Rami Kantor

Rami Kantor

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Rami Kantor

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Measurement error and variant-calling in deep Illumina sequencing of HIV.

Bioinformatics 2019 Jun;35(12):2029-2035

Division of Infectious Diseases, The Alpert Medical School, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1093/bioinformatics/bty919DOI Listing
June 2019

Classification using ensemble learning under weighted misclassification loss.

Stat Med 2019 May 4;38(11):2002-2012. Epub 2019 Jan 4.

Department of Biostatistics, Brown University, Providence, RI.

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http://dx.doi.org/10.1002/sim.8082DOI Listing
May 2019

Accumulated pre-switch resistance to more recently introduced one-pill-once-a-day antiretroviral regimens impacts HIV-1 virologic outcome.

J Clin Virol 2018 08 21;105:11-17. Epub 2018 May 21.

Division of Infectious Diseases, Brown University Alpert Medical School, 164 Summit Avenue, Providence RI 02906, USA.

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http://dx.doi.org/10.1016/j.jcv.2018.05.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6054572PMC
August 2018

Regional Challenges in the Prevention of Human Immunodeficiency Virus Drug Resistance.

J Infect Dis 2017 12;216(suppl_9):S816-S819

Division of Infectious Diseases, Department of Medicine, Brown University Alpert Medical School.

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http://dx.doi.org/10.1093/infdis/jix408DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5853282PMC
December 2017

Improved HIV-1 Viral Load Monitoring Capacity Using Pooled Testing With Marker-Assisted Deconvolution.

J Acquir Immune Defic Syndr 2017 08;75(5):580-587

*Department of Biostatistics and Center for Statistical Sciences, Brown University School of Public Health, Providence, RI; †Academic Model Providing Access to Healthcare (AMPATH), Eldoret, Kenya; Departments of ‡Statistics and Data Sciences; §Integrative Biology, University of Texas at Austin, Austin, TX; ‖Division of Infectious Diseases, the Alpert Medical School of Brown University, Providence, RI; and ¶Department of Medicine, School of Medicine, College of Health Sciences, Moi University, Eldoret, Kenya.

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http://dx.doi.org/10.1097/QAI.0000000000001424DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5503773PMC
August 2017

Phylogenetic Investigation of a Statewide HIV-1 Epidemic Reveals Ongoing and Active Transmission Networks Among Men Who Have Sex With Men.

J Acquir Immune Defic Syndr 2015 Dec;70(4):428-35

*Division of Infectious Diseases, Department of Medicine, Alpert Medical School of Brown University, Providence, RI; †Center for Statistical Sciences, Brown University School of Public Health, Providence, RI; ‡Department of Pathology, University of Florida, Gainesville, FL; and §Fenway Health, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA.

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http://dx.doi.org/10.1097/QAI.0000000000000786DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624575PMC
December 2015

One-Step Ligation on RNA Amplification for the Detection of Point Mutations.

J Mol Diagn 2015 Nov 29;17(6):679-88. Epub 2015 Aug 29.

Center for Biomedical Engineering and the School of Engineering and Medical Sciences, Brown University, Providence, Rhode Island. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S15251578150014
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http://dx.doi.org/10.1016/j.jmoldx.2015.07.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4630173PMC
November 2015

Transmission Networks of HIV-1 Among Men Who Have Sex With Men in East and Southeast Asia.

J Acquir Immune Defic Syndr 2015 Sep;70(1):e28-30

*Centre of Excellence for Research in AIDS (CERiA), Department of Medicine, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia †Division of Infectious Diseases, Department of Medicine, Alpert Medical School, Brown University, Providence, RI ‡Department of Medicine, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand §AIDS Research Center, National Institute of Infectious Diseases, Toyama, Japan ‖Queen Elizabeth Hospital, Hong Kong, China ¶Research Institute for Tropical Medicine, Manila, Philippines #HIV-NAT/Thai Red Cross AIDS Research Centre, Bangkok, Thailand **Research Institute for Health Sciences, Chiang Mai University, Chiang Mai, Thailand ††Hospital Sungai Buloh, Kuala Lumpur, Malaysia ‡‡Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand §§Chiangrai Prachanukroh Hospital, Chiang Rai, Thailand.

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http://dx.doi.org/10.1097/QAI.0000000000000614DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556551PMC
September 2015

HIV diversity and drug resistance from plasma and non-plasma analytes in a large treatment programme in western Kenya.

J Int AIDS Soc 2014 18;17:19262. Epub 2014 Nov 18.

Department of Medicine, School of Medicine, College of Health Sciences, Moi University, Eldoret, Kenya; Academic Model Providing Access To Health Care (AMPATH), Eldoret, Kenya.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4238965PMC
http://dx.doi.org/10.7448/IAS.17.1.19262DOI Listing
June 2015

Antiretroviral treatment failure, drug resistance, and subtype diversity in the only pediatric HIV clinic in Rhode Island.

Clin Infect Dis 2015 May 30;60(9):1426-35. Epub 2015 Jan 30.

Division of Infectious Diseases, Brown University, Providence, Rhode Island.

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http://dx.doi.org/10.1093/cid/civ058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4415056PMC
May 2015

Transmitted HIV drug resistance at the Thai Red Cross anonymous clinic in Bangkok: results from three consecutive years of annual surveillance.

J Antimicrob Chemother 2015 Apr 18;70(4):1146-9. Epub 2014 Dec 18.

Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand The Thai Red Cross AIDS Research Centre, Bangkok, Thailand

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http://dx.doi.org/10.1093/jac/dku499DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375389PMC
April 2015

HIV-1 RNA levels and antiretroviral drug resistance in blood and non-blood compartments from HIV-1-infected men and women enrolled in AIDS clinical trials group study A5077.

PLoS One 2014 3;9(4):e93537. Epub 2014 Apr 3.

Department of Laboratory Medicine and Division of Infectious Diseases, Department of Medicine, University of Washington School of Medicine, Seattle, Washington, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0093537PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3974754PMC
January 2015

Phylogenetic and geospatial evaluation of HIV-1 subtype diversity at the largest HIV center in Rhode Island.

Infect Genet Evol 2014 Dec 8;28:358-66. Epub 2014 Apr 8.

Division of Infectious Diseases, Department of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1016/j.meegid.2014.03.027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4190103PMC
December 2014

Transmitted drug resistance and antiretroviral treatment outcomes in non-subtype B HIV-1-infected patients in South East Asia.

J Acquir Immune Defic Syndr 2014 May;66(1):74-9

*HIV-NAT, Thai Red Cross AIDS Research Centre, Bangkok, Thailand; †Faculty of Medicine, Chulalongkorn University, Bangkok, Thailand; ‡The Kirby Institute, Faculty of Medicine, University of New South Wales, Sydney, Australia; §Faculty of Medicine, Ramathibodi Hospital, Mahidol University, Bangkok, Thailand; ‖YRG Centre for AIDS Research and Education, Chennai, India; ¶Queen Elizabeth Hospital, Hong Kong, China; #Research Institute for Health Sciences, Chiang Mai University, Chiang Mai, Thailand; **Chiangrai Prachanukroh Hospital, Chiang Rai, Thailand; ††Hospital Sungai Buloh, Kuala Lumpur, Malaysia; ‡‡University of Malaya, Kuala Lumpur, Malaysia; §§Hospital Raja Perempuan Zainab II, Kota Bharu, Malaysia; ‖‖Research Institute for Tropical Medicine, Manila, Philippines; ¶¶Faculty of Medicine, Udayana University and Sanglah Hospital, Bali, Indonesia; ##Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand; ***TREAT Asia, amfAR-The Foundation for AIDS Research, Bangkok, Thailand; and †††Brown University Alpert Medical School, Providence, RI.

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http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:land
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http://dx.doi.org/10.1097/QAI.0000000000000108DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4074771PMC
May 2014

The centrality of laboratory services in the HIV treatment and prevention cascade: The need for effective linkages and referrals in resource-limited settings.

AIDS Patient Care STDS 2014 May 17;28(5):268-73. Epub 2014 Apr 17.

1 Division of Global HIV/AIDS, Centers for Disease Control and Prevention Caribbean Regional Office , Barbados .

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http://www.liebertpub.com/doi/10.1089/apc.2013.0356
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http://dx.doi.org/10.1089/apc.2013.0356DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826026PMC
May 2014

Virulence profile: Rami Kantor.

Authors:
Rami Kantor

Virulence 2014 May 7;5(4):581-4. Epub 2014 May 7.

Division of Infectious Diseases; Brown University Alpert Medical School; Providence, RI USA.

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http://dx.doi.org/10.4161/viru.29128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4063819PMC
May 2014

Effects of political conflict-induced treatment interruptions on HIV drug resistance.

AIDS Rev 2013 Jan-Mar;15(1):15-24

Brown University, Providence, RI 02908, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3774601PMC
November 2013

Research components of the Brown Kenya Program: a personal and professional perspective.

Authors:
Rami Kantor

R I Med J (2013) 2013 Oct 1;96(10):16-9. Epub 2013 Oct 1.

Director of Research for the Brown Kenya Program and an Associate Professor of Medicine at the Alpert Medical School at Brown University. He is an infectious disease specialist.

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October 2013

Extensive drug resistance in HIV-infected Cambodian children who are undetected as failing first-line antiretroviral therapy by WHO 2010 guidelines.

AIDS Res Hum Retroviruses 2013 Jul 27;29(7):985-92. Epub 2013 Apr 27.

Division of Infectious Diseases, Alpert Medical School, Brown University, Providence, RI 02906, USA.

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http://dx.doi.org/10.1089/aid.2013.0025DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3685690PMC
July 2013

QColors: an algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads.

In Silico Biol 2011-2012;11(5-6):193-201

Division of Infectious Disease, Computer Science Department, Brown University, Box 1910, Providence, RI 02912, USA.

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http://dx.doi.org/10.3233/ISB-2012-0454DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5530257PMC
May 2013

Detection of HIV-1 minority variants containing the K103N drug-resistance mutation using a simple method to amplify RNA targets (SMART).

J Mol Diagn 2013 May 29;15(3):401-12. Epub 2013 Mar 29.

Center for Biomedical Engineering, School of Engineering, Alpert Medical School, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1016/j.jmoldx.2013.02.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3644729PMC
May 2013

Persistent genital tract HIV-1 RNA shedding after change in treatment regimens in antiretroviral-experienced women with detectable plasma viral load.

J Womens Health (Larchmt) 2013 Apr 26;22(4):330-8. Epub 2013 Mar 26.

Department of Obstetrics and Gynecology, Women & Infants Hospital of Rhode Island, Alpert Medical School, Brown University, Providence, RI, USA.

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http://dx.doi.org/10.1089/jwh.2012.3849DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3627435PMC
April 2013

Short communication: new HIV infections at Southern New England academic institutions: implications for prevention.

AIDS Res Hum Retroviruses 2013 Jan 25;29(1):25-9. Epub 2012 Jul 25.

Division of Infectious Diseases, The Warren Alpert Medical School of Brown University, Providence, RI 02904, USA.

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http://dx.doi.org/10.1089/AID.2012.0130DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3537304PMC
January 2013

Optimal Allocation of Gold Standard Testing under Constrained Availability: Application to Assessment of HIV Treatment Failure.

J Am Stat Assoc 2013 Jan;108(504):1173-1188

Associate Professor of Medicine, Division of Infectious Diseases, the Alpert Medical School of Brown University, Providence, RI 02912.

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http://dx.doi.org/10.1080/01621459.2013.810149DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3963362PMC
January 2013

Low prevalence of transmitted K65R and other tenofovir resistance mutations across different HIV-1 subtypes: implications for pre-exposure prophylaxis.

J Int AIDS Soc 2012 Oct 15;15(2):17701. Epub 2012 Oct 15.

Division of Infectious Diseases, The Warren Alpert Medical School of Brown University, Providence, Rhode Island, United States.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3494163PMC
http://dx.doi.org/10.7448/IAS.15.2.17701DOI Listing
October 2012

Sequence quality analysis tool for HIV type 1 protease and reverse transcriptase.

AIDS Res Hum Retroviruses 2012 Aug 26;28(8):894-901. Epub 2011 Oct 26.

Center for Statistical Sciences, Brown University, Providence, Rhode Island 02906, USA.

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http://dx.doi.org/10.1089/aid.2011.0120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399557PMC
August 2012

Interrupting transmission of HIV and other sexually transmitted infections in Rhode Island.

Med Health R I 2012 Aug;95(8):241-4

Division of Pediatric Infectious Diseases and Adult Infectious Diseases, Warren Alpert Medical School, Brown University, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3770840PMC
August 2012

Short communication: Transmitted drug resistance and molecular epidemiology in antiretroviral naive HIV type 1-infected patients in Rhode Island.

AIDS Res Hum Retroviruses 2011 Mar 18;27(3):275-81. Epub 2010 Oct 18.

Division of Infectious Disease, The Warren Alpert Medical School of Brown University, Providence, Rhode Island, USA.

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http://dx.doi.org/10.1089/aid.2010.0198DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3048815PMC
March 2011

Envelope coreceptor tropism, drug resistance, and viral evolution among subtype C HIV-1-infected individuals receiving nonsuppressive antiretroviral therapy.

J Acquir Immune Defic Syndr 2009 Jan;50(1):9-18

Department of Medicine, Division of Infectious Diseases, Stanford University Medical Center, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1097/QAI.0b013e31818ffdffDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818215PMC
January 2009

HIV type 1 subtype C drug resistance among pediatric and adult South African patients failing antiretroviral therapy.

AIDS Res Hum Retroviruses 2008 Nov;24(11):1449-54

National Institute for Communicable Diseases, AIDS Virus Research Unit, Johannesburg, South Africa.

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http://dx.doi.org/10.1089/aid.2008.0180DOI Listing
November 2008

HIV-2 diagnosis and quantification in high-risk patients.

AIDS Res Ther 2008 Aug 14;5:18. Epub 2008 Aug 14.

Department of Internal Medicine, Warren Alpert Medical School of Brown, University and Rhode Island Hospital, Providence, RI 02903, USA.

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http://dx.doi.org/10.1186/1742-6405-5-18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2529329PMC
August 2008

Drug resistance in plasma and breast milk after single-dose nevirapine in subtype C HIV type 1: population and clonal sequence analysis.

AIDS Res Hum Retroviruses 2007 Aug;23(8):1055-61

Department of Medicine and Infectious Diseases, Stanford University, Stanford, California 94305, USA.

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http://dx.doi.org/10.1089/aid.2007.0045DOI Listing
August 2007

Impact of HIV-1 pol diversity on drug resistance and its clinical implications.

Authors:
Rami Kantor

Curr Opin Infect Dis 2006 Dec;19(6):594-606

Division of Infectious Diseases, The Miriam Hospital, Providence, Rhode Island 02906, USA.

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http://dx.doi.org/10.1097/QCO.0b013e3280109122DOI Listing
December 2006

Breast-milk shedding of drug-resistant HIV-1 subtype C in women exposed to single-dose nevirapine.

J Infect Dis 2005 Oct 23;192(7):1260-4. Epub 2005 Aug 23.

Center for AIDS Research, Division of Infectious Disease, Stanford University School of Medicine, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1086/444424DOI Listing
October 2005

The HIV-1 Non-subtype B Workgroup: An International Collaboration for the Collection and Analysis of HIV-1 Non-subtype B Data.

J Int AIDS Soc 2005 Feb 23;7(1):71. Epub 2005 Feb 23.

Assistant Professor (Research), Division of Infectious Diseases, Brown University, Providence, Rhode Island.

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http://dx.doi.org/10.1186/1758-2652-7-1-71DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2740791PMC
February 2005

The HIV-1 Non-subtype B Workgroup: an international collaboration for the collection and analysis of HIV-1 non-subtype B data.

MedGenMed 2005 Feb 23;7(1):71. Epub 2005 Feb 23.

Division of Infectious Diseases, Brown University, Providence, Rhode Island, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1681398PMC
February 2005

Approaches for guideline versioning using GLIF.

AMIA Annu Symp Proc 2003 :509-13

Stanford Medical Informatics, Stanford University School of Medicine, CA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1480025PMC
December 2004

K103N mutation in antiretroviral therapy-naive African patients infected with HIV type 1.

Clin Infect Dis 2004 Aug 30;39(4):575-8. Epub 2004 Jul 30.

Department of Infectious Diseases, University of Minnesota/Hennepin County Medical Center, Minneapolis, Minnesota 55455, USA.

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http://dx.doi.org/10.1086/422519DOI Listing
August 2004

Drug resistance in non-subtype B HIV-1.

J Clin Virol 2004 Mar;29(3):152-9

Division of Infectious Diseases, Center for AIDS Research, Stanford University Medical Center, 300 Pasteur Drive, room S-156, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/S1386-6532(03)00115-XDOI Listing
March 2004

Polymorphism in HIV-1 non-subtype B protease and reverse transcriptase and its potential impact on drug susceptibility and drug resistance evolution.

AIDS Rev 2003 Jan-Mar;5(1):25-35

Division of Infectious Diseases and AIDS Research, Stanford University, Stanford, CA, USA.

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September 2003

A mutated CCR5 gene may have favorable prognostic implications in MS.

Neurology 2003 Jul;61(2):238-40

Division of Infectious Diseases, Sheba Medical Center, Tel-Hashomer, Israel.

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http://dx.doi.org/10.1212/01.wnl.0000069921.20347.9eDOI Listing
July 2003

Human immunodeficiency virus reverse transcriptase and protease sequence database.

Nucleic Acids Res 2003 Jan;31(1):298-303

Division of Infectious Diseases, Department of Medicine, Stanford University, Stanford, CA 94305, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC165547PMC
http://dx.doi.org/10.1093/nar/gkg100DOI Listing
January 2003

The Genetic Basis of HIV-1 Resistance to Reverse Transcriptase and Protease Inhibitors.

AIDS Rev 2000 ;2(4):211-228

Division of Infectious Diseases and Geographic Medicine, Stanford University, Stanford, CA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2604813PMC
January 2000