Reda Rawi

Reda Rawi

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Reda Rawi

Reda Rawi

Publications by authors named "Reda Rawi"

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31Publications

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BCrystal: an interpretable sequence-based protein crystallization predictor.

Bioinformatics 2020 Mar;36(5):1429-1438

Data Analytics, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha 34110, Qatar.

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http://dx.doi.org/10.1093/bioinformatics/btz762DOI Listing
March 2020

Accurate Prediction for Antibody Resistance of Clinical HIV-1 Isolates.

Sci Rep 2019 Oct 11;9(1):14696. Epub 2019 Oct 11.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, 20892, MD, USA.

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http://dx.doi.org/10.1038/s41598-019-50635-wDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6789020PMC
October 2019

KinVis: a visualization tool to detect cryptic relatedness in genetic datasets.

Bioinformatics 2019 Aug;35(15):2683-2685

Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar.

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http://dx.doi.org/10.1093/bioinformatics/bty1028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6931347PMC
August 2019

Prediction of protein group function by iterative classification on functional relevance network.

Bioinformatics 2019 04;35(8):1388-1394

Department of Computer Science, Purdue University, West Lafayette, IN, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty787DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6477972PMC
April 2019

Longitudinal Analysis Reveals Early Development of Three MPER-Directed Neutralizing Antibody Lineages from an HIV-1-Infected Individual.

Immunity 2019 03 12;50(3):677-691.e13. Epub 2019 Mar 12.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613193007
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http://dx.doi.org/10.1016/j.immuni.2019.02.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6555550PMC
March 2019

Structural Survey of Broadly Neutralizing Antibodies Targeting the HIV-1 Env Trimer Delineates Epitope Categories and Characteristics of Recognition.

Structure 2019 01 21;27(1):196-206.e6. Epub 2018 Nov 21.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA; Department of Biochemistry and Molecular Biophysics & Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY 10032, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S09692126183036
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http://dx.doi.org/10.1016/j.str.2018.10.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6664815PMC
January 2019

CRISPro: An Automated Pipeline for Protein Conformation Stabilization by Proline.

J Chem Inf Model 2018 11 19;58(11):2189-2192. Epub 2018 Oct 19.

Vaccine Research Center, National Institute of Allergy and Infectious Diseases , National Institutes of Health , Bethesda , Maryland 20892 , United States.

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http://pubs.acs.org/doi/10.1021/acs.jcim.8b00592
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http://dx.doi.org/10.1021/acs.jcim.8b00592DOI Listing
November 2018

DeepSol: a deep learning framework for sequence-based protein solubility prediction.

Bioinformatics 2018 08;34(15):2605-2613

Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar.

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http://dx.doi.org/10.1093/bioinformatics/bty166DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355112PMC
August 2018

Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV.

PLoS Pathog 2018 07 5;14(7):e1007159. Epub 2018 Jul 5.

Basic Sciences Division and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

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http://dx.doi.org/10.1371/journal.ppat.1007159DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6049957PMC
July 2018

PaRSnIP: sequence-based protein solubility prediction using gradient boosting machine.

Bioinformatics 2018 04;34(7):1092-1098

Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/bioinformatics/btx662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6031027PMC
April 2018

COUSCOus: improved protein contact prediction using an empirical Bayes covariance estimator.

BMC Bioinformatics 2016 Dec 15;17(1):533. Epub 2016 Dec 15.

Computational Science and Engineering, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar.

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http://dx.doi.org/10.1186/s12859-016-1400-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5159955PMC
December 2016

Coevolution Analysis of HIV-1 Envelope Glycoprotein Complex.

PLoS One 2015 18;10(11):e0143245. Epub 2015 Nov 18.

Computational Sciences and Engineering Center, Qatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0143245PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4651434PMC
June 2016

Model selection emphasises the importance of non-chromosomal information in genetic studies.

PLoS One 2015 27;10(1):e0117014. Epub 2015 Jan 27.

Computational Science and Engineering Center, Qatar Computing Research Institute, Doha, Qatar.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117014PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4308103PMC
January 2016

A small set of succinct signature patterns distinguishes Chinese and non-Chinese HIV-1 genomes.

PLoS One 2013 19;8(3):e58804. Epub 2013 Mar 19.

Research Group Bioinformatics, Center for Medical Biology, University of Duisburg-Essen, Essen, Germany.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058804PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3602349PMC
September 2013

Inference of global HIV-1 sequence patterns and preliminary feature analysis.

Virol Sin 2013 Aug 27;28(4):228-38. Epub 2013 Jul 27.

AIDS and HIV Research Group, State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China.

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http://dx.doi.org/10.1007/s12250-013-3348-zDOI Listing
August 2013

CHOYCE: a web server for constrained homology modelling with cryoEM maps.

Bioinformatics 2010 Jul 5;26(13):1673-4. Epub 2010 May 5.

Institute of Structural and Molecular Biology, Crystallography, Department of Biological Sciences, Birkbeck College, University of London, London, UK.

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http://dx.doi.org/10.1093/bioinformatics/btq237DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2887048PMC
July 2010