Publications by authors named "Rama Balakrishnan"

25Publications

Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy.

Mol Cell 2017 Feb 26;65(4):761-774.e5. Epub 2017 Jan 26.

Department of Medicine, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address:

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February 2017

Standardized description of scientific evidence using the Evidence Ontology (ECO).

Database (Oxford) 2014 22;2014. Epub 2014 Jul 22.

Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Saccharomyces Genome Database, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK, Department of Epidemiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USAInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Genomics Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA, Saccharomyces Genome Database, Department of Genetics, Stanford University, Stanford, CA 94305, USA, Computational Biology and Bioinformatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD UK, Department of Epidemiology, University of Maryland School of Medicine, Baltimore, MD 21201, USA and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

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February 2015

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.

Database (Oxford) 2013 27;2013:bat062. Epub 2013 Aug 27.

Department of Cancer Research and Molecular Medicine, Norwegian University of Science and Technology, NTNU, N-7489 Trondheim, Norway.

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March 2014

A guide to best practices for Gene Ontology (GO) manual annotation.

Database (Oxford) 2013 9;2013:bat054. Epub 2013 Jul 9.

Saccharomyces Genome Database, Department of Genetics, Stanford University, 300 Pasteur Drive, MC-5477 Stanford, CA 94305, USA.

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October 2013

A gene ontology inferred from molecular networks.

Nat Biotechnol 2013 Jan;31(1):38-45

Department of Medicine, University of California San Diego, La Jolla, California, USA.

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January 2013

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations.

Database (Oxford) 2012 20;2012:bas001. Epub 2012 Mar 20.

Department of Genetics, Stanford University, Stanford, CA 94305-5120, USA.

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June 2012

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study.

Database (Oxford) 2011 15;2011:bar004. Epub 2011 Mar 15.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA.

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July 2011