Publications by authors named "Reinhard Schneider"

100Publications

LAITOR4HPC: A text mining pipeline based on HPC for building interaction networks.

BMC Bioinformatics 2020 Aug 24;21(1):365. Epub 2020 Aug 24.

University of Luxembourg, Luxembourg Centre for Systems Biomedicine, Bioinformatics Core, Esch-sur-Alzette, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-020-03620-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7447576PMC
August 2020

Morphology, structure, and composition of sulfidized silver nanoparticles and their aggregation dynamics in river water.

Sci Total Environ 2020 Oct 5;739:139989. Epub 2020 Jun 5.

iES Landau, Institute for Environmental Sciences, Group of Environmental and Soil Chemistry, University of Koblenz-Landau, Fortstraße 7, 76829 Landau, Germany. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.scitotenv.2020.139989DOI Listing
October 2020

Closing the gap between formats for storing layout information in systems biology.

Brief Bioinform 2020 Feb 21. Epub 2020 Feb 21.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 6, avenue du Swing L-4367 Belvaux, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbaa030DOI Listing
February 2020

Structure Quality of LuFeO Epitaxial Layers Grown by Pulsed-Laser Deposition on Sapphire/Pt.

Materials (Basel) 2019 Dec 21;13(1). Epub 2019 Dec 21.

Department of Solid State Physics, Charles University, Ke Karlovu 5, 121 16 Prague, Czech Republic.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/ma13010061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6982296PMC
December 2019

DAISY: A Data Information System for accountability under the General Data Protection Regulation.

Gigascience 2019 12;8(12)

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval 6, Avenue du Swing L-4367, Belvaux, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gigascience/giz140DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6892452PMC
December 2019

Closing the gap between formats for storing layout information in systems biology.

Brief Bioinform 2020 Jul;21(4):1249-1260

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 6, avenue du Swing L-4367 Belvaux, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbz067DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7373180PMC
July 2020

MINERVA API and plugins: opening molecular network analysis and visualization to the community.

Bioinformatics 2019 11;35(21):4496-4498

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux L-4367, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btz286DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821317PMC
November 2019

Fractalis: a scalable open-source service for platform-independent interactive visual analysis of biomedical data.

Gigascience 2018 09 1;7(9). Epub 2018 Sep 1.

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Campus Belval, 7 av. des Hauts-Fourneaux, L-4362 Esch-sur-Alzette.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/gigascience/giy109DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143733PMC
September 2018

Clustering approaches for visual knowledge exploration in molecular interaction networks.

BMC Bioinformatics 2018 Aug 29;19(1):308. Epub 2018 Aug 29.

Computer Science and Communications Research Unit, University of Luxembourg, 6, Avenue de la Fonte, Esch-Belval, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-018-2314-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6116538PMC
August 2018

Identification of early biological changes in palmitate-treated isolated human islets.

BMC Genomics 2018 Aug 22;19(1):629. Epub 2018 Aug 22.

Department of Medical Cell Biology, Uppsala University, Box 571, 75123, Uppsala, Sweden.

View Article

Download full-text PDF

Source
https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
Publisher Site
http://dx.doi.org/10.1186/s12864-018-5008-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6106933PMC
August 2018

Major coronary evaginations following implantation of bioresorbable vascular scaffolds - Clinical and OCT characteristics.

Cardiovasc Revasc Med 2019 06 4;20(6):485-491. Epub 2018 Aug 4.

Friedrich-Alexander Universität (FAU) Erlangen-Nürnberg, University Hospital Erlangen, Department of Cardiology, Erlangen, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.carrev.2018.08.001DOI Listing
June 2019

MolArt: a molecular structure annotation and visualization tool.

Bioinformatics 2018 12;34(23):4127-4128

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Belvaux, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bty489DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247942PMC
December 2018

Percutaneous coronary intervention of unprotected left main stenoses - Procedural data and outcome depending on SYNTAX I Score.

Cardiovasc Revasc Med 2018 10 6;19(7 Pt A):740-743. Epub 2018 Apr 6.

Friedrich-Alexander University Erlangen-Nürnberg, University Hospital Erlangen, Department of Cardiology, Erlangen, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.carrev.2018.04.003DOI Listing
October 2018

TIMP-2*IGFBP7 (Nephrocheck®) Measurements at Intensive Care Unit Admission After Cardiac Surgery are Predictive for Acute Kidney Injury Within 48 Hours.

Kidney Blood Press Res 2017 Jul 27;42(3):456-467. Epub 2017 Jul 27.

Institute of Clinical Epidemiology and Biometry, University of Würzburg, Würzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1159/000479298DOI Listing
July 2017

SmartR: an open-source platform for interactive visual analytics for translational research data.

Bioinformatics 2017 Jul;33(14):2229-2231

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch/Belval, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btx137DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5870773PMC
July 2017

Pancreatic Fat Is Associated With Metabolic Syndrome and Visceral Fat but Not Beta-Cell Function or Body Mass Index in Pediatric Obesity.

Pancreas 2017 03;46(3):358-365

From the Departments of *Medical Cell Biology and †Women's and Children's Health, Uppsala University, Uppsala, Sweden; ‡Department of Paediatrics, Division of Paediatric Gastroenterology, Hepatology and Nutrition and §Obesity Research Unit, Paracelsus Medical University, Salzburg, Austria; ∥Obesity Unit for Children and Adolescents, Uppsala University Children's Hospital, Uppsala, Sweden; ¶Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg; #Division of Endocrinology and Metabolism, Department of Internal Medicine, Medical University of Vienna, Vienna; **Department of Radiology, Paracelsus Medical University, Salzburg; ††Academic Institute for Clinical Nutrition, Vienna, Austria; and Departments of ‡‡Chemistry - BMC, Analytical Chemistry, and SciLifeLab and §§Surgical Sciences, Radiology, Uppsala University, Uppsala, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1097/MPA.0000000000000771DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5312728PMC
March 2017

Optical coherence tomography: influence of contrast concentration on image quality and diagnostic confidence.

Heart Vessels 2017 Jun 9;32(6):653-659. Epub 2016 Nov 9.

Department of Cardiology, Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU), University Hospital Erlangen, Ulmenweg 18, 91054, Erlangen, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00380-016-0918-7DOI Listing
June 2017

Thin-Film Phase Plates for Transmission Electron Microscopy Fabricated from Metallic Glasses.

Microsc Microanal 2016 10 29;22(5):955-963. Epub 2016 Sep 29.

2I. Physikalisches Institut,Universität Göttingen,Friedrich-Hund-Platz 1,D-37077 Göttingen,Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1017/S143192761601165XDOI Listing
October 2016

Luminescence mechanisms of defective ZnO nanoparticles.

Phys Chem Chem Phys 2016 Jun 2;18(24):16237-44. Epub 2016 Jun 2.

Dipartimento di Fisica e Chimica, Università di Palermo, Via Archirafi 36, I-90123 Palermo, Italia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1039/c6cp01513aDOI Listing
June 2016

Bioinformatics Mining and Modeling Methods for the Identification of Disease Mechanisms in Neurodegenerative Disorders.

Int J Mol Sci 2015 Dec 7;16(12):29179-206. Epub 2015 Dec 7.

Translational Science Unit, SANOFI Recherche & Développement, 1 Avenue Pierre Brossolette, Chilly-Mazarin Cedex 91385, France.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3390/ijms161226148DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4691095PMC
December 2015

Regulation of Expression of Renal Organic Anion Transporters OAT1 and OAT3 in a Model of Ischemia/Reperfusion Injury.

Cell Physiol Biochem 2015 12;37(1):1-13. Epub 2015 Aug 12.

Klinik fx00FC;r Anx00E4;sthesie und Operative Intensivmedizin, Universitx00E4;tsklinikum Halle (Saale), Halle (Saale), Germany.

View Article

Download full-text PDF

Source
https://www.karger.com/Article/FullText/430328
Publisher Site
http://dx.doi.org/10.1159/000430328DOI Listing
May 2016

Biomarkers of postoperative delirium and cognitive dysfunction.

Front Aging Neurosci 2015 9;7:112. Epub 2015 Jun 9.

Bioinformatics core, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg Belvaux, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3389/fnagi.2015.00112DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460425PMC
June 2015

RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis.

Bioinformatics 2015 Jul 25;31(13):2235-7. Epub 2015 Feb 25.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Esch-sur-Alzette, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btv127DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4481852PMC
July 2015

Monitoring the thin film formation during sputter deposition of vanadium carbide.

J Synchrotron Radiat 2015 Jan 1;22(1):76-85. Epub 2015 Jan 1.

ANKA/Institut für Photonenforschung und Synchrotronstrahlung, Karlsruher Institut für Technologie, Karlsruhe, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1107/S1600577514024412DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4294025PMC
January 2015

The HIV mutation browser: a resource for human immunodeficiency virus mutagenesis and polymorphism data.

PLoS Comput Biol 2014 Dec 4;10(12):e1003951. Epub 2014 Dec 4.

Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany; Molecular Medicine Partnership Unit, EMBL/Universitätsklinikum Heidelberg, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1003951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256008PMC
December 2014

Comparative pathway and network analysis of brain transcriptome changes during adult aging and in Parkinson's disease.

Neurobiol Dis 2015 Feb 12;74:1-13. Epub 2014 Nov 12.

Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.nbd.2014.11.002DOI Listing
February 2015

BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery.

Bioinformatics 2014 Nov 6;30(22):3249-56. Epub 2014 Aug 6.

Division of Basic Sciences, University of Crete, Medical School, Heraklion 71110, Greece, Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, Campus Belval, 7, avenue des Hauts-Fourneaux, L-4362 Esch sur Alzette, Luxembourg, Biological Computation & Process Laboratory (BCPL), Chemical Process & Energy Resources Institute (CPERI), Centre for Research & Technology Hellas (CERTH), PO Box 361, GR-57001 Thessalonica, Greece, Donnelly Centre for Cellular & Biomolecular Research, University of Toronto, Toronto, Ontario, Canada, Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, 70013 Heraklion, Crete, Greece and Department of Biological Sciences, Bioinformatics Research Laboratory, University of Cyprus, PO Box 20537, CY 1678, Nicosia, Cyprus.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btu524DOI Listing
November 2014

PredictProtein--an open resource for online prediction of protein structural and functional features.

Nucleic Acids Res 2014 Jul 5;42(Web Server issue):W337-43. Epub 2014 May 5.

Department of Informatics, Bioinformatics & Computational Biology i12, TUM (Technische Universität München), Garching/Munich 85748, Germany Biosof LLC, New York, NY 10001, USA New York Consortium on Membrane Protein Structure (NYCOMPS), Columbia University, New York, NY 10032, USA The Department of Biochemistry and Molecular Biology, George S. Wise Faculty of Life Sciences, Tel Aviv University, 69978 Tel Aviv, Israel Department of Biochemistry and Molecular Biophysics & New York Consortium on Membrane Protein Structure (NYCOMPS), Columbia University, New York, NY 10032, USA Institute for Advanced Study (TUM-IAS), Garching/Munich 85748, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gku366DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4086098PMC
July 2014

COMPARTMENTS: unification and visualization of protein subcellular localization evidence.

Database (Oxford) 2014 25;2014:bau012. Epub 2014 Feb 25.

Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany, Bioinformatics Core Facility, Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg, 4362 Esch-sur-Alzette, Luxembourg, Department of Disease Systems Biology, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark, CSIRO Computational Informatics, Sydney, NSW 2113 Australia and Garvan Institute of Medical Research, Sydney, NSW 2100, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/database/bau012DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3935310PMC
August 2014

Transformation of the matrix structure of shrimp shells during bacterial deproteination and demineralization.

Microb Cell Fact 2013 Oct 5;12:90. Epub 2013 Oct 5.

Institute of Biology for Engineers and Biotechnology of Wastewater, Karlsruhe Institute of Technology, Am Fasanengarten, Karlsruhe 76131, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1475-2859-12-90DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852495PMC
October 2013

Transcriptional mechanisms underlying sensitization of peripheral sensory neurons by granulocyte-/granulocyte-macrophage colony stimulating factors.

Mol Pain 2013 Sep 25;9:48. Epub 2013 Sep 25.

Institute for Pharmacology and Molecular Medicine Partnership Unit, Heidelberg University, Im Neuenheimer Feld 366, D-69120 Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://journals.sagepub.com/doi/10.1186/1744-8069-9-48
Publisher Site
http://dx.doi.org/10.1186/1744-8069-9-48DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3852053PMC
September 2013

Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain.

EMBO Mol Med 2013 11 18;5(11):1740-58. Epub 2013 Oct 18.

Medical Faculty Heidelberg, Institute for Pharmacology, Heidelberg University, Heidelberg, Germany; Molecular Medicine Partnership Unit with European Molecular Biology Laboratory, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/emmm.201302797DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3840489PMC
November 2013

Signaling in insulin-secreting MIN6 pseudoislets and monolayer cells.

J Proteome Res 2013 Dec 30;12(12):5954-62. Epub 2013 Sep 30.

Department of Medical Cell Biology, Uppsala University , Box 571, SE-75123 Uppsala, Sweden.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr400864wDOI Listing
December 2013

PhenoTimer: software for the visual mapping of time-resolved phenotypic landscapes.

PLoS One 2013 12;8(8):e72361. Epub 2013 Aug 12.

Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0072361PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3741141PMC
April 2014

Toward silicon anodes for next-generation lithium ion batteries: a comparative performance study of various polymer binders and silicon nanopowders.

ACS Appl Mater Interfaces 2013 Aug 1;5(15):7299-307. Epub 2013 Aug 1.

Battery and Electrochemistry Laboratory, Institute of Nanotechnology, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/am401642c
Publisher Site
http://dx.doi.org/10.1021/am401642cDOI Listing
August 2013

Unraveling genomic variation from next generation sequencing data.

BioData Min 2013 Jul 25;6(1):13. Epub 2013 Jul 25.

Division of Basic Sciences, University of Crete Medical School, Heraklion 71110, Greece.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0381-6-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3726446PMC
July 2013

Increased symmetrical dimethylarginine in ischemic acute kidney injury as a causative factor of renal L-arginine deficiency.

Transl Res 2013 Aug 22;162(2):67-76. Epub 2013 May 22.

Division of Nephrology, Department of Medicine I, University Hospital of Würzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.trsl.2013.04.005DOI Listing
August 2013

Application of low-energy scanning transmission electron microscopy for the study of Pt-nanoparticle uptake in human colon carcinoma cells.

Nanotoxicology 2014 Jun 9;8(4):433-46. Epub 2013 May 9.

Laboratorium für Elektronenmikroskopie, Karlsruher Institut für Technologie (KIT) , 76128 Karlsruhe , Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.3109/17435390.2013.796535DOI Listing
June 2014

Visualizing time-related data in biology, a review.

Brief Bioinform 2014 Sep 12;15(5):771-82. Epub 2013 Apr 12.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bib/bbt021DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4171679PMC
September 2014

Resemblance of electrospun collagen nanofibers to their native structure.

Langmuir 2013 Feb 22;29(5):1562-72. Epub 2013 Jan 22.

Karlsruhe Institute of Technology (KIT), D-76021 Karlsruhe, Germany.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/10.1021/la3033258
Publisher Site
http://dx.doi.org/10.1021/la3033258DOI Listing
February 2013

ReLiance: a machine learning and literature-based prioritization of receptor--ligand pairings.

Bioinformatics 2012 Sep;28(18):i569-i574

IBBT Future Health Department/ESAT-SCD, KU Leuven, Kasteelpark Arenberg 10, 3001, Heverlee-Leuven, Belgium.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bts391DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436818PMC
September 2012

EnrichNet: network-based gene set enrichment analysis.

Bioinformatics 2012 Sep;28(18):i451-i457

Luxembourg Centre for Systems Biomedicine, University of Luxembourg, L-4362 Esch-sur-Alzette, Luxembourg.

View Article

Download full-text PDF

Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/bts389DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3436816PMC
September 2012

Human gene correlation analysis (HGCA): a tool for the identification of transcriptionally co-expressed genes.

BMC Res Notes 2012 Jun 6;5:265. Epub 2012 Jun 6.

Cryobiology of Stem Cells, Centre of Immunology and Transplantation, Biomedical Research Foundation, Academy of Athens, Soranou Athens, Greece.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0500-5-265DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3441226PMC
June 2012

How not to be a bioinformatician.

Source Code Biol Med 2012 May 28;7(1). Epub 2012 May 28.

Independent, Cambridge, UK.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1751-0473-7-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3430599PMC
May 2012

Rosiglitazone affects nitric oxide synthases and improves renal outcome in a rat model of severe ischemia/reperfusion injury.

PPAR Res 2012 15;2012:219319. Epub 2012 Feb 15.

Medizinische Klinik und Poliklinik I, Nephrologie, Universitätsklinikum Würzburg, 97080 Würzburg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1155/2012/219319DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3289925PMC
August 2012

Arena3D: visualizing time-driven phenotypic differences in biological systems.

BMC Bioinformatics 2012 Mar 22;13:45. Epub 2012 Mar 22.

Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, Heidelberg 69117, Germany.

View Article

Download full-text PDF

Source
http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
Publisher Site
http://dx.doi.org/10.1186/1471-2105-13-45DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368716PMC
March 2012

Caipirini: using gene sets to rank literature.

BioData Min 2012 Feb 1;5(1). Epub 2012 Feb 1.

Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0381-5-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3307494PMC
February 2012

Which clustering algorithm is better for predicting protein complexes?

BMC Res Notes 2011 Dec 20;4:549. Epub 2011 Dec 20.

Bioinformatics & Medical Informatics Team, Biomedical Research Foundation, Academy of Athens, Soranou Efessiou 4, 11527 Athens, Greece.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0500-4-549DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3267700PMC
December 2011

Quantitative high-resolution transmission electron microscopy of single atoms.

Microsc Microanal 2012 Feb 12;18(1):212-7. Epub 2011 Dec 12.

Laboratorium für Elektronenmikroskopie, Karlsruher Institut für Technologie, 76128 Karlsruhe, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1017/S1431927611012232DOI Listing
February 2012

PathVar: analysis of gene and protein expression variance in cellular pathways using microarray data.

Bioinformatics 2012 Feb 28;28(3):446-7. Epub 2011 Nov 28.

Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, 69117, Heidelberg, Germany.

View Article

Download full-text PDF

Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btr656DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3268235PMC
February 2012

Medusa: A tool for exploring and clustering biological networks.

BMC Res Notes 2011 Oct 6;4:384. Epub 2011 Oct 6.

Katholieke Universiteit Leuven, Faculty of Engineering - ESAT/SCD, Kasteelpark Arenberg 10, 3001 Leuven-Heverlee, Belgium.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0500-4-384DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3197509PMC
October 2011

Using graph theory to analyze biological networks.

BioData Min 2011 Apr 28;4:10. Epub 2011 Apr 28.

Department of Computer Science and Biomedical Informatics, University of Central Greece, Lamia, 35100, Greece.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0381-4-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3101653PMC
April 2011

Facile preparation of water-soluble fluorescent gold nanoclusters for cellular imaging applications.

Nanoscale 2011 May 10;3(5):2009-14. Epub 2011 Feb 10.

Institute of Applied Physics and Center for Functional Nanostructures (CFN), Karlsruhe Institute of Technology (KIT), Wolfgang-Gaede-Strasse 1, 76131 Karlsruhe, Germany.

View Article

Download full-text PDF

Source
http://xlink.rsc.org/?DOI=c0nr00947d
Publisher Site
http://dx.doi.org/10.1039/c0nr00947dDOI Listing
May 2011

Platinum nanoparticles and their cellular uptake and DNA platination at non-cytotoxic concentrations.

Arch Toxicol 2011 Jul 13;85(7):799-812. Epub 2011 Jan 13.

Department of Food Chemistry and Toxicology, University of Vienna, Vienna, Austria.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s00204-010-0636-3DOI Listing
July 2011

A series of PDB related databases for everyday needs.

Nucleic Acids Res 2011 Jan 11;39(Database issue):D411-9. Epub 2010 Nov 11.

Department of Biochemistry, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX Amsterdam, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkq1105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3013697PMC
January 2011

A reference guide for tree analysis and visualization.

BioData Min 2010 Feb 22;3(1). Epub 2010 Feb 22.

Structural and Computational Biology Unit, EMBL, Meyerhofstrasse 1, Heidelberg, Germany.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1756-0381-3-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2844399PMC
February 2010

Live coverage of scientific conferences using web technologies.

PLoS Comput Biol 2010 Jan 29;6(1):e1000563. Epub 2010 Jan 29.

Centre for Integrated Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Newcastle University, Campus for Ageing and Vitality, Newcastle upon Tyne, United Kingdom.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1000563DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2813255PMC
January 2010

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on computational biology (ISMB/ECCB) 2009.

PLoS Comput Biol 2010 Jan 29;6(1):e1000640. Epub 2010 Jan 29.

Centre for Integrated Systems Biology of Ageing and Nutrition, Institute for Ageing and Health, Newcastle University, Campus for Ageing and Vitality, Newcastle upon Tyne, United Kingdom.

View Article

Download full-text PDF

Source
https://dx.plos.org/10.1371/journal.pcbi.1000640
Publisher Site
http://dx.doi.org/10.1371/journal.pcbi.1000640DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2813254PMC
January 2010

Implementation of an in vitro model system for investigation of reperfusion damage after renal ischemia.

Cell Physiol Biochem 2009 4;24(5-6):567-76. Epub 2009 Nov 4.

Physiologisches Institut, Bay. Julius-Maximilians Universitat Wurzburg, Germany.

View Article

Download full-text PDF

Source
https://www.karger.com/Article/FullText/257513
Publisher Site
http://dx.doi.org/10.1159/000257513DOI Listing
February 2010