Ralph Haygood

Ralph Haygood

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Ralph Haygood

Ralph Haygood

Publications by authors named "Ralph Haygood"

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20Publications

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Gene expression and adaptive noncoding changes during human evolution.

BMC Genomics 2017 06 5;18(1):435. Epub 2017 Jun 5.

Department of Biology, Duke University, Durham, NC, 27708, USA.

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http://dx.doi.org/10.1186/s12864-017-3831-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5460488PMC
June 2017

The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network.

PLoS Biol 2013 Oct 29;11(10):e1001696. Epub 2013 Oct 29.

Department of Biology, Duke University, Durham, North Carolina, United States of America.

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http://dx.doi.org/10.1371/journal.pbio.1001696DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3812118PMC
October 2013

Population genetics of cis-regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus.

Evol Dev 2012 Mar-Apr;14(2):152-67

Department of Biology and Institute for Genome Sciences & Policy, Duke University, Box 90338, Durham, NC 27708, USA.

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http://dx.doi.org/10.1111/j.1525-142X.2012.00532.xDOI Listing
February 2013

A potential role for glucose transporters in the evolution of human brain size.

Brain Behav Evol 2011 7;78(4):315-26. Epub 2011 Oct 7.

Biology Department, Duke University, Durham, NC, USA.

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http://dx.doi.org/10.1159/000329852DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3237107PMC
February 2012

Whole-genome positive selection and habitat-driven evolution in a shallow and a deep-sea urchin.

Genome Biol Evol 2010 8;2:800-14. Epub 2010 Oct 8.

Department of Biology, Hopkins Marine Station, Stanford University, USA.

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http://dx.doi.org/10.1093/gbe/evq063DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2975446PMC
February 2011

Contrasts between adaptive coding and noncoding changes during human evolution.

Proc Natl Acad Sci U S A 2010 Apr 12;107(17):7853-7. Epub 2010 Apr 12.

Biology Department and Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA.

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http://dx.doi.org/10.1073/pnas.0911249107DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2867918PMC
April 2010

Multiple Functional Variants in cis Modulate PDYN Expression.

Mol Biol Evol 2010 Feb 12;27(2):465-79. Epub 2009 Nov 12.

Institute for Genome Sciences & Policy, Duke University, USA.

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http://dx.doi.org/10.1093/molbev/msp276DOI Listing
February 2010

Functional consequences of genetic variation in primates on tyrosine hydroxylase (TH) expression in vitro.

Brain Res 2009 Sep 8;1288:1-8. Epub 2009 Jul 8.

Institute for Genome Sciences & Policy, Duke University, Durham 27708, USA; Department of Biology, Duke University, Durham 27708, USA.

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http://dx.doi.org/10.1016/j.brainres.2009.06.086DOI Listing
September 2009

Evolution of incompatibility-inducing microbes in subdivided host populations.

Evolution 2009 Feb 12;63(2):432-47. Epub 2008 Dec 12.

Department of Evolution and Ecology and Center for Population Biology, University of California, Davis, California 95616, USA.

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http://dx.doi.org/10.1111/j.1558-5646.2008.00550.xDOI Listing
February 2009

Evolutionary analysis of the cis-regulatory region of the spicule matrix gene SM50 in strongylocentrotid sea urchins.

Dev Biol 2008 Mar 18;315(2):567-78. Epub 2008 Jan 18.

Department of Biology, Denison University, Granville, OH 43023, USA.

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http://dx.doi.org/10.1016/j.ydbio.2008.01.007DOI Listing
March 2008

Migration load and the coexistence of ecologically similar sexuals and asexuals.

Am Nat 2007 Oct 8;170(4):567-72. Epub 2007 Aug 8.

Department of Biology, Gustavus Adolphus College, St. Peter, Minnesota 56082, USA.

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http://dx.doi.org/10.1086/521235DOI Listing
October 2007

When two is better than one.

Cell 2007 Oct;131(2):225-7

Institute for Genome Science and Policy, Duke University, Box 90338, Durham, NC 27708-0338, USA.

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http://dx.doi.org/10.1016/j.cell.2007.10.001DOI Listing
October 2007

Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.

Nat Genet 2007 Sep 12;39(9):1140-4. Epub 2007 Aug 12.

Biology Department, Duke University, Durham, North Carolina 27708, USA.

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http://dx.doi.org/10.1038/ng2104DOI Listing
September 2007

The genome of the sea urchin Strongylocentrotus purpuratus.

Authors:
Erica Sodergren George M Weinstock Eric H Davidson R Andrew Cameron Richard A Gibbs Robert C Angerer Lynne M Angerer Maria Ina Arnone David R Burgess Robert D Burke James A Coffman Michael Dean Maurice R Elphick Charles A Ettensohn Kathy R Foltz Amro Hamdoun Richard O Hynes William H Klein William Marzluff David R McClay Robert L Morris Arcady Mushegian Jonathan P Rast L Courtney Smith Michael C Thorndyke Victor D Vacquier Gary M Wessel Greg Wray Lan Zhang Christine G Elsik Olga Ermolaeva Wratko Hlavina Gretchen Hofmann Paul Kitts Melissa J Landrum Aaron J Mackey Donna Maglott Georgia Panopoulou Albert J Poustka Kim Pruitt Victor Sapojnikov Xingzhi Song Alexandre Souvorov Victor Solovyev Zheng Wei Charles A Whittaker Kim Worley K James Durbin Yufeng Shen Olivier Fedrigo David Garfield Ralph Haygood Alexander Primus Rahul Satija Tonya Severson Manuel L Gonzalez-Garay Andrew R Jackson Aleksandar Milosavljevic Mark Tong Christopher E Killian Brian T Livingston Fred H Wilt Nikki Adams Robert Bellé Seth Carbonneau Rocky Cheung Patrick Cormier Bertrand Cosson Jenifer Croce Antonio Fernandez-Guerra Anne-Marie Genevière Manisha Goel Hemant Kelkar Julia Morales Odile Mulner-Lorillon Anthony J Robertson Jared V Goldstone Bryan Cole David Epel Bert Gold Mark E Hahn Meredith Howard-Ashby Mark Scally John J Stegeman Erin L Allgood Jonah Cool Kyle M Judkins Shawn S McCafferty Ashlan M Musante Robert A Obar Amanda P Rawson Blair J Rossetti Ian R Gibbons Matthew P Hoffman Andrew Leone Sorin Istrail Stefan C Materna Manoj P Samanta Viktor Stolc Waraporn Tongprasit Qiang Tu Karl-Frederik Bergeron Bruce P Brandhorst James Whittle Kevin Berney David J Bottjer Cristina Calestani Kevin Peterson Elly Chow Qiu Autumn Yuan Eran Elhaik Dan Graur Justin T Reese Ian Bosdet Shin Heesun Marco A Marra Jacqueline Schein Michele K Anderson Virginia Brockton Katherine M Buckley Avis H Cohen Sebastian D Fugmann Taku Hibino Mariano Loza-Coll Audrey J Majeske Cynthia Messier Sham V Nair Zeev Pancer David P Terwilliger Cavit Agca Enrique Arboleda Nansheng Chen Allison M Churcher F Hallböök Glen W Humphrey Mohammed M Idris Takae Kiyama Shuguang Liang Dan Mellott Xiuqian Mu Greg Murray Robert P Olinski Florian Raible Matthew Rowe John S Taylor Kristin Tessmar-Raible D Wang Karen H Wilson Shunsuke Yaguchi Terry Gaasterland Blanca E Galindo Herath J Gunaratne Celina Juliano Masashi Kinukawa Gary W Moy Anna T Neill Mamoru Nomura Michael Raisch Anna Reade Michelle M Roux Jia L Song Yi-Hsien Su Ian K Townley Ekaterina Voronina Julian L Wong Gabriele Amore Margherita Branno Euan R Brown Vincenzo Cavalieri Véronique Duboc Louise Duloquin Constantin Flytzanis Christian Gache François Lapraz Thierry Lepage Annamaria Locascio Pedro Martinez Giorgio Matassi Valeria Matranga Ryan Range Francesca Rizzo Eric Röttinger Wendy Beane Cynthia Bradham Christine Byrum Tom Glenn Sofia Hussain Gerard Manning Esther Miranda Rebecca Thomason Katherine Walton Athula Wikramanayke Shu-Yu Wu Ronghui Xu C Titus Brown Lili Chen Rachel F Gray Pei Yun Lee Jongmin Nam Paola Oliveri Joel Smith Donna Muzny Stephanie Bell Joseph Chacko Andrew Cree Stacey Curry Clay Davis Huyen Dinh Shannon Dugan-Rocha Jerry Fowler Rachel Gill Cerrissa Hamilton Judith Hernandez Sandra Hines Jennifer Hume Laronda Jackson Angela Jolivet Christie Kovar Sandra Lee Lora Lewis George Miner Margaret Morgan Lynne V Nazareth Geoffrey Okwuonu David Parker Ling-Ling Pu Rachel Thorn Rita Wright

Science 2006 Nov;314(5801):941-52

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http://dx.doi.org/10.1126/science.1133609DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159423PMC
November 2006

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Mutation rate and the cost of complexity.

Authors:
Ralph Haygood

Mol Biol Evol 2006 May 9;23(5):957-63. Epub 2006 Feb 9.

Biology Department, Duke University, NC, USA.

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http://dx.doi.org/10.1093/molbev/msj104DOI Listing
May 2006

Sexual conflict and protein polymorphism.

Authors:
Ralph Haygood

Evolution 2004 Jul;58(7):1414-23

Department of Zoology, University of Wisconsin, Madison, Wisconsin 53706, USA.

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http://dx.doi.org/10.1111/j.0014-3820.2004.tb01723.xDOI Listing
July 2004

Consequences of recurrent gene flow from crops to wild relatives.

Proc Biol Sci 2003 Sep;270(1527):1879-86

Department of Zoology, University of Wisconsin, Madison, WI 53706, USA.

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http://dx.doi.org/10.1098/rspb.2003.2426DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1691463PMC
September 2003

Coexistence in MacArthur-style consumer-resource models.

Authors:
Ralph Haygood

Theor Popul Biol 2002 Mar;61(2):215-23

Center for Population Biology, University of California, Davis, California 95616, USA.

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http://dx.doi.org/10.1006/tpbi.2001.1566DOI Listing
March 2002