Qunhua Li

Qunhua Li

UNVERIFIED PROFILE

Are you Qunhua Li?   Register this Author

Register author
Qunhua Li

Qunhua Li

Publications by authors named "Qunhua Li"

Are you Qunhua Li?   Register this Author

20Publications

300Reads

21Profile Views

powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire.

PLoS Comput Biol 2018 11 28;14(11):e1006571. Epub 2018 Nov 28.

Department of Statistics, Pennsylvania State University, University Park, Pennsylvania, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1006571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6287877PMC
November 2018

Maximum Rank Reproducibility: A Nonparametric Approach to Assessing Reproducibility in Replicate Experiments.

J Am Stat Assoc 2018 8;113(523):1028-1039. Epub 2018 Oct 8.

Department of Biostatistics and Informatics, Colorado School of Public Health, Anschutz Medical Campus, CO.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1080/01621459.2017.1397521DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6596287PMC
October 2018

A regression framework for assessing covariate effects on the reproducibility of high-throughput experiments.

Biometrics 2018 09 29;74(3):803-813. Epub 2017 Nov 29.

Department of Statistics, Pennsylvania State University, University Park, Pennsylvania 16802, U.S.A.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/biom.12832DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5975112PMC
September 2018

Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network.

PLoS Comput Biol 2018 09 21;14(9):e1006436. Epub 2018 Sep 21.

Department of Statistics, Pennsylvania State University, State College, Pennsylvania, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1006436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6173447PMC
September 2018

A Continuous Threshold Expectile Model.

Comput Stat Data Anal 2017 Dec 29;116:49-66. Epub 2017 Jul 29.

Department of Statistics, Pennsylvania State University, PA, 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.csda.2017.07.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5731791PMC
December 2017

HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient.

Genome Res 2017 11 30;27(11):1939-1949. Epub 2017 Aug 30.

Bioinformatics and Genomics Program, Pennsylvania State University, University Park, Pennsylvania 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1101/gr.220640.117DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668950PMC
November 2017

Robust bent line regression.

J Stat Plan Inference 2017 Jun 21;185:41-55. Epub 2017 Jan 21.

Department of Statistics, Pennsylvania State University, PA, 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jspi.2017.01.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5605190PMC
June 2017

A food-based approach that targets interleukin-6, a key regulator of chronic intestinal inflammation and colon carcinogenesis.

J Nutr Biochem 2017 05 28;43:11-17. Epub 2017 Jan 28.

Department of Food Science, The Pennsylvania State University, University Park, PA, USA; The Pennsylvania State University Milton S. Hershey College of Medicine, Hershey, PA, USA; Center for Molecular Immunology and Infectious Diseases, The Pennsylvania State University, University Park, PA, USA. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jnutbio.2017.01.012DOI Listing
May 2017

A semi-parametric statistical model for integrating gene expression profiles across different platforms.

Authors:
Yafei Lyu Qunhua Li

BMC Bioinformatics 2016 Jan 11;17 Suppl 1. Epub 2016 Jan 11.

Department of Statistics, Pennsylvania State University, University Park, PA, 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-015-0847-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4895261PMC
January 2016

Multi-scale biological and physical modelling of the tumour micro-environment.

Drug Discov Today Dis Models 2015 20;16:7-15. Epub 2015 Jul 20.

Department of Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.ddmod.2015.03.001DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6625769PMC
July 2015

Practical guidelines for the comprehensive analysis of ChIP-seq data.

PLoS Comput Biol 2013 14;9(11):e1003326. Epub 2013 Nov 14.

Institute for Molecular Bioscience, The University of Queensland, Brisbane, Australia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1003326DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3828144PMC
July 2014

Galaxy tools to study genome diversity.

Gigascience 2013 Dec 30;2(1):17. Epub 2013 Dec 30.

Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, PA 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2047-217X-2-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3877877PMC
December 2013

An overview of recent developments in genomics and associated statistical methods.

Philos Trans A Math Phys Eng Sci 2009 Nov;367(1906):4313-37

Department of Statistics University of California, Berkeley, CA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1098/rsta.2009.0164DOI Listing
November 2009

Modes of inference for evaluating the confidence of peptide identifications.

J Proteome Res 2008 Jan 8;7(1):35-9. Epub 2007 Dec 8.

Fred Hutchinson Cancer Research Center, Molecular Diagnostics Program, Seattle, Washington 98109. USA.

View Article

Download full-text PDF

Source
http://pubs.acs.org/doi/abs/10.1021/pr7007303
Publisher Site
http://dx.doi.org/10.1021/pr7007303DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5269126PMC
January 2008

Analysis of the stochastic variation in LTQ single scan mass spectra.

Rapid Commun Mass Spectrom 2006 ;20(10):1551-7

Department of Statistics, University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1002/rcm.2471DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2660854PMC
July 2007

Donuts, scratches and blanks: robust model-based segmentation of microarray images.

Bioinformatics 2005 Jun 21;21(12):2875-82. Epub 2005 Apr 21.

Department of Statistics, Box 354322 University of Washington, Seattle, WA 98195, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bti447DOI Listing
June 2005