Rene F Ketting

Rene F Ketting

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Rene F Ketting

Publications by authors named "Rene F Ketting"

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Maternal and zygotic gene regulatory effects of endogenous RNAi pathways.

PLoS Genet 2019 02 13;15(2):e1007784. Epub 2019 Feb 13.

Biology of Non-coding RNA Group, Institute of Molecular Biology, Ackermannweg 4, Mainz, Germany.

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http://dx.doi.org/10.1371/journal.pgen.1007784DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6391025PMC
February 2019

Function and Evolution of Nematode RNAi Pathways.

Noncoding RNA 2019 Jan 15;5(1). Epub 2019 Jan 15.

Institute of Molecular Biology, Ackermannweg 4, 55128 Mainz, Germany.

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http://www.mdpi.com/2311-553X/5/1/8
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http://dx.doi.org/10.3390/ncrna5010008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6468775PMC
January 2019

Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development.

Cell Rep 2018 07;24(1):1-10.e4

Oncode Institute and Division of Gene Regulation, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, the Netherlands. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S22111247183089
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http://dx.doi.org/10.1016/j.celrep.2018.06.003DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6047509PMC
July 2018

Trimming it short: PNLDC1 is required for piRNA maturation during mouse spermatogenesis.

EMBO Rep 2018 03 19;19(3). Epub 2018 Feb 19.

Institute of Molecular Biology, Biology of non-coding RNA, Mainz, Germany.

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http://dx.doi.org/10.15252/embr.201845824DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5836100PMC
March 2018

Characterization of genetic loss-of-function of Fus in zebrafish.

RNA Biol 2017 01 29;14(1):29-35. Epub 2016 Nov 29.

a Institute of Molecular Biology , Mainz , Germany.

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http://dx.doi.org/10.1080/15476286.2016.1256532DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5270537PMC
January 2017

Substrate requirements for let-7 function in the developing zebrafish embryo.

Nucleic Acids Res 2016 07 11;44(12):5993. Epub 2016 Mar 11.

The Hubrecht Laboratory, Centre for Biomedical Genetics, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1093/nar/gkw173DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4937305PMC
July 2016

Normal formation of a vertebrate body plan and loss of tissue maintenance in the absence of ezh2.

Sci Rep 2016 05 5;6:24658. Epub 2016 May 5.

Radboud University Medical Center, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands.

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http://dx.doi.org/10.1038/srep24658DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4857124PMC
May 2016

microRNA Biogenesis and Function : An overview.

Authors:
René F Ketting

Adv Exp Med Biol 2011 ;700:1-14

Hubrecht Institute-kNAW and University Medical Centre Utrecht, Uppsalalaan 8, 3584, CT Utrecht, the Netherlands,

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http://dx.doi.org/10.1007/978-1-4419-7823-3_1DOI Listing
April 2016

Maternal piRNAs Are Essential for Germline Development following De Novo Establishment of Endo-siRNAs in Caenorhabditis elegans.

Dev Cell 2015 Aug 13;34(4):448-56. Epub 2015 Aug 13.

Institute of Molecular Biology (IMB), Ackermannweg 4, 55128 Mainz, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2015.07.010DOI Listing
August 2015

Tupaia small RNAs provide insights into function and evolution of RNAi-based transposon defense in mammals.

RNA 2015 May 23;21(5):911-22. Epub 2015 Mar 23.

Institute of Anthropology, Johannes Gutenberg-University, Mainz, Rheinland-Pfalz 55128, Germany.

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http://dx.doi.org/10.1261/rna.048603.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408798PMC
May 2015

The evolutionary journey of Argonaute proteins.

Nat Struct Mol Biol 2014 Sep;21(9):743-53

Laboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, Wageningen, the Netherlands.

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http://dx.doi.org/10.1038/nsmb.2879DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691850PMC
September 2014

Isolation of zebrafish gonads for RNA isolation.

Methods Mol Biol 2014 ;1093:183-94

Ontario Cancer Institute, Princess Margaret Hospital, Toronto, ON, Canada.

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http://dx.doi.org/10.1007/978-1-62703-694-8_15DOI Listing
June 2014

Profiling of RNA modifications by multiplexed stable isotope labelling.

Chem Commun (Camb) 2014 Apr 24;50(26):3516-8. Epub 2014 Feb 24.

Institute of Pharmacy and Biochemistry, Johannes Gutenberg University, 5 Staudinger Weg, Mainz, D-55128, Germany.

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http://dx.doi.org/10.1039/c3cc49114eDOI Listing
April 2014

Is this mine? small RNAs help to decide.

Dev Cell 2013 Dec;27(6):599-601

Institute for Molecular Biology, Ackermannweg 4, D-55128 Mainz, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.devcel.2013.12.005DOI Listing
December 2013

PIWI-interacting RNAs: from generation to transgenerational epigenetics.

Nat Rev Genet 2013 Aug 25;14(8):523-34. Epub 2013 Jun 25.

Hubrecht Institute-KNAW and University Medical Centre Utrecht, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/nrg3495DOI Listing
August 2013

piRNA dynamics in divergent zebrafish strains reveal long-lasting maternal influence on zygotic piRNA profiles.

RNA 2013 Mar 18;19(3):345-56. Epub 2013 Jan 18.

Hubrecht Institute-KNAW and University Medical Centre Utrecht, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1261/rna.036400.112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3677245PMC
March 2013

Extremely stable Piwi-induced gene silencing in Caenorhabditis elegans.

EMBO J 2012 Aug 31;31(16):3422-30. Epub 2012 Jul 31.

Hubrecht Institute-KNAW and University Medical Centre Utrecht, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/emboj.2012.213DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3419935PMC
August 2012

MicroRNA biogenesis and function. An overview.

Authors:
René F Ketting

Adv Exp Med Biol 2010 ;700:1-14

Ketting-Hubrecht Institute-KNAW and University Medical Centre Utrecht, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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June 2011

RNAi genes pave their own way.

Genes Dev 2011 Mar;25(6):529-33

Hubrecht Institute-KNAW, University Medical Centre Utrecht, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1101/gad.2038611DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059828PMC
March 2011

The many faces of RNAi.

Authors:
René F Ketting

Dev Cell 2011 Feb;20(2):148-61

Hubrecht Institute-KNAW and University Medical Centre Utrecht, Utrecht, The Netherlands.

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http://dx.doi.org/10.1016/j.devcel.2011.01.012DOI Listing
February 2011

Hen1 is required for oocyte development and piRNA stability in zebrafish.

EMBO J 2010 Nov 21;29(21):3688-700. Epub 2010 Sep 21.

Hubrecht Institute-KNAW, University Medical Centre Utrecht, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/emboj.2010.233DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2982757PMC
November 2010

The role of small non-coding RNAs in genome stability and chromatin organization.

J Cell Sci 2010 Jun;123(Pt 11):1825-39

Hubrecht Institute-KNAW and University Medical Centre Utrecht, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://jcs.biologists.org/cgi/doi/10.1242/jcs.061713
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http://dx.doi.org/10.1242/jcs.061713DOI Listing
June 2010

MicroRNA-directed siRNA biogenesis in Caenorhabditis elegans.

PLoS Genet 2010 Apr 8;6(4):e1000903. Epub 2010 Apr 8.

Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences and University Medical Centre Utrecht, Utrecht, The Netherlands.

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http://dx.doi.org/10.1371/journal.pgen.1000903DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2851571PMC
April 2010

Dcr1 tracked down.

Dev Cell 2010 Jan;18(1):6-7

Hubrecht Institute-KNAW & University Medical Centre Utrecht, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1016/j.devcel.2010.01.001DOI Listing
January 2010

Generation and characterization of FMR1 knockout zebrafish.

PLoS One 2009 Nov 19;4(11):e7910. Epub 2009 Nov 19.

Hubrecht Institute, Royal Academy of Arts and Sciences and University Medical Center Utrecht, Utrecht, The Netherlands.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007910PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2774943PMC
November 2009

CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs.

Cell 2009 Oct;139(1):135-48

Hubrecht Institute-KNAW and University Medical Centre Utrecht, Uppsalalaan 8, Utrecht, The Netherlands.

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http://dx.doi.org/10.1016/j.cell.2009.09.012DOI Listing
October 2009

Semiconserved regulation of mesendoderm differentiation by microRNAs.

Authors:
René F Ketting

Dev Cell 2009 Apr;16(4):487-8

Hubrecht Institute-KNAW and University Medical Centre Utrecht, Utrecht, The Netherlands.

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http://linkinghub.elsevier.com/retrieve/pii/S153458070900135
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http://dx.doi.org/10.1016/j.devcel.2009.03.014DOI Listing
April 2009

RDE-1 slicer activity is required only for passenger-strand cleavage during RNAi in Caenorhabditis elegans.

Nat Struct Mol Biol 2009 Feb 18;16(2):207-11. Epub 2009 Jan 18.

Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences & University Medical Centre Utrecht, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/nsmb.1541DOI Listing
February 2009

Zili is required for germ cell differentiation and meiosis in zebrafish.

EMBO J 2008 Oct 2;27(20):2702-11. Epub 2008 Oct 2.

Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences, University Medical Centre Utrecht, Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/emboj.2008.204DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2572183PMC
October 2008

A dead end for microRNAs.

Authors:
René F Ketting

Cell 2007 Dec;131(7):1226-7

Hubrecht Institute, Uppsalalaan 8, 3584 CT, Utrecht, Netherlands.

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http://dx.doi.org/10.1016/j.cell.2007.12.004DOI Listing
December 2007

Structural features of small RNA precursors determine Argonaute loading in Caenorhabditis elegans.

Nat Struct Mol Biol 2007 Oct 23;14(10):927-33. Epub 2007 Sep 23.

Hubrecht Institute, Koninklijke Nederlandse Akademie van Wetenschappen, Utrecht, 3584 CT, The Netherlands.

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http://dx.doi.org/10.1038/nsmb1308DOI Listing
October 2007

Partners in dicing.

Authors:
René F Ketting

Genome Biol 2006 31;7(3):210. Epub 2006 Mar 31.

Hubrecht Laboratory (KNAW), Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.

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http://dx.doi.org/10.1186/gb-2006-7-3-210DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557742PMC
July 2006

Introduction of Double-Stranded RNA in C. elegans by Injection.

CSH Protoc 2006 Jun 1;2006(1). Epub 2006 Jun 1.

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http://dx.doi.org/10.1101/pdb.prot4315DOI Listing
June 2006

Introduction of Double-Stranded RNA in C. elegans by Soaking.

CSH Protoc 2006 Jun 1;2006(1). Epub 2006 Jun 1.

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http://dx.doi.org/10.1101/pdb.prot4316DOI Listing
June 2006

Introduction of Double-Stranded RNA in C. elegans by Feeding.

CSH Protoc 2006 Jun 1;2006(1). Epub 2006 Jun 1.

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http://dx.doi.org/10.1101/pdb.prot4317DOI Listing
June 2006

Cosuppression in C. elegans.

CSH Protoc 2006 Jun 1;2006(1). Epub 2006 Jun 1.

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http://www.cshprotocols.org/lookup/doi/10.1101/pdb.prot4318
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http://dx.doi.org/10.1101/pdb.prot4318DOI Listing
June 2006

Isolation of RNA from C. elegans.

CSH Protoc 2006 Jun 1;2006(1). Epub 2006 Jun 1.

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http://dx.doi.org/10.1101/pdb.prot4321DOI Listing
June 2006

RDE-2 interacts with MUT-7 to mediate RNA interference in Caenorhabditis elegans.

Nucleic Acids Res 2005 13;33(1):347-55. Epub 2005 Jan 13.

Hubrecht Laboratory, Centre for Biomedical Genetics Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1093/nar/gki183DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC546165PMC
February 2005

Substrate requirements for let-7 function in the developing zebrafish embryo.

Nucleic Acids Res 2004 7;32(21):6284-91. Epub 2004 Dec 7.

The Hubrecht Laboratory, Centre for Biomedical Genetics, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1093/nar/gkh968DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC535676PMC
December 2004

Processing of primary microRNAs by the Microprocessor complex.

Nature 2004 Nov 7;432(7014):231-5. Epub 2004 Nov 7.

Cold Spring Harbor Laboratory, Watson School of Biological Sciences, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA.

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http://cancan.cshl.edu/publications/Denli_2004_15531879.pdf
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http://www.nature.com/doifinder/10.1038/nature03049
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http://dx.doi.org/10.1038/nature03049DOI Listing
November 2004

What's new about RNAi? Meeting on siRNAs and miRNAs.

EMBO Rep 2004 Aug 23;5(8):762-5. Epub 2004 Jul 23.

Hubrecht Laboratory, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands.

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http://dx.doi.org/10.1038/sj.embor.7400207DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1299118PMC
August 2004

A micrococcal nuclease homologue in RNAi effector complexes.

Nature 2003 Sep;425(6956):411-4

Cold Spring Harbor Laboratory, Watson School of Biological Sciences, 1 Bungtown Road, Cold Spring Harbor, New York 11724, USA.

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http://www.nature.com/articles/nature01956
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http://dx.doi.org/10.1038/nature01956DOI Listing
September 2003

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics.

Nat Biotechnol 2003 Aug 13;21(8):927-31. Epub 2003 Jul 13.

Center for Biomedical Genetics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Sorbonnelaan 16, 3584 CA Utrecht, The Netherlands.

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http://search.proquest.com/openview/ce05f47f8bd593249ee64aba
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http://proteome.sysbiol.cam.ac.uk/lecture_and_papers/Papers/
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http://www.nature.com/doifinder/10.1038/nbt848
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http://dx.doi.org/10.1038/nbt848DOI Listing
August 2003

The genetics of RNA silencing.

Annu Rev Genet 2002 11;36:489-519. Epub 2002 Jun 11.

Hubrecht Laboratory, Center for Biomedical Genetics, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.

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http://dx.doi.org/10.1146/annurev.genet.36.043002.091619DOI Listing
July 2003

RNA helicase MUT-14-dependent gene silencing triggered in C. elegans by short antisense RNAs.

Science 2002 Jan;295(5555):694-7

Hubrecht Laboratory, Center for Biomedical Genetics, Uppsalalaan 8, 3584 CT, Utrecht, Netherlands.

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http://www.sciencemag.org/cgi/doi/10.1126/science.1067534
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http://dx.doi.org/10.1126/science.1067534DOI Listing
January 2002