoc 2007 ;2(6):1317-24

dictyBase, Center for Genetic Medicine, Northwestern University, 676 North Saint Clair Street Suite 1260, Chicago, Illinois 60611, USA.

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August 2007

Protocols for growth and development of Dictyostelium discoideum.

Authors:
Petra Fey Anthony S Kowal Pascale Gaudet Karen E Pilcher Rex L Chisholm

Nat Protoc 2007 ;2(6):1307-16

dictyBase, Center for Genetic Medicine, Northwestern University, 676 North Saint Clair Street, Suite 1260, Chicago, Illinois 60611, USA.

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August 2007

Xanthusbase: adapting wikipedia principles to a model organism database.

Authors:
Bradley I Arshinoff Garret Suen Eric M Just Sohel M Merchant Warren A Kibbe Rex L Chisholm Roy D Welch

Nucleic Acids Res 2007 Jan 7;35(Database issue):D422-6. Epub 2006 Nov 7.

Department of Biology, Syracuse University, Syracuse, NY 13244, USA.

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January 2007

dictyBase and the Dicty Stock Center.

Authors:
Petra Fey Pascale Gaudet Karen E Pilcher Jakob Franke Rex L Chisholm

Methods Mol Biol 2006 ;346:51-74

dictyBase, Center for Genetic Medicine, Northwestern University, Chicago, IL, USA.

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October 2006

dictyBase, the model organism database for Dictyostelium discoideum.

Authors:
Rex L Chisholm Pascale Gaudet Eric M Just Karen E Pilcher Petra Fey Sohel N Merchant Warren A Kibbe

Nucleic Acids Res 2006 Jan;34(Database issue):D423-7

dictyBase, Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA.

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January 2006

Insights into morphogenesis from a simple developmental system.

Authors:
Rex L Chisholm Richard A Firtel

Nat Rev Mol Cell Biol 2004 Jul;5(7):531-41

Cell and Molecular Biology, Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Chicago, Illinois 60611, USA.

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July 2004

dictyBase: a new Dictyostelium discoideum genome database.

Authors:
Lisa Kreppel Petra Fey Pascale Gaudet Eric Just Warren A Kibbe Rex L Chisholm Alan R Kimmel

Nucleic Acids Res 2004 Jan;32(Database issue):D332-3

Laboratory of Cellular and Developmental Biology (50/3351), National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892-8028, USA.

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January 2004

SadA, a novel adhesion receptor in Dictyostelium.

Authors:
Petra Fey Stephen Stephens Margaret A Titus Rex L Chisholm

J Cell Biol 2002 Dec 23;159(6):1109-19. Epub 2002 Dec 23.

Department of Cell and Molecular Biology, Northwestern University Medical School, Chicago, IL 60611, USA.

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December 2002

Phosphorylation of the myosin regulatory light chain plays a role in motility and polarity during Dictyostelium chemotaxis.

Authors:
Hui Zhang Deborah Wessels Petra Fey Karla Daniels Rex L Chisholm David R Soll

J Cell Sci 2002 Apr;115(Pt 8):1733-47

Department of Biological Sciences, University of Iowa, Iowa City, Iowa 52242, USA.

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April 2002

Cytoplasmic dynein-associated structures move bidirectionally in vivo.

Authors:
Shuo Ma Rex L Chisholm

J Cell Sci 2002 Apr;115(Pt 7):1453-60

Department of Cell and Molecular Biology, Robert H. Lurie Comprehensive Cancer Center, and Center for Genetic Medicine, Northwestern University Medical School, Chicago, Illinois 60611, USA.

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April 2002

A fluorescent resonant energy transfer-based biosensor reveals transient and regional myosin light chain kinase activation in lamella and cleavage furrows.

Authors:
Teng-Leong Chew Wendy A Wolf Patricia J Gallagher Fumio Matsumura Rex L Chisholm

J Cell Biol 2002 Feb 28;156(3):543-53. Epub 2002 Jan 28.

Department of Cell and Molecular Biology, R.H. Lurie Comprehensive Cancer Center and Center for Genetic Medicine, Northwestern University Medical School, Chicago, IL 60611, USA.

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February 2002