Rashmi Sinha

Rashmi Sinha

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Rashmi Sinha

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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Authors:
Evan Bolyen Jai Ram Rideout Matthew R Dillon Nicholas A Bokulich Christian C Abnet Gabriel A Al-Ghalith Harriet Alexander Eric J Alm Manimozhiyan Arumugam Francesco Asnicar Yang Bai Jordan E Bisanz Kyle Bittinger Asker Brejnrod Colin J Brislawn C Titus Brown Benjamin J Callahan Andrés Mauricio Caraballo-Rodríguez John Chase Emily K Cope Ricardo Da Silva Christian Diener Pieter C Dorrestein Gavin M Douglas Daniel M Durall Claire Duvallet Christian F Edwardson Madeleine Ernst Mehrbod Estaki Jennifer Fouquier Julia M Gauglitz Sean M Gibbons Deanna L Gibson Antonio Gonzalez Kestrel Gorlick Jiarong Guo Benjamin Hillmann Susan Holmes Hannes Holste Curtis Huttenhower Gavin A Huttley Stefan Janssen Alan K Jarmusch Lingjing Jiang Benjamin D Kaehler Kyo Bin Kang Christopher R Keefe Paul Keim Scott T Kelley Dan Knights Irina Koester Tomasz Kosciolek Jorden Kreps Morgan G I Langille Joslynn Lee Ruth Ley Yong-Xin Liu Erikka Loftfield Catherine Lozupone Massoud Maher Clarisse Marotz Bryan D Martin Daniel McDonald Lauren J McIver Alexey V Melnik Jessica L Metcalf Sydney C Morgan Jamie T Morton Ahmad Turan Naimey Jose A Navas-Molina Louis Felix Nothias Stephanie B Orchanian Talima Pearson Samuel L Peoples Daniel Petras Mary Lai Preuss Elmar Pruesse Lasse Buur Rasmussen Adam Rivers Michael S Robeson Patrick Rosenthal Nicola Segata Michael Shaffer Arron Shiffer Rashmi Sinha Se Jin Song John R Spear Austin D Swafford Luke R Thompson Pedro J Torres Pauline Trinh Anupriya Tripathi Peter J Turnbaugh Sabah Ul-Hasan Justin J J van der Hooft Fernando Vargas Yoshiki Vázquez-Baeza Emily Vogtmann Max von Hippel William Walters Yunhu Wan Mingxun Wang Jonathan Warren Kyle C Weber Charles H D Williamson Amy D Willis Zhenjiang Zech Xu Jesse R Zaneveld Yilong Zhang Qiyun Zhu Rob Knight J Gregory Caporaso

Nat Biotechnol 2019 Aug;37(8):852-857

Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.

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http://dx.doi.org/10.1038/s41587-019-0209-9DOI Listing
August 2019

Association between meat consumption and risk of breast cancer: Findings from the Sister Study.

Int J Cancer 2019 Aug 6. Epub 2019 Aug 6.

Epidemiology Branch, National Institute of Environmental Health Sciences, Research Triangle Park, NC.

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http://dx.doi.org/10.1002/ijc.32547DOI Listing
August 2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.

Authors:
Evan Bolyen Jai Ram Rideout Matthew R Dillon Nicholas A Bokulich Christian C Abnet Gabriel A Al-Ghalith Harriet Alexander Eric J Alm Manimozhiyan Arumugam Francesco Asnicar Yang Bai Jordan E Bisanz Kyle Bittinger Asker Brejnrod Colin J Brislawn C Titus Brown Benjamin J Callahan Andrés Mauricio Caraballo-Rodríguez John Chase Emily K Cope Ricardo Da Silva Christian Diener Pieter C Dorrestein Gavin M Douglas Daniel M Durall Claire Duvallet Christian F Edwardson Madeleine Ernst Mehrbod Estaki Jennifer Fouquier Julia M Gauglitz Sean M Gibbons Deanna L Gibson Antonio Gonzalez Kestrel Gorlick Jiarong Guo Benjamin Hillmann Susan Holmes Hannes Holste Curtis Huttenhower Gavin A Huttley Stefan Janssen Alan K Jarmusch Lingjing Jiang Benjamin D Kaehler Kyo Bin Kang Christopher R Keefe Paul Keim Scott T Kelley Dan Knights Irina Koester Tomasz Kosciolek Jorden Kreps Morgan G I Langille Joslynn Lee Ruth Ley Yong-Xin Liu Erikka Loftfield Catherine Lozupone Massoud Maher Clarisse Marotz Bryan D Martin Daniel McDonald Lauren J McIver Alexey V Melnik Jessica L Metcalf Sydney C Morgan Jamie T Morton Ahmad Turan Naimey Jose A Navas-Molina Louis Felix Nothias Stephanie B Orchanian Talima Pearson Samuel L Peoples Daniel Petras Mary Lai Preuss Elmar Pruesse Lasse Buur Rasmussen Adam Rivers Michael S Robeson Patrick Rosenthal Nicola Segata Michael Shaffer Arron Shiffer Rashmi Sinha Se Jin Song John R Spear Austin D Swafford Luke R Thompson Pedro J Torres Pauline Trinh Anupriya Tripathi Peter J Turnbaugh Sabah Ul-Hasan Justin J J van der Hooft Fernando Vargas Yoshiki Vázquez-Baeza Emily Vogtmann Max von Hippel William Walters Yunhu Wan Mingxun Wang Jonathan Warren Kyle C Weber Charles H D Williamson Amy D Willis Zhenjiang Zech Xu Jesse R Zaneveld Yilong Zhang Qiyun Zhu Rob Knight J Gregory Caporaso

Nat Biotechnol 2019 Aug 9. Epub 2019 Aug 9.

Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.

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http://dx.doi.org/10.1038/s41587-019-0252-6DOI Listing
August 2019

Integrative microRNA and gene expression analysis identifies new drug repurposing candidates for fetal hemoglobin induction in β-hemoglobinopathies.

Gene 2019 Jul 29;706:77-83. Epub 2019 Apr 29.

School of Medical Science and Technology, Indian Institute of Technology Kharagpur, West Bengal 721302, India. Electronic address:

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http://dx.doi.org/10.1016/j.gene.2019.04.077DOI Listing
July 2019

Substitution of dietary protein sources in relation to colorectal cancer risk in the NIH-AARP cohort study.

Cancer Causes Control 2019 Jul 20. Epub 2019 Jul 20.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1007/s10552-019-01210-1DOI Listing
July 2019

Coffee and tea drinking and risk of cancer of the urinary tract in male smokers.

Ann Epidemiol 2019 Jun 3;34:33-39. Epub 2019 Apr 3.

Metabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Rockville, MD.

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https://linkinghub.elsevier.com/retrieve/pii/S10472797183101
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http://dx.doi.org/10.1016/j.annepidem.2019.03.014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6684125PMC
June 2019

Prospective investigation of serum metabolites, coffee drinking, liver cancer incidence, and liver disease mortality.

J Natl Cancer Inst 2019 Jun 5. Epub 2019 Jun 5.

Metabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1093/jnci/djz122DOI Listing
June 2019

THREE AUTHORS REPLY.

Am J Epidemiol 2019 Apr;188(4):308-309

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD.

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http://dx.doi.org/10.1093/aje/kwz022DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6438803PMC
April 2019

Comparison of Oral Collection Methods for Studies of Microbiota.

Cancer Epidemiol Biomarkers Prev 2019 Jan 27;28(1):137-143. Epub 2018 Sep 27.

Metabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, NCI, NIH, Bethesda, Maryland.

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http://dx.doi.org/10.1158/1055-9965.EPI-18-0312DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324947PMC
January 2019

Association of dietary fibre intake and gut microbiota in adults.

Br J Nutr 2018 11;120(9):1014-1022

1Perlmutter Cancer Center,New York University Langone Medical Center,New York,NY 10016,USA.

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http://dx.doi.org/10.1017/S0007114518002465DOI Listing
November 2018

Body Mass Index, Diabetes and Intrahepatic Cholangiocarcinoma Risk: The Liver Cancer Pooling Project and Meta-analysis.

Am J Gastroenterol 2018 Oct 3;113(10):1494-1505. Epub 2018 Sep 3.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD, USA. Department of Population Health, New York University School of Medicine, New York, NY, USA. Channing Division of Network Medicine, Brigham and Women's Hospital, Boston, MA, USA. Department of Epidemiology and Environmental Health, University at Buffalo, Buffalo, NY, USA. Department of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, MA, USA. Department of Nutrition, Harvard T.H. Chan School of Public Health, Boston, MA, USA. Division of Preventive Medicine, Department of Medicine, Brigham and Women's Hospital, Boston, MA, USA. Slone Epidemiology Center at Boston University, Boston, MA, USA. Department of Epidemiology & Population Health, Albert Einstein College of Medicine, Bronx, NY, USA. Department of Exercise and Nutrition Sciences, Milken Institute School of Public Health, George Washington University, Washington, DC, USA. Division of Pediatric Epidemiology and Clinical Research and Masonic Cancer Center, University of Minnesota, Minneapolis, MN, USA. Epidemiology Research Program, American Cancer Society, Atlanta, GA, USA. VA Boston Healthcare System, Boston, MA, USA. Division of Medical Oncology, National Cancer Centre, Singapore, Singapore. Division of Gastroenterology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.

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http://www.nature.com/articles/s41395-018-0207-4
Publisher Site
http://dx.doi.org/10.1038/s41395-018-0207-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6521884PMC
October 2018

Association of Coffee Drinking With Mortality by Genetic Variation in Caffeine Metabolism: Findings From the UK Biobank.

JAMA Intern Med 2018 Aug;178(8):1086-1097

Metabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Rockville, Maryland.

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http://dx.doi.org/10.1001/jamainternmed.2018.2425DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6143111PMC
August 2018

Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies.

Cancer Epidemiol Biomarkers Prev 2018 05 23;27(5):594-600. Epub 2018 Feb 23.

Metabolic Epidemiology Branch, Division of Cancer Epidemiology & Genetics, National Cancer Institute, Bethesda, Maryland.

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http://dx.doi.org/10.1158/1055-9965.EPI-17-1004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932224PMC
May 2018

Dietary Fat Intake and Lung Cancer Risk: A Pooled Analysis.

J Clin Oncol 2017 Sep 25;35(26):3055-3064. Epub 2017 Jul 25.

Jae Jeong Yang, Danxia Yu, Yumie Takata, William Blot, Wei Zheng, and Xiao-Ou Shu, Vanderbilt University Medical Center, Nashville, TN; Yumie Takata, Oregon State University, Corvallis, OR; Stephanie A. Smith-Warner, Meir Stampfer, and Walter Willett, Harvard T.H. Chan School of Public Health, Boston, MA; Emily White, Fred Hutchinson Cancer Research Center, Seattle, WA; Kim Robien, George Washington University, Washington, DC; Yikyung Park, Washington University School of Medicine, St Louis, MO; Yong-Bing Xiang and Yu-Tang Gao, Shanghai Jiaotong University School of Medicine, Shanghai, People's Republic of China; Rashmi Sinha and Linda Liao, National Cancer Institute, Bethesda, MD; DeAnn Lazovich, University of Minnesota, Minneapolis, MN; Rosario Tumino, "Civic - M.P. Arezzo" Hospital, ASP Ragusa, Italy; Dagfinn Aune, Imperial College, London, United Kingdom; Kim Overvad, Aarhus University, Aarhus, Denmark; Xuehong Zhang, Brigham and Women's Hospital and Harvard Medical School, Boston, MA; Mattias Johansson, International Agency for Research on Cancer, Lyons, France.

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http://dx.doi.org/10.1200/JCO.2017.73.3329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5590804PMC
September 2017

A Prospective Investigation of Coffee Drinking and Bladder Cancer Incidence in the United States.

Epidemiology 2017 09;28(5):685-693

From the aMetabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD; and bBiostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD.

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http://dx.doi.org/10.1097/EDE.0000000000000676DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5604321PMC
September 2017

Coffee Drinking and Mortality in 10 European Countries: A Multinational Cohort Study.

Ann Intern Med 2017 Aug 11;167(4):236-247. Epub 2017 Jul 11.

From International Agency for Research on Cancer, Lyon, France; Imperial College London, London, United Kingdom; Institut Gustave Roussy, Villejuif, France; German Cancer Research Center, Heidelberg, Germany; German Institute of Human Nutrition Potsdam-Rehbruecke, Nuthetal, Germany; Danish Cancer Society Research Center, Copenhagen, Denmark; Aarhus University, Aarhus, Denmark; Bispebjerg and Frederiksberg Hospital, Frederiksberg, Denmark; Public Health Directorate, Asturias, Spain; Catalan Institute of Oncology, Barcelona, Spain; Andalusian School of Public Health, Granada, Spain; Public Health Division of Gipuzkoa, Basque Regional Health Department, San Sebastián, Spain; Murcia Regional Health Council, Murcia, Spain; Navarre Public Health Institute, Pamplona, Spain; University of Cambridge and MRC Epidemiology Unit, Cambridge, United Kingdom; University of Oxford, Oxford, United Kingdom; Hellenic Health Foundation, Athens, Greece; Harvard T.H. Chan School of Public Health, Boston, Massachusetts; Cancer Research and Prevention Institute-ISPO, Florence, Italy; Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, Italy; Federico II University, Naples, Italy; "Civic - M.P. Arezzo" Hospital, ASP Ragusa, Ragusa, Italy; National Institute for Public Health and the Environment, Bilthoven, the Netherlands; University Medical Centre, Utrecht, the Netherlands; Malmö University Hospital, Malmö, Sweden; Umeå University, Umeå, Sweden; Swedish University of Agricultural Sciences, Uppsala, Sweden; University of Tromsø, The Arctic University of Norway, Tromsø, Norway; and National Cancer Institute, Bethesda, Maryland.

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http://dx.doi.org/10.7326/M16-2945DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5788283PMC
August 2017

Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh.

Appl Environ Microbiol 2017 05 1;83(10). Epub 2017 May 1.

Metabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1128/AEM.00361-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5411505PMC
May 2017

Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies.

Cancer Epidemiol Biomarkers Prev 2016 11 19;25(11):1483-1490. Epub 2016 Aug 19.

Metabolic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, Maryland.

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http://dx.doi.org/10.1158/1055-9965.EPI-16-0409DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5093035PMC
November 2016

Comparing metabolite profiles of habitual diet in serum and urine.

Am J Clin Nutr 2016 Sep 10;104(3):776-89. Epub 2016 Aug 10.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD;

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http://dx.doi.org/10.3945/ajcn.116.135301DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4997302PMC
September 2016

Development and calibration of a dietary nitrate and nitrite database in the NIH-AARP Diet and Health Study.

Public Health Nutr 2016 08 2;19(11):1934-43. Epub 2015 Dec 2.

1Occupational and Environmental Epidemiology Branch,Division of Cancer Epidemiology & Genetics,National Cancer Institute,National Institutes of Health,Department of Health and Human Services,9609 Medical Center Drive,6E314,Rockville,MD 20850,USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5074377PMC
http://dx.doi.org/10.1017/S1368980015003407DOI Listing
August 2016

Fecal Microbiota, Fecal Metabolome, and Colorectal Cancer Interrelations.

PLoS One 2016 25;11(3):e0152126. Epub 2016 Mar 25.

Epidemiology and Biostatistics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, 9609 Medical Center Drive, Bethesda, Maryland 20892-9704, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152126PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4807824PMC
August 2016

Parity and Oral Contraceptive Use in Relation to Ovarian Cancer Risk in Older Women.

Cancer Epidemiol Biomarkers Prev 2016 07 12;25(7):1059-63. Epub 2016 Apr 12.

Division of Epidemiology, Department of Health Research and Policy, Stanford University School of Medicine, Stanford, California.

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http://dx.doi.org/10.1158/1055-9965.EPI-16-0011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4930714PMC
July 2016

Coffee consumption and incidence of lung cancer in the NIH-AARP Diet and Health Study.

Int J Epidemiol 2016 06 16;45(3):929-39. Epub 2015 Jun 16.

Nutritional Epidemiology Branch, Biostatistics Branch and Genetic Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, Bethesda, MD, USA.

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http://dx.doi.org/10.1093/ije/dyv104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5005936PMC
June 2016

Fecal Microbiome in Epidemiologic Studies-Response.

Cancer Epidemiol Biomarkers Prev 2016 05 9;25(5):870-1. Epub 2016 Mar 9.

Microbiome Program, Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota. Health Sciences Research, Mayo Clinic, Rochester, Minnesota. Department of Surgery, Mayo Clinic, Rochester, Minnesota. Biomedical Engineering and Physiology, Mayo College, Rochester, Minnesota.

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http://dx.doi.org/10.1158/1055-9965.EPI-16-0161DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4873434PMC
May 2016

Red and processed meat, nitrite, and heme iron intakes and postmenopausal breast cancer risk in the NIH-AARP Diet and Health Study.

Int J Cancer 2016 Apr 20;138(7):1609-18. Epub 2015 Nov 20.

Occupational and Environmental Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD.

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http://dx.doi.org/10.1002/ijc.29901DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724256PMC
April 2016

Dietary components and risk of total, cancer and cardiovascular disease mortality in the Linxian Nutrition Intervention Trials cohort in China.

Sci Rep 2016 Mar 4;6:22619. Epub 2016 Mar 4.

Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, 20850, USA.

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http://dx.doi.org/10.1038/srep22619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778051PMC
March 2016

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies.

Cancer Epidemiol Biomarkers Prev 2016 Feb 24;25(2):407-16. Epub 2015 Nov 24.

Microbiome Program, Center for Individualized Medicine, Mayo Clinic, Rochester, Minnesota. Health Sciences Research, Mayo Clinic, Rochester, Minnesota. Department of Surgery, Mayo Clinic, Rochester, Minnesota. Biomedical Engineering and Physiology, Mayo College, Rochester, Minnesota.

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http://dx.doi.org/10.1158/1055-9965.EPI-15-0951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4821594PMC
February 2016

Sex, body mass index, and dietary fiber intake influence the human gut microbiome.

PLoS One 2015 15;10(4):e0124599. Epub 2015 Apr 15.

Department of Population Health, New York University School of Medicine, New York, New York, United States of America; New York University Perlmutter Cancer Center, New York, New York, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0124599PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4398427PMC
January 2016

The microbiome quality control project: baseline study design and future directions.

Genome Biol 2015 Dec 9;16:276. Epub 2015 Dec 9.

Department of Biostatistics, Harvard School of Public Health, Boston, MA, 02115, USA.

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http://dx.doi.org/10.1186/s13059-015-0841-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4674991PMC
December 2015

Intake of Meat Mutagens and Risk of Prostate Cancer in a Cohort of U.S. Health Professionals.

Cancer Epidemiol Biomarkers Prev 2015 Oct 29;24(10):1557-63. Epub 2015 Jul 29.

Department of Nutrition, Harvard School of Public Health, Boston, Massachusetts.

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http://dx.doi.org/10.1158/1055-9965.EPI-15-0068-TDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4592459PMC
October 2015

Serum biomarkers of habitual coffee consumption may provide insight into the mechanism underlying the association between coffee consumption and colorectal cancer.

Am J Clin Nutr 2015 May 11;101(5):1000-11. Epub 2015 Mar 11.

From the Nutritional Epidemiology Branch (KAG, EL, SCM, QX, NDF, and RS), the Biostatistics Branch (JNS), and the Occupational and Environmental Epidemiology Branch (W-YH), Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, Bethesda, MD; the Innovation Center for Biomedical Informatics and Department of Oncology, Georgetown University Medical Center, Washington, DC (SMB); Information Management Services Inc., Silver Spring, MD (XX); and the Department of Epidemiology and Biostatistics, School of Public Health, Faculty of Medicine, Imperial College London, St. Mary's Campus, Norfolk Place, London, United Kingdom (AJC).

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http://dx.doi.org/10.3945/ajcn.114.096099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4409687PMC
May 2015

Coffee drinking and cutaneous melanoma risk in the NIH-AARP diet and health study.

J Natl Cancer Inst 2015 Feb 20;107(2). Epub 2015 Jan 20.

Yale School of Public Health, New Haven, CT (EL, FMS, STM); Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Rockville, MD (EL, NDF, BIG, RS); AARP (retired), Washington, D.C. (ARH); Yale Cancer Center, New Haven, CT (FMS, STM).

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http://dx.doi.org/10.1093/jnci/dju421DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4311176PMC
February 2015

Sweetened beverages, coffee, and tea and depression risk among older US adults.

PLoS One 2014 17;9(4):e94715. Epub 2014 Apr 17.

Epidemiology Branch, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0094715PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3990543PMC
January 2015

Dietary consumption of advanced glycation end products and pancreatic cancer in the prospective NIH-AARP Diet and Health Study.

Am J Clin Nutr 2015 Jan 19;101(1):126-34. Epub 2014 Nov 19.

From the Sections of Gastroenterology and Hepatology (LJ and LC) and Health Services Research (LJ, ZD, and LC), Department of Medicine, Baylor College of Medicine, Houston, TX; the Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics (RS-S and RS) and the Applied Research Program, Division of Cancer Control and Population Sciences (AFS), National Cancer Institute, NIH, Rockville, MD; Westat, Rockville, MD (TPZ); Information Management Services, Rockville, MD (LK and AR); the Department of Epidemiology and Biostatistics, School of Public Health, Faculty of Medicine, Imperial College London, London, United Kingdom (AJC); the Division of Experimental Diabetes and Aging, Mount Sinai School of Medicine, New York, NY (HV and GS); and AARP, Washington, DC (AH).

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http://dx.doi.org/10.3945/ajcn.114.098061DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266882PMC
January 2015

Sources of variability in metabolite measurements from urinary samples.

PLoS One 2014 1;9(5):e95749. Epub 2014 May 1.

Biostatistics Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Rockville, Maryland, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0095749PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4006796PMC
December 2014

Inverse associations of total and decaffeinated coffee with liver enzyme levels in National Health and Nutrition Examination Survey 1999-2010.

Hepatology 2014 Dec 30;60(6):2091-8. Epub 2014 Oct 30.

Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD.

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http://dx.doi.org/10.1002/hep.27367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4245376PMC
December 2014

A prospective study of serum metabolites and colorectal cancer risk.

Cancer 2014 Oct 3;120(19):3049-57. Epub 2014 Jun 3.

Department of Epidemiology and Biostatistics, School of Public Health, Faculty of Medicine, Imperial College London, London, United Kingdom.

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http://dx.doi.org/10.1002/cncr.28799DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5819589PMC
October 2014

Urinary 1-methylhistidine and 3-methylhistidine, meat intake, and colorectal adenoma risk.

Eur J Cancer Prev 2014 Sep;23(5):385-90

Department of Health and Human Services, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Rockville, Maryland, USA.

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https://insights.ovid.com/crossref?an=00008469-201409000-000
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http://dx.doi.org/10.1097/CEJ.0000000000000027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4121566PMC
September 2014

Fecal metabolomics: assay performance and association with colorectal cancer.

Carcinogenesis 2014 Sep 18;35(9):2089-96. Epub 2014 Jul 18.

Epidemiology and Biostatistics Program, Division of Cancer Epidemiology and Genetics, National Cancer Institute, 9609 Medical Center Drive, Bethesda, MD 20892-9704, USA, Information Management Services, 6110 Executive Boulevard, Rockville, MD 20852, USA and Division of Epidemiology, Department of Population Health, New York University School of Medicine, 650 First Avenue, #518, New York, NY 10016, USA.

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http://dx.doi.org/10.1093/carcin/bgu131DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4146421PMC
September 2014

Metabolites of tobacco smoking and colorectal cancer risk.

Carcinogenesis 2014 Jul 19;35(7):1516-22. Epub 2014 Mar 19.

Nutritional Epidemiology Branch, Biostatistics Branch, Genetic Epidemiology Branch and Occupational and Environmental Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Rockville, MD 20850, USA.

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http://carcin.oxfordjournals.org/content/early/2014/04/12/ca
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http://www.carcin.oxfordjournals.org/cgi/doi/10.1093/carcin/
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http://dx.doi.org/10.1093/carcin/bgu071DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4076812PMC
July 2014

Metabolomics in nutritional epidemiology: identifying metabolites associated with diet and quantifying their potential to uncover diet-disease relations in populations.

Am J Clin Nutr 2014 Jul 16;100(1):208-17. Epub 2014 Apr 16.

From the Nutritional Epidemiology Branch (KAG, SCM, QX, RZS-S, RS, and AJC), the Biostatistics Branch (JNS), and the Occupational and Environmental Epidemiology Branch (W-YH), Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, Bethesda, MD.

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http://dx.doi.org/10.3945/ajcn.113.078758DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4144099PMC
July 2014

Meat, dairy, and cancer.

Am J Clin Nutr 2014 Jul 21;100 Suppl 1:386S-93S. Epub 2014 May 21.

From the Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, Bethesda, MD.

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http://dx.doi.org/10.3945/ajcn.113.071597DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4144110PMC
July 2014

Polymorphisms in xenobiotic metabolizing genes, intakes of heterocyclic amines and red meat, and postmenopausal breast cancer.

Nutr Cancer 2013 7;65(8):1122-31. Epub 2013 Oct 7.

a Channing Laboratory, Department of Medicine , Brigham and Women's Hospital and Harvard Medical School , Boston , Massachusetts , USA.

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http://dx.doi.org/10.1080/01635581.2013.824991DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3830653PMC
June 2014

Dietary iron, iron homeostatic gene polymorphisms and the risk of advanced colorectal adenoma and cancer.

Carcinogenesis 2014 Jun 17;35(6):1276-83. Epub 2014 Feb 17.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20892, USA.

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http://dx.doi.org/10.1093/carcin/bgu028DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4043236PMC
June 2014

Development of a field-friendly automated dietary assessment tool and nutrient database for India.

Br J Nutr 2014 Jan;111(1):160-71

Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, 6120 Executive Boulevard, Suite 320, Rockville, MD 20852, USA.

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http://www.journals.cambridge.org/abstract_S0007114513001864
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http://dx.doi.org/10.1017/S0007114513001864DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5652307PMC
January 2014

Testing multiple biological mediators simultaneously.

Bioinformatics 2014 Jan 6;30(2):214-20. Epub 2013 Nov 6.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD, USA.

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http://dx.doi.org/10.1093/bioinformatics/btt633DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3892685PMC
January 2014

Meat-related compounds and colorectal cancer risk by anatomical subsite.

Nutr Cancer 2013 ;65(2):202-26

Cancer Prevention Fellowship Program, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, USA.

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http://dx.doi.org/10.1080/01635581.2013.756534DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3584417PMC
December 2013

Human gut microbiome and risk for colorectal cancer.

J Natl Cancer Inst 2013 Dec 6;105(24):1907-11. Epub 2013 Dec 6.

Affiliations of authors: Division of Epidemiology, Department of Population Health (JA, CD, JW, RBH), Department of Pathology (ZP), and Department of Medicine (ZP, LY), New York University School of Medicine, New York, NY; New York University Cancer Institute, New York, NY (JA, ZP, CD, JW, RBH); Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD (RS, JS, JJG); Department of Pathology and Laboratory Medicine, New York Veterans Affairs Medical Center, New York, NY (ZP).

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http://dx.doi.org/10.1093/jnci/djt300DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3866154PMC
December 2013

Polymorphisms in metabolism/antioxidant genes may mediate the effect of dietary intake on pancreatic cancer risk.

Pancreas 2013 Oct;42(7):1043-53

From the Divisions of *Epidemiology, and †Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, Rochester, MN; ‡Department of Epidemiology, National Institutes of Health, Bethesda, MD; §Department of Epidemiology and Community Health, University of Minnesota, Minneapolis, MN; and ∥Division of Cancer Epidemiology and Genetics, National Cancer Institute, Bethesda, MD.

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http://pdfs.journals.lww.com/pancreasjournal/2013/10000/Poly
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http://dx.doi.org/10.1097/MPA.0b013e3182968e00DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3779344PMC
October 2013

Coffee consumption and the risk of overall and fatal prostate cancer in the NIH-AARP Diet and Health Study.

Cancer Causes Control 2013 Aug 17;24(8):1527-34. Epub 2013 May 17.

Department of Nutrition, Harvard School of Public Health, 655 Huntington Avenue, Boston, MA 02115, USA.

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http://dx.doi.org/10.1007/s10552-013-0229-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3717413PMC
August 2013

Meat-related mutagens and pancreatic cancer: null results from a clinic-based case-control study.

Cancer Epidemiol Biomarkers Prev 2013 Jul 30;22(7):1336-9. Epub 2013 Apr 30.

Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1158/1055-9965.EPI-13-0343DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3702664PMC
July 2013

Soluble receptor for advanced glycation end products and risk of liver cancer.

Hepatology 2013 Jun 14;57(6):2338-45. Epub 2013 May 14.

Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.

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http://dx.doi.org/10.1002/hep.26264DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3644530PMC
June 2013

Nutrients from fruit and vegetable consumption reduce the risk of pancreatic cancer.

J Gastrointest Cancer 2013 Jun;44(2):152-61

Division of Epidemiology, Department of Health Sciences Research, Mayo Clinic, 200 First Street SW, Rochester, MN 55905, USA.

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http://dx.doi.org/10.1007/s12029-012-9441-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3694591PMC
June 2013

Intake of fiber and fiber-rich plant foods is associated with a lower risk of renal cell carcinoma in a large US cohort.

Am J Clin Nutr 2013 May 20;97(5):1036-43. Epub 2013 Mar 20.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD, USA.

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http://dx.doi.org/10.3945/ajcn.112.045351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3628376PMC
May 2013

Contribution of behavioral risk factors and obesity to socioeconomic differences in colorectal cancer incidence.

J Natl Cancer Inst 2012 Sep 5;104(18):1353-62. Epub 2012 Sep 5.

Department of Family Medicine and Community Health, University of Pennsylvania Perelman School of Medicine, 2 Gates, 3400 Spruce St, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1093/jnci/djs346DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3529596PMC
September 2012

Comparability and repeatability of methods for estimating the dietary intake of the heterocyclic amine contaminant 2-amino-1-methyl-6-phenylimidazo[4,5b]pyridine (PhIP).

Food Addit Contam Part A Chem Anal Control Expo Risk Assess 2012 Aug 9;29(8):1202-11. Epub 2012 May 9.

Department of Environmental Health Sciences, Johns Hopkins Bloomberg School of Public Health, 615 N. Wolfe St., Baltimore, MD, USA.

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http://www.tandfonline.com/doi/abs/10.1080/19440049.2012.682
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http://dx.doi.org/10.1080/19440049.2012.682657DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3412362PMC
August 2012

Caffeinated and decaffeinated coffee and tea intakes and risk of colorectal cancer in a large prospective study.

Am J Clin Nutr 2012 Aug 13;96(2):374-81. Epub 2012 Jun 13.

Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, Rockville, MD, USA.

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http://dx.doi.org/10.3945/ajcn.111.031328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3396445PMC
August 2012

Meat-related mutagen exposure, xenobiotic metabolizing gene polymorphisms and the risk of advanced colorectal adenoma and cancer.

Carcinogenesis 2012 Jul 2;33(7):1332-9. Epub 2012 May 2.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services Bethesda, MD, USA.

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http://dx.doi.org/10.1093/carcin/bgs158DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3499048PMC
July 2012

Socioeconomic status, healthcare density, and risk of prostate cancer among African American and Caucasian men in a large prospective study.

Cancer Causes Control 2012 Jul 22;23(7):1185-91. Epub 2012 May 22.

Division of Cancer Epidemiology and Genetics, Department of Health and Human Services, National Cancer Institute, National Institutes of Health, Bethesda, MD 20852, USA.

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http://dx.doi.org/10.1007/s10552-012-9988-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3405544PMC
July 2012

Socioeconomic status and the risk of colorectal cancer: an analysis of more than a half million adults in the National Institutes of Health-AARP Diet and Health Study.

Cancer 2012 Jul 3;118(14):3636-44. Epub 2012 Jan 3.

Department of Family Medicine and Community Health and Quantitative Health Sciences, University of Massachusetts Medical School, Worcester, MA 01655, USA.

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http://dx.doi.org/10.1002/cncr.26677DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422782PMC
July 2012

Developing a heme iron database for meats according to meat type, cooking method and doneness level.

Food Nutr Sci 2012 Jul;3(7):905-913

Nutritional Epidemiology Branch, Division of Cancer Epidemiology and Genetics, National Cancer Institute, 6120 Executive Blvd, Rockville, MD, 20852.

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http://dx.doi.org/10.4236/fns.2012.37120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583546PMC
July 2012

Caffeine intake, smoking, and risk of Parkinson disease in men and women.

Am J Epidemiol 2012 Jun 13;175(11):1200-7. Epub 2012 Apr 13.

Epidemiology Branch, National Institute of Environmental Health Sciences, Research Triangle Park, North Carolina 27709, USA.

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http://dx.doi.org/10.1093/aje/kwr451DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370885PMC
June 2012

Meat intake is not associated with risk of non-Hodgkin lymphoma in a large prospective cohort of U.S. men and women.

J Nutr 2012 Jun 25;142(6):1074-80. Epub 2012 Apr 25.

National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Rockville, MD, USA.

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http://dx.doi.org/10.3945/jn.112.158113DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3349978PMC
June 2012

Coffee, tea, soda, and caffeine intake in relation to risk of adult glioma in the NIH-AARP Diet and Health Study.

Cancer Causes Control 2012 May 29;23(5):757-68. Epub 2012 Mar 29.

Yale School of Public Health, Yale School of Medicine, New Haven, CT, USA.

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http://dx.doi.org/10.1007/s10552-012-9945-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381735PMC
May 2012

Association of coffee drinking with total and cause-specific mortality.

N Engl J Med 2012 May;366(20):1891-904

Division of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Rockville, MD 20852, USA.

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http://dx.doi.org/10.1056/NEJMoa1112010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3439152PMC
May 2012

Large prospective investigation of meat intake, related mutagens, and risk of renal cell carcinoma.

Am J Clin Nutr 2012 Jan 14;95(1):155-62. Epub 2011 Dec 14.

Division of Cancer Epidemiology and Genetics, National Cancer Institute, NIH, Department of Health and Human Services, Rockville, MD, USA.

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http://dx.doi.org/10.3945/ajcn.111.019364DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3238458PMC
January 2012