Raffaele A Calogero

Raffaele A Calogero

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Raffaele A Calogero

Raffaele A Calogero

Publications by authors named "Raffaele A Calogero"

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BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics.

BMC Bioinformatics 2019 Nov 22;20(Suppl 9):562. Epub 2019 Nov 22.

Department of Physics, University of Turin, Via Pietro Giuria 1, 10126, Torino, Italy.

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http://dx.doi.org/10.1186/s12859-019-3175-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6873652PMC
November 2019

MicroRNAs from saliva of anopheline mosquitoes mimic human endogenous miRNAs and may contribute to vector-host-pathogen interactions.

Sci Rep 2019 Feb 27;9(1):2955. Epub 2019 Feb 27.

Department of Public Health and Infectious Diseases, "Sapienza" University, Piazzale Aldo Moro 5, 00185, Rome, Italy.

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http://dx.doi.org/10.1038/s41598-019-39880-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393464PMC
February 2019

p190 RhoGAP promotes contact inhibition in epithelial cells by repressing YAP activity.

J Cell Biol 2018 09 22;217(9):3183-3201. Epub 2018 Jun 22.

GI Cell Biology Research Laboratory, Boston Children's Hospital and Harvard Medical School, Boston, MA

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http://dx.doi.org/10.1083/jcb.201710058DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6122998PMC
September 2018

SeqBox: RNAseq/ChIPseq reproducible analysis on a consumer game computer.

Bioinformatics 2018 03;34(5):871-872

Department of Molecular Biotechnology and Health Sciences, University of Torino, 10124 Turin, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btx674DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6030956PMC
March 2018

YAP Drives Growth by Controlling Transcriptional Pause Release from Dynamic Enhancers.

Mol Cell 2015 Oct 1;60(2):328-37. Epub 2015 Oct 1.

Stem Cell Program, Boston Children's Hospital, Boston, MA 02115, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Harvard Stem Cell Institute, Boston, MA 02115, USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10972765150069
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http://dx.doi.org/10.1016/j.molcel.2015.09.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4624327PMC
October 2015

Quantifying entire transcriptomes by aligned RNA-seq data.

Methods Mol Biol 2015 ;1269:163-72

Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, Torino, 10126, Italy,

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http://dx.doi.org/10.1007/978-1-4939-2291-8_10DOI Listing
September 2015

Bisphenol A effects on gene expression in adipocytes from children: association with metabolic disorders.

J Mol Endocrinol 2015 Jun 15;54(3):289-303. Epub 2015 Apr 15.

Department of Experimental MedicineSecond University of Naples, Via S. Maria di Costantinopoli 16, 80138 Naples, ItalyNational Laboratory of Endocrine DisruptorsINBB, Via P. Castellino 111, 80131 Naples, ItalyGene Expression and Molecular Genetics LaboratoryIBBR - CNR, UOS Napoli Via P. Castellino 111, 80131 Naples, ItalyDepartment of WomanChild and General and Specialized Surgery, Second University of Naples, Via Luigi De Crecchio 4, 80138 Naples, ItalyBioinformatics and Genomics UnitMBC Molecular Biotechnology Center, University of Turin, Via Nizza 52, 10126 Turin, ItalyBiophysics LaboratoryIGB - CNR, Via P. Castellino 111, 80131 Naples, Italy Department of Experimental MedicineSecond University of Naples, Via S. Maria di Costantinopoli 16, 80138 Naples, ItalyNational Laboratory of Endocrine DisruptorsINBB, Via P. Castellino 111, 80131 Naples, ItalyGene Expression and Molecular Genetics LaboratoryIBBR - CNR, UOS Napoli Via P. Castellino 111, 80131 Naples, ItalyDepartment of WomanChild and General and Specialized Surgery, Second University of Naples, Via Luigi De Crecchio 4, 80138 Naples, ItalyBioinformatics and Genomics UnitMBC Molecular Biotechnology Center, University of Turin, Via Nizza 52, 10126 Turin, ItalyBiophysics LaboratoryIGB - CNR, Via P. Castellino 111, 80131 Naples, Italy.

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http://dx.doi.org/10.1530/JME-14-0282DOI Listing
June 2015

Chimera: a Bioconductor package for secondary analysis of fusion products.

Bioinformatics 2014 Dec 6;30(24):3556-7. Epub 2014 Oct 6.

Department of Computer Sciences, University of Torino, C.so Svizzera 185, 10149 Torino, Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, 10126 Torino, Department of Translational Medicine, University of Piemonte Orientale Avogadro, Novara, Unit of Cancer Epidemiology, Department of Medical Sciences, University of Turin, Turin, Department of Computational and Quantitative Biology, UMR 7238 CNRS - Université Pierre et Marie Curie, Paris, France and Department of Mathematics and Computer Science, University of Udine, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btu662DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4253834PMC
December 2014

The Hippo transducer YAP1 transforms activated satellite cells and is a potent effector of embryonal rhabdomyosarcoma formation.

Cancer Cell 2014 Aug 31;26(2):273-87. Epub 2014 Jul 31.

Stem Cell Program, Boston Children's Hospital, Boston, MA 02115, USA; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA 02138, USA; Harvard Stem Cell Institute, Cambridge, MA 02138, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccr.2014.05.029DOI Listing
August 2014

Recombinant human lactoferrin induces human and mouse dendritic cell maturation via Toll-like receptors 2 and 4.

FASEB J 2014 Jan 2;28(1):416-29. Epub 2013 Oct 2.

1Molecular Biotechnology Center, Department of Molecular Biotechnology and Health Sciences, University of Torino, via Nizza 52, Torino 10126, Italy.

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http://dx.doi.org/10.1096/fj.13-229591DOI Listing
January 2014

State of art fusion-finder algorithms are suitable to detect transcription-induced chimeras in normal tissues?

BMC Bioinformatics 2013 22;14 Suppl 7:S2. Epub 2013 Apr 22.

University of Torino, Bioinformatics & Genomics unit, Molecular Biotechnology Center, Via Nizza 52, 10126 Torino, Italy.

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http://dx.doi.org/10.1186/1471-2105-14-S7-S2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3633050PMC
December 2013

Transcriptional profiling of endometriosis tissues identifies genes related to organogenesis defects.

J Cell Physiol 2013 Sep;228(9):1927-34

Gene Expression & Human Molecular Genetics Laboratory, Institute of Genetics and Biophysics A.B.T CNR, Naples, Italy.

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http://dx.doi.org/10.1002/jcp.24358DOI Listing
September 2013

State-of-the-art fusion-finder algorithms sensitivity and specificity.

Biomed Res Int 2013 17;2013:340620. Epub 2013 Feb 17.

Department of Molecular Biotechnology and Health Sciences, University of Torino, Via Nizza 52, 10126 Torino, Italy.

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http://www.hindawi.com/journals/bmri/2013/340620/
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http://dx.doi.org/10.1155/2013/340620DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3595110PMC
September 2013

miR-135b coordinates progression of ErbB2-driven mammary carcinomas through suppression of MID1 and MTCH2.

Am J Pathol 2013 Jun 23;182(6):2058-70. Epub 2013 Apr 23.

Department of Molecular Biotechnology and Health Sciences, Molecular Biotechnology Center, University of Torino, Torino, Italy.

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http://dx.doi.org/10.1016/j.ajpath.2013.02.046DOI Listing
June 2013

Large disclosing the nature of computational tools for the analysis of next generation sequencing data.

Curr Top Med Chem 2012 ;12(12):1320-30

Department of Computer Science, University of Torino, Torino, Italy.

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http://dx.doi.org/10.2174/156802612801319007DOI Listing
May 2013

Atorvastatin modulates anti-proliferative and pro-proliferative signals in Her2/neu-positive mammary cancer.

Biochem Pharmacol 2011 Nov 23;82(9):1079-89. Epub 2011 Jul 23.

Department of Genetics, Biology and Biochemistry, University of Torino, via Santena 5/bis, 10126, Torino, Italy.

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https://linkinghub.elsevier.com/retrieve/pii/S00062952110053
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http://dx.doi.org/10.1016/j.bcp.2011.07.079DOI Listing
November 2011

Involvement of inflammatory chemokines in survival of human monocytes fed with malarial pigment.

Infect Immun 2010 Nov 23;78(11):4912-21. Epub 2010 Aug 23.

Department of Genetics, Biology and Biochemistry, University of Torino Medical School, Turin, Italy.

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http://dx.doi.org/10.1128/IAI.00455-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2976350PMC
November 2010

Microarray probe expression measures, data normalization and statistical validation.

Comp Funct Genomics 2003 ;4(4):442-6

Department of Biological and Clinical Sciences, University of Torino, c/o Az. Ospedaliera S. Luigi Regione Gonzole 10, Orbassano (TO) 10043, Italy.

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http://dx.doi.org/10.1002/cfg.312DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2447370PMC
June 2010

Mesenchymal stem cell-derived microvesicles protect against acute tubular injury.

J Am Soc Nephrol 2009 May 23;20(5):1053-67. Epub 2009 Apr 23.

Department of Internal Medicine, Research Center for Experimental Medicine, University of Torino, Torino, Italy.

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http://dx.doi.org/10.1681/ASN.2008070798DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2676194PMC
May 2009

Regulation of leukemic cell differentiation and retinoid-induced gene expression by statins.

Mol Cancer Ther 2009 Mar 24;8(3):615-25. Epub 2009 Feb 24.

Robert H. Lurie Comprehensive Cancer Center, Northwestern University Medical School, 303 East Superior Street, Lurie 3-107, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1158/1535-7163.MCT-08-1196DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2681262PMC
March 2009

Dissecting an alternative splicing analysis workflow for GeneChip Exon 1.0 ST Affymetrix arrays.

BMC Genomics 2008 Nov 28;9:571. Epub 2008 Nov 28.

Department of Clinical and Biological Sciences, University of Torino, Regione Gonzole 10, Orbassano (TO), 10043, Italy.

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http://dx.doi.org/10.1186/1471-2164-9-571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2612032PMC
November 2008

oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language.

Bioinformatics 2007 Dec 17;23(24):3406-8. Epub 2007 Sep 17.

CBM (Cluster in Biomedicine) S.c.r.l., AREA Science Park, Basovizza SS 14, km 163,5 34012 Trieste, Italy.

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http://dx.doi.org/10.1093/bioinformatics/btm469DOI Listing
December 2007

Microarray data analysis and mining approaches.

Brief Funct Genomic Proteomic 2007 Dec 22;6(4):265-81. Epub 2008 Jan 22.

Department of Informatics, University of Torino, Italy.

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http://dx.doi.org/10.1093/bfgp/elm034DOI Listing
December 2007

Conjugated linoleic acid alters global gene expression in human intestinal-like Caco-2 cells in an isomer-specific manner.

J Nutr 2007 Nov;137(11):2359-65

Department of Food and Nutritional Sciences, University College, Cork, Ireland.

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http://dx.doi.org/10.1093/jn/137.11.2359DOI Listing
November 2007

Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer.

BMC Cancer 2006 Jul 26;6:200. Epub 2006 Jul 26.

Department of Clinical and Biological Sciences, University of Torino, Regione Gonzole 10, 10043 Orbassano, Torino, Italy.

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http://dx.doi.org/10.1186/1471-2407-6-200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1557528PMC
July 2006

Oxysterol-induced up-regulation of MCP-1 expression and synthesis in macrophage cells.

Free Radic Biol Med 2005 Nov 11;39(9):1152-61. Epub 2005 Aug 11.

Department of Clinical and Biological Sciences, University of Turin, S. Luigi Hospital, 10043 Orbassano (Turin), Italy.

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http://dx.doi.org/10.1016/j.freeradbiomed.2005.06.024DOI Listing
November 2005

Immune prevention of mammary carcinogenesis in HER-2/neu transgenic mice: a microarray scenario.

Cancer Immunol Immunother 2005 Jun 3;54(6):599-610. Epub 2005 Feb 3.

Cancer Research Section, Department of Experimental Pathology, University of Bologna, Bologna, 40126, Italy.

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http://dx.doi.org/10.1007/s00262-004-0635-4DOI Listing
June 2005

Towards a long-lasting immune prevention of HER2 mammary carcinomas: directions from transgenic mice.

Cell Cycle 2004 Jun 19;3(6):704-6. Epub 2004 Jun 19.

Department of Clinical and Biological Sciences, University of Turin, Orbassano, Italy.

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June 2004

Microarray data analysis and mining.

Methods Mol Med 2004 ;94:67-90

Department of Biological and Clinical Sciences, University of Torino, Italy.

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http://dx.doi.org/10.1385/1-59259-679-7:67DOI Listing
April 2004

Purification of recombinant proteins with high isoelectric points.

Methods Mol Med 2004 ;94:225-38

Department of Biological and Clinical Sciences, University of Torino, Italy.

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http://dx.doi.org/10.1385/1-59259-679-7:225DOI Listing
April 2004

The human MDM2 oncoprotein increases the transcriptional activity and the protein level of the p53 homolog p63.

J Biol Chem 2002 Jan 19;277(4):2674-81. Epub 2001 Nov 19.

Department of Genetics and General and Molecular Biology, University of Naples "Federico II," via Mezzocannone 8, 80134 Napoli, Italy.

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http://www.jbc.org/lookup/doi/10.1074/jbc.M107173200
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http://dx.doi.org/10.1074/jbc.M107173200DOI Listing
January 2002