Publications by authors named "Reinhard Simon"

18Publications

BrAPI-an application programming interface for plant breeding applications.

Authors:
Peter Selby Rafael Abbeloos Jan Erik Backlund Martin Basterrechea Salido Guillaume Bauchet Omar E Benites-Alfaro Clay Birkett Viana C Calaminos Pierre Carceller Guillaume Cornut Bruno Vasques Costa Jeremy D Edwards Richard Finkers Star Yanxin Gao Mehmood Ghaffar Philip Glaser Valentin Guignon Puthick Hok Andrzej Kilian Patrick König Jack Elendil B Lagare Matthias Lange Marie-Angélique Laporte Pierre Larmande David S LeBauer David A Lyon David S Marshall Dave Matthews Iain Milne Naymesh Mistry Nicolas Morales Lukas A Mueller Pascal Neveu Evangelia Papoutsoglou Brian Pearce Ivan Perez-Masias Cyril Pommier Ricardo H Ramírez-González Abhishek Rathore Angel Manica Raquel Sebastian Raubach Trevor Rife Kelly Robbins Mathieu Rouard Chaitanya Sarma Uwe Scholz Guilhem Sempéré Paul D Shaw Reinhard Simon Nahuel Soldevilla Gordon Stephen Qi Sun Clarysabel Tovar Grzegorz Uszynski Maikel Verouden

Bioinformatics 2019 10;35(20):4147-4155

Wageningen University & Research, Biometris, Wageningen PB, The Netherlands.

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October 2019

Genomic Analyses Yield Markers for Identifying Agronomically Important Genes in Potato.

Authors:
Yangping Li Christophe Colleoni Junjie Zhang Qiqi Liang Yufeng Hu Holly Ruess Reinhard Simon Yinghong Liu Hanmei Liu Guowu Yu Eric Schmitt Chloé Ponitzki Guangjian Liu Huanhuan Huang Feilong Zhan Lin Chen Yubi Huang David Spooner Binquan Huang

Mol Plant 2018 03 5;11(3):473-484. Epub 2018 Feb 5.

College of Agronomy, Sichuan Agricultural University, Chengdu, China; Joint International Research Laboratory of Crop Resources and Genetic Improvement of Ministry of Education, Sichuan Agricultural University, Chengdu, China; Department of Plant Sciences, University of Oxford, Oxford, UK. Electronic address:

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March 2018

Ex situ conservation priorities for the wild relatives of potato (solanum L. Section petota).

Authors:
Nora P Castañeda-Álvarez Stef de Haan Henry Juárez Colin K Khoury Harold A Achicanoy Chrystian C Sosa Vivian Bernau Alberto Salas Bettina Heider Reinhard Simon Nigel Maxted David M Spooner

PLoS One 2015 29;10(4):e0122599. Epub 2015 Apr 29.

USDA-ARS, Vegetable Crop Research Unit, Department of Horticulture, University of Wisconsin, Madison, Wisconsin, United States of America.

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January 2016

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Authors:
Damian Smedley Syed Haider Steffen Durinck Luca Pandini Paolo Provero James Allen Olivier Arnaiz Mohammad Hamza Awedh Richard Baldock Giulia Barbiera Philippe Bardou Tim Beck Andrew Blake Merideth Bonierbale Anthony J Brookes Gabriele Bucci Iwan Buetti Sarah Burge Cédric Cabau Joseph W Carlson Claude Chelala Charalambos Chrysostomou Davide Cittaro Olivier Collin Raul Cordova Rosalind J Cutts Erik Dassi Alex Di Genova Anis Djari Anthony Esposito Heather Estrella Eduardo Eyras Julio Fernandez-Banet Simon Forbes Robert C Free Takatomo Fujisawa Emanuela Gadaleta Jose M Garcia-Manteiga David Goodstein Kristian Gray José Afonso Guerra-Assunção Bernard Haggarty Dong-Jin Han Byung Woo Han Todd Harris Jayson Harshbarger Robert K Hastings Richard D Hayes Claire Hoede Shen Hu Zhi-Liang Hu Lucie Hutchins Zhengyan Kan Hideya Kawaji Aminah Keliet Arnaud Kerhornou Sunghoon Kim Rhoda Kinsella Christophe Klopp Lei Kong Daniel Lawson Dejan Lazarevic Ji-Hyun Lee Thomas Letellier Chuan-Yun Li Pietro Lio Chu-Jun Liu Jie Luo Alejandro Maass Jerome Mariette Thomas Maurel Stefania Merella Azza Mostafa Mohamed Francois Moreews Ibounyamine Nabihoudine Nelson Ndegwa Céline Noirot Cristian Perez-Llamas Michael Primig Alessandro Quattrone Hadi Quesneville Davide Rambaldi James Reecy Michela Riba Steven Rosanoff Amna Ali Saddiq Elisa Salas Olivier Sallou Rebecca Shepherd Reinhard Simon Linda Sperling William Spooner Daniel M Staines Delphine Steinbach Kevin Stone Elia Stupka Jon W Teague Abu Z Dayem Ullah Jun Wang Doreen Ware Marie Wong-Erasmus Ken Youens-Clark Amonida Zadissa Shi-Jian Zhang Arek Kasprzyk

Nucleic Acids Res 2015 Jul 20;43(W1):W589-98. Epub 2015 Apr 20.

Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

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July 2015

Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps.

Authors:
Sanjeev Kumar Sharma Daniel Bolser Jan de Boer Mads Sønderkær Walter Amoros Martin Federico Carboni Juan Martín D'Ambrosio German de la Cruz Alex Di Genova David S Douches Maria Eguiluz Xiao Guo Frank Guzman Christine A Hackett John P Hamilton Guangcun Li Ying Li Roberto Lozano Alejandro Maass David Marshall Diana Martinez Karen McLean Nilo Mejía Linda Milne Susan Munive Istvan Nagy Olga Ponce Manuel Ramirez Reinhard Simon Susan J Thomson Yerisf Torres Robbie Waugh Zhonghua Zhang Sanwen Huang Richard G F Visser Christian W B Bachem Boris Sagredo Sergio E Feingold Gisella Orjeda Richard E Veilleux Merideth Bonierbale Jeanne M E Jacobs Dan Milbourne David Michael Alan Martin Glenn J Bryan

G3 (Bethesda) 2013 Nov 6;3(11):2031-47. Epub 2013 Nov 6.

Cell and Molecular Sciences, The James Hutton Institute, Dundee DD2 5DA, United Kingdom.

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November 2013

Linking the potato genome to the conserved ortholog set (COS) markers.

Authors:
Hannele Lindqvist-Kreuze Kwangsoo Cho Leticia Portal Flor Rodríguez Reinhard Simon Lukas A Mueller David M Spooner Merideth Bonierbale

BMC Genet 2013 Jun 8;14:51. Epub 2013 Jun 8.

International Potato Center, Lima, Peru.

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June 2013

A new R package, exsic, to assist taxonomists in creating indices.

Authors:
Reinhard Simon David M Spooner

Appl Plant Sci 2013 Jun 7;1(6). Epub 2013 Jun 7.

USDA-Agricultural Research Service, Vegetable Crops Research Unit, University of Wisconsin, 1575 Linden Drive, Madison, Wisconsin 53706-1590 USA.

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June 2013

BioMart Central Portal: an open database network for the biological community.

Authors:
Jonathan M Guberman J Ai O Arnaiz Joachim Baran Andrew Blake Richard Baldock Claude Chelala David Croft Anthony Cros Rosalind J Cutts A Di Génova Simon Forbes T Fujisawa E Gadaleta D M Goodstein Gunes Gundem Bernard Haggarty Syed Haider Matthew Hall Todd Harris Robin Haw S Hu Simon Hubbard Jack Hsu Vivek Iyer Philip Jones Toshiaki Katayama R Kinsella Lei Kong Daniel Lawson Yong Liang Nuria Lopez-Bigas J Luo Michael Lush Jeremy Mason Francois Moreews Nelson Ndegwa Darren Oakley Christian Perez-Llamas Michael Primig Elena Rivkin S Rosanoff Rebecca Shepherd Reinhard Simon B Skarnes Damian Smedley Linda Sperling William Spooner Peter Stevenson Kevin Stone J Teague Jun Wang Jianxin Wang Brett Whitty D T Wong Marie Wong-Erasmus L Yao Ken Youens-Clark Christina Yung Junjun Zhang Arek Kasprzyk

Database (Oxford) 2011 18;2011:bar041. Epub 2011 Sep 18.

Ontario Institute for Cancer Research, Toronto, M5G 0A3, Canada.

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January 2012

Ecogeography of ploidy variation in cultivated potato (Solanum sect. Petota).

Authors:
David M Spooner Tatjana Gavrilenko Shelley H Jansky A Ovchinnikova E Krylova Sandra Knapp Reinhard Simon

Am J Bot 2010 Dec 24;97(12):2049-60. Epub 2010 Nov 24.

USDA, Agricultural Research Service, Department of Horticulture, University of Wisconsin, 1575 Linden Drive, Madison, Wisconsin 53706-1590 USA.

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December 2010

A sweet potato gene index established by de novo assembly of pyrosequencing and Sanger sequences and mining for gene-based microsatellite markers.

Authors:
Roland Schafleitner Luz R Tincopa Omar Palomino Genoveva Rossel Ronald F Robles Rocio Alagon Carlos Rivera Cynthia Quispe Luis Rojas Jaime A Pacheco Julio Solis Diogenes Cerna Ji Young Kim Jack Hou Reinhard Simon

BMC Genomics 2010 Oct 26;11:604. Epub 2010 Oct 26.

Germplasm Enhancement and Crop Improvement Division, International Potato Center, La Molina, Lima, Peru.

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October 2010

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: a generic method for diagnosis, discovery and sequencing of viruses.

Authors:
Jan F Kreuze Ana Perez Milton Untiveros Dora Quispe Segundo Fuentes Ian Barker Reinhard Simon

Virology 2009 May 23;388(1):1-7. Epub 2009 Apr 23.

Germplasm Enhancement and Crop Improved Division, Applied Biotechnology Laboratory, International Potato Center, Apartado, Lima 12, Peru.

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May 2009

The generation challenge programme platform: semantic standards and workbench for crop science.

Authors:
Richard Bruskiewich Martin Senger Guy Davenport Manuel Ruiz Mathieu Rouard Tom Hazekamp Masaru Takeya Koji Doi Kouji Satoh Marcos Costa Reinhard Simon Jayashree Balaji Akinnola Akintunde Ramil Mauleon Samart Wanchana Trushar Shah Mylah Anacleto Arllet Portugal Victor Jun Ulat Supat Thongjuea Kyle Braak Sebastian Ritter Alexis Dereeper Milko Skofic Edwin Rojas Natalia Martins Georgios Pappas Ryan Alamban Roque Almodiel Lord Hendrix Barboza Jeffrey Detras Kevin Manansala Michael Jonathan Mendoza Jeffrey Morales Barry Peralta Rowena Valerio Yi Zhang Sergio Gregorio Joseph Hermocilla Michael Echavez Jan Michael Yap Andrew Farmer Gary Schiltz Jennifer Lee Terry Casstevens Pankaj Jaiswal Ayton Meintjes Mark Wilkinson Benjamin Good James Wagner Jane Morris David Marshall Anthony Collins Shoshi Kikuchi Thomas Metz Graham McLaren Theo van Hintum

Int J Plant Genomics 2008 ;2008:369601

International Rice Research Institute, Metro Manila, Philippines.

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July 2010

Capturing candidate drought tolerance traits in two native Andean potato clones by transcription profiling of field grown plants under water stress.

Authors:
Roland Schafleitner Raymundo Oscar Gutierrez Rosales Amelie Gaudin Carlos Alberto Alvarado Aliaga Giannina Nomberto Martinez Luz Rosalina Tincopa Marca Luis Avila Bolivar Felipe Mendiburu Delgado Reinhard Simon Merideth Bonierbale

Plant Physiol Biochem 2007 Sep 28;45(9):673-90. Epub 2007 Jun 28.

Germplasm Enhancement and Crop Improvement Division, International Potato Center, Avenida La Molina 1895, Apartado 1558, La Molina, Lima 12, Peru.

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September 2007

Generation Challenge Programme (GCP): standards for crop data.

Authors:
Richard Bruskiewich Guy Davenport Tom Hazekamp Thomas Metz Manuel Ruiz Reinhard Simon Masaru Takeya Jennifer Lee Martin Senger Graham McLaren Theo Van Hintum

OMICS 2006 ;10(2):215-9

International Rice Research Institute (IRRI), Manila, Philippines.

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November 2007

The fast neutron component in treatment irradiations with 12C beam.

Authors:
Konstanze Gunzert-Marx Dieter Schardt Reinhard S Simon

Radiother Oncol 2004 Dec;73 Suppl 2:S92-5

Gesellschaft für Schwerionenforschung, Planckstrasse 1, 64291 Darmstadt, Germany.

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December 2004

Fast neutrons produced by nuclear fragmentation in treatment irradiations with 12C beam.

Authors:
Konstanze Gunzert-Marx Dieter Schardt Reinhard S Simon

Radiat Prot Dosimetry 2004 ;110(1-4):595-600

Gesellschaft für Schwerionenforschung, Planckstrasse 1, D-64291 Darmstadt, Germany.

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December 2004

Plant defense genes associated with quantitative resistance to potato late blight in Solanum phureja x dihaploid S. tuberosum hybrids.

Authors:
Friederike Trognitz Patricia Manosalva Rene Gysin David Niñio-Liu Reinhard Simon Ma Rosario del Herrera Bodo Trognitz Marc Ghislain Rebecca Nelson

Mol Plant Microbe Interact 2002 Jun;15(6):587-97

International Potato Center, Lima, Peru.

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June 2002

Conjugal Transfer of Megaplasmid 2 between Rhizobium meliloti Strains in Alfalfa Nodules.

Authors:
Inge-M Pretorius-Güth Alfred Pühler Reinhard Simon

Appl Environ Microbiol 1990 Aug;56(8):2354-2359

Lehrstuhl für Genetik, Fakultät für Biologie, Universität Bielefeld, Postfach 8640, D-4800 Bielefeld 1, Federal Republic of Germany.

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August 1990