Quan Zou

Quan Zou

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Quan Zou

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PEPred-Suite: improved and robust prediction of therapeutic peptides using adaptive feature representation learning.

Bioinformatics 2019 Nov;35(21):4272-4280

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.1093/bioinformatics/btz246DOI Listing
November 2019

Removal of phosphate from aqueous solution using MgO-modified magnetic biochar derived from anaerobic digestion residue.

J Environ Manage 2019 Nov 31;250:109438. Epub 2019 Aug 31.

School of Environment, Tsinghua University, Beijing, 100084, China.

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http://dx.doi.org/10.1016/j.jenvman.2019.109438DOI Listing
November 2019

Critical evaluation of web-based prediction tools for human protein subcellular localization.

Brief Bioinform 2019 Nov 6. Epub 2019 Nov 6.

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bib/bbz106DOI Listing
November 2019

Predicting disease-associated circular RNAs using deep forests combined with positive-unlabeled learning methods.

Brief Bioinform 2019 Oct 14. Epub 2019 Oct 14.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.1093/bib/bbz080DOI Listing
October 2019

Editorial: Machine Learning Techniques on Gene Function Prediction.

Front Genet 2019 4;10:938. Epub 2019 Oct 4.

Institute of Informatics, Silesian University of Technology, Gliwice, Poland.

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http://dx.doi.org/10.3389/fgene.2019.00938DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6788354PMC
October 2019

SecProMTB: Support Vector Machine-Based Classifier for Secretory Proteins Using Imbalanced Data Sets Applied to Mycobacterium tuberculosis.

Proteomics 2019 Sep 8;19(17):e1900007. Epub 2019 Aug 8.

College of Intelligence and Computing, Tianjin University, 300350, Tianjin, China.

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http://dx.doi.org/10.1002/pmic.201900007DOI Listing
September 2019

Corrigendum Investigation and development of maize fused network analysis with multi-omics [Plant Physiol. Biochem. 141 (2019) 380-387].

Plant Physiol Biochem 2019 Sep 27;142:536-537. Epub 2019 Aug 27.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, 610000, China. Electronic address:

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http://dx.doi.org/10.1016/j.plaphy.2019.08.017DOI Listing
September 2019

A Random Forest Sub-Golgi Protein Classifier Optimized via Dipeptide and Amino Acid Composition Features.

Front Bioeng Biotechnol 2019 4;7:215. Epub 2019 Sep 4.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.3389/fbioe.2019.00215DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6737778PMC
September 2019

AOPs-SVM: A Sequence-Based Classifier of Antioxidant Proteins Using a Support Vector Machine.

Front Bioeng Biotechnol 2019 18;7:224. Epub 2019 Sep 18.

College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.3389/fbioe.2019.00224DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6759716PMC
September 2019

Meta-Path Methods for Prioritizing Candidate Disease miRNAs.

IEEE/ACM Trans Comput Biol Bioinform 2019 Jan-Feb;16(1):283-291. Epub 2017 Nov 22.

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http://dx.doi.org/10.1109/TCBB.2017.2776280DOI Listing
August 2019

Deep-Resp-Forest: A deep forest model to predict anti-cancer drug response.

Methods 2019 Aug 14;166:91-102. Epub 2019 Feb 14.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China. Electronic address:

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http://dx.doi.org/10.1016/j.ymeth.2019.02.009DOI Listing
August 2019

Investigation and development of maize fused network analysis with multi-omics.

Plant Physiol Biochem 2019 Aug 15;141:380-387. Epub 2019 Jun 15.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, 610000, China. Electronic address:

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http://dx.doi.org/10.1016/j.plaphy.2019.06.016DOI Listing
August 2019

Selecting Essential MicroRNAs Using a Novel Voting Method.

Mol Ther Nucleic Acids 2019 Aug 5;18:16-23. Epub 2019 Aug 5.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China; Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China. Electronic address:

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http://dx.doi.org/10.1016/j.omtn.2019.07.019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6727015PMC
August 2019

RicyerDB: A Database For Collecting Rice Yield-related Genes with Biological Analysis.

Int J Biol Sci 2018 22;14(8):965-970. Epub 2018 May 22.

School of Computer Science and Technology, Tianjin University, Tianjin, 300354, China.

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http://dx.doi.org/10.7150/ijbs.23328DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6036756PMC
July 2019

Incorporating Distance-Based Top-n-gram and Random Forest To Identify Electron Transport Proteins.

J Proteome Res 2019 Jul 3;18(7):2931-2939. Epub 2019 Jun 3.

Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China , Chengdu , China.

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http://dx.doi.org/10.1021/acs.jproteome.9b00250DOI Listing
July 2019

Protein Function Prediction: From Traditional Classifier to Deep Learning.

Proteomics 2019 Jul 11;19(14):e1900119. Epub 2019 Jul 11.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, P. R. China.

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http://dx.doi.org/10.1002/pmic.201900119DOI Listing
July 2019

Clustering and classification methods for single-cell RNA-sequencing data.

Brief Bioinform 2019 Jul 4. Epub 2019 Jul 4.

Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.1093/bib/bbz062DOI Listing
July 2019

A novel collaborative filtering model for LncRNA-disease association prediction based on the Naïve Bayesian classifier.

BMC Bioinformatics 2019 Jul 17;20(1):396. Epub 2019 Jul 17.

College of Computer Engineering & Applied Mathematics, Changsha University, Changsha, Hunan, People's Republic of China.

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http://dx.doi.org/10.1186/s12859-019-2985-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6637631PMC
July 2019

Geochemical simulation of the stabilization process of vanadium-contaminated soil remediated with calcium oxide and ferrous sulfate.

Ecotoxicol Environ Saf 2019 Jun 8;174:498-505. Epub 2019 Mar 8.

School of Environment, Tsinghua University, Beijing 100084, China.

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http://dx.doi.org/10.1016/j.ecoenv.2019.02.082DOI Listing
June 2019

Prediction of Potential Disease-Associated MicroRNAs by Using Neural Networks.

Mol Ther Nucleic Acids 2019 Jun 18;16:566-575. Epub 2019 Apr 18.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610000, China; Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610000, China. Electronic address:

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http://dx.doi.org/10.1016/j.omtn.2019.04.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6510966PMC
June 2019

Investigating maize yield-related genes in multiple omics interaction network data.

IEEE Trans Nanobioscience 2019 Jun 3. Epub 2019 Jun 3.

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http://dx.doi.org/10.1109/TNB.2019.2920419DOI Listing
June 2019

Ultrasound versus temporal artery biopsy in patients with Giant cell arteritis: a prospective cohort study.

BMC Med Imaging 2019 06 6;19(1):47. Epub 2019 Jun 6.

Department of Cardiology, the first hospital of Lanzhou University, Lanzhou, 730000, China.

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http://dx.doi.org/10.1186/s12880-019-0344-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6554885PMC
June 2019

Prediction of tumor metastasis from sequencing data in the era of genome sequencing.

Brief Funct Genomics 2019 Jun 14. Epub 2019 Jun 14.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.1093/bfgp/elz010DOI Listing
June 2019

Molecular Computing and Bioinformatics.

Molecules 2019 Jun 26;24(13). Epub 2019 Jun 26.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu 610054, China.

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http://dx.doi.org/10.3390/molecules24132358DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6651761PMC
June 2019

The detoxification effect of liquid digestate on vanadium toxicity to seed germination and seedling growth of dog's tail grass.

J Hazard Mater 2019 May 28;369:456-464. Epub 2019 Jan 28.

School of Environment, Tsinghua University, Beijing 100084, China.

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http://dx.doi.org/10.1016/j.jhazmat.2019.01.091DOI Listing
May 2019

The effect of vanadium on essential element uptake of Setaria viridis' seedlings.

J Environ Manage 2019 May 25;237:399-407. Epub 2019 Feb 25.

College of Grassland and Environmental Science, Xinjiang Agricultural University, Urumqi, Xinjiang, 830052, China; School of Environment, Tsinghua University, Beijing, 100084, China.

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http://dx.doi.org/10.1016/j.jenvman.2019.02.054DOI Listing
May 2019

Multi-step column leaching using low-molecular-weight organic acids for remediating vanadium- and chromium-contaminated soil.

Environ Sci Pollut Res Int 2019 May 2;26(15):15406-15413. Epub 2019 Apr 2.

School of Environment, Tsinghua University, Beijing, 10084, China.

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http://dx.doi.org/10.1007/s11356-019-04915-7DOI Listing
May 2019

Transcription factors-DNA interactions in rice: identification and verification.

Brief Bioinform 2019 May 15. Epub 2019 May 15.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.1093/bib/bbz045DOI Listing
May 2019

Iterative feature representations improve N4-methylcytosine site prediction.

Bioinformatics 2019 May 17. Epub 2019 May 17.

Institute of Computing Science & Technology, Guangzhou University, Guangzhou, China.

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https://academic.oup.com/bioinformatics/advance-article/doi/
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http://dx.doi.org/10.1093/bioinformatics/btz408DOI Listing
May 2019

Exploring sequence-based features for the improved prediction of DNA N4-methylcytosine sites in multiple species.

Bioinformatics 2019 Apr;35(8):1326-1333

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bioinformatics/bty824DOI Listing
April 2019

Abrogation of cathepsin C by Helicobacter pylori impairs neutrophil activation to promote gastric infection.

FASEB J 2019 Apr 31;33(4):5018-5033. Epub 2018 Dec 31.

Department of Microbiology and Biochemical Pharmacy, National Engineering Research Centre of Immunological Products, College of Pharmacy, Third Military Medical University, Chongqing, China.

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http://dx.doi.org/10.1096/fj.201802016RRDOI Listing
April 2019

Details in the evaluation of circular RNA detection tools: Reply to Chen and Chuang.

PLoS Comput Biol 2019 04 25;15(4):e1006916. Epub 2019 Apr 25.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.plos.org/10.1371/journal.pcbi.1006916
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http://dx.doi.org/10.1371/journal.pcbi.1006916DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6527241PMC
April 2019

Combining Sparse Group Lasso and Linear Mixed Model Improves Power to Detect Genetic Variants Underlying Quantitative Traits.

Front Genet 2019 10;10:271. Epub 2019 Apr 10.

Department of Computational Biology, Cornell University, Ithaca, NY, United States.

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http://dx.doi.org/10.3389/fgene.2019.00271DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6469383PMC
April 2019

Protein Complexes Identification with Family-Wise Error Rate Control.

IEEE/ACM Trans Comput Biol Bioinform 2019 Apr 25. Epub 2019 Apr 25.

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http://dx.doi.org/10.1109/TCBB.2019.2912602DOI Listing
April 2019

Application of Machine Learning in Microbiology.

Front Microbiol 2019 18;10:827. Epub 2019 Apr 18.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.3389/fmicb.2019.00827DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6482238PMC
April 2019

ELM-MHC: An Improved MHC Identification Method with Extreme Learning Machine Algorithm.

J Proteome Res 2019 Mar 18;18(3):1392-1401. Epub 2019 Feb 18.

Institute of Fundamental and Frontier Sciences , University of Electronic Science and Technology of China , Chengdu 610054 , China.

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http://dx.doi.org/10.1021/acs.jproteome.9b00012DOI Listing
March 2019

Supervised Brain Tumor Segmentation Based on Gradient and Context-Sensitive Features.

Front Neurosci 2019 14;13:144. Epub 2019 Mar 14.

School of Computer Software, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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https://www.frontiersin.org/article/10.3389/fnins.2019.00144
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http://dx.doi.org/10.3389/fnins.2019.00144DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427904PMC
March 2019

Diagnosis of Brain Diseases via Multi-Scale Time-Series Model.

Front Neurosci 2019 14;13:197. Epub 2019 Mar 14.

School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.3389/fnins.2019.00197DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6427090PMC
March 2019

4mCPred: machine learning methods for DNA N4-methylcytosine sites prediction.

Bioinformatics 2019 02;35(4):593-601

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bioinformatics/bty668DOI Listing
February 2019

Deep learning in omics: a survey and guideline.

Brief Funct Genomics 2019 02;18(1):41-57

School of Computer Science, National University of Defense Technology, Changsha, China.

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https://academic.oup.com/bfg/advance-article/doi/10.1093/bfg
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http://dx.doi.org/10.1093/bfgp/ely030DOI Listing
February 2019

Gene2vec: gene subsequence embedding for prediction of mammalian -methyladenosine sites from mRNA.

RNA 2019 02 13;25(2):205-218. Epub 2018 Nov 13.

School of Computer Science and Technology, Harbin Institute of Technology, 150001 Shenzhen, China.

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http://dx.doi.org/10.1261/rna.069112.118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348985PMC
February 2019

Vanadium and chromium-contaminated soil remediation using VFAs derived from food waste as soil washing agents: A case study.

J Environ Manage 2019 Feb 7;232:895-901. Epub 2018 Dec 7.

School of Environment, Tsinghua University, Beijing 10084, China.

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http://dx.doi.org/10.1016/j.jenvman.2018.11.129DOI Listing
February 2019

Computational methods for identifying the critical nodes in biological networks.

Brief Bioinform 2019 Feb 12. Epub 2019 Feb 12.

Department of Computer Science, Xiamen University, China.

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https://academic.oup.com/bib/advance-article/doi/10.1093/bib
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http://dx.doi.org/10.1093/bib/bbz011DOI Listing
February 2019

Perspectives of Bioinformatics in Big Data Era.

Authors:
Maozu Guo Quan Zou

Curr Genomics 2019 Feb;20(2):79-80

1School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, P.R. China; 2Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, P.R. China; 3Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu, P.R. China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6728898PMC
February 2019

Empirical comparison and analysis of web-based cell-penetrating peptide prediction tools.

Brief Bioinform 2019 Jan 10. Epub 2019 Jan 10.

College of Intelligence and Computing, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bib/bby124DOI Listing
January 2019

A Novel Approach Based on a Weighted Interactive Network to Predict Associations of MiRNAs and Diseases.

Int J Mol Sci 2018 Dec 28;20(1). Epub 2018 Dec 28.

College of Computer Engineering & Applied Mathematics, Changsha University, Changsha 410001, China.

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http://dx.doi.org/10.3390/ijms20010110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6337518PMC
December 2018

One-Step Synthesis of Iodinated Polypyrrole Nanoparticles for CT Imaging Guided Photothermal Therapy of Tumors.

Small 2018 11 9;14(45):e1803101. Epub 2018 Oct 9.

School of Medical Imaging, Tianjin Medical University, Tianjin, 300203, China.

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http://doi.wiley.com/10.1002/smll.201803101
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http://dx.doi.org/10.1002/smll.201803101DOI Listing
November 2018

HITS-PR-HHblits: protein remote homology detection by combining PageRank and Hyperlink-Induced Topic Search.

Brief Bioinform 2018 Nov 7. Epub 2018 Nov 7.

Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China.

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http://dx.doi.org/10.1093/bib/bby104DOI Listing
November 2018

Predicting Diabetes Mellitus With Machine Learning Techniques.

Front Genet 2018 6;9:515. Epub 2018 Nov 6.

Department of Pathophysiology, School of Basic Medicine, Southwest Medical University, Luzhou, China.

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http://dx.doi.org/10.3389/fgene.2018.00515DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6232260PMC
November 2018

Scalable Data Mining Algorithms in Computational Biology and Biomedicine.

Biomed Res Int 2017;2017:5652041. Epub 2017 Feb 28.

Center for Bioinformatics and Systems Biology, Wake Forest School of Medicine, Winston-Salem, NC 27157, USA.

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https://www.hindawi.com/journals/bmri/2017/5652041/
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http://dx.doi.org/10.1155/2017/5652041DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5350399PMC
October 2018

Comparative analysis and prediction of quorum-sensing peptides using feature representation learning and machine learning algorithms.

Brief Bioinform 2018 Oct 31. Epub 2018 Oct 31.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://fdslive.oup.com/www.oup.com/pdf/production_in_progres
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http://dx.doi.org/10.1093/bib/bby107DOI Listing
October 2018

The interactions of metal concentrations and soil properties on toxic metal accumulation of native plants in vanadium mining area.

J Environ Manage 2018 Sep 29;222:216-226. Epub 2018 May 29.

School of Environment, Tsinghua University, Beijing, 100084, China.

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http://dx.doi.org/10.1016/j.jenvman.2018.05.081DOI Listing
September 2018

Sequence clustering in bioinformatics: an empirical study.

Brief Bioinform 2018 Sep 18. Epub 2018 Sep 18.

Xiamen University.

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http://dx.doi.org/10.1093/bib/bby090DOI Listing
September 2018

Sc-ncDNAPred: A Sequence-Based Predictor for Identifying Non-coding DNA in .

Front Microbiol 2018 12;9:2174. Epub 2018 Sep 12.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.3389/fmicb.2018.02174DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6144933PMC
September 2018

NucPosPred: Predicting species-specific genomic nucleosome positioning via four different modes of general PseKNC.

J Theor Biol 2018 08 18;450:15-21. Epub 2018 Apr 18.

School of Computer Science and Technology, Tianjin University, Tianjin, China. Electronic address:

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http://dx.doi.org/10.1016/j.jtbi.2018.04.025DOI Listing
August 2018

Bioinformatics applications on Apache Spark.

Gigascience 2018 08 1;7(8). Epub 2018 Aug 1.

College of Computer, National University of Defense Technology, No.109, Deya Road, Kaifu District, Changsha, 410073, China.

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http://dx.doi.org/10.1093/gigascience/giy098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6113509PMC
August 2018

Prediction of potential disease-associated microRNAs using structural perturbation method.

Bioinformatics 2018 07;34(14):2425-2432

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bioinformatics/bty112DOI Listing
July 2018

VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism.

J Genet Genomics 2018 07 17;45(7):407-410. Epub 2018 Jul 17.

School of Computer Science, National University of Defense Technology, Changsha 410073, China; National Supercomputer Centre in Changsha & College of Computer Science and Electronic Engineering, Hunan University, Changsha 410082, China. Electronic address:

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http://dx.doi.org/10.1016/j.jgg.2018.07.004DOI Listing
July 2018

Research progress in protein posttranslational modification site prediction.

Brief Funct Genomics 2018 07;18(4):220-229

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1093/bfgp/ely039DOI Listing
July 2018

Network-based method for mining novel HPV infection related genes using random walk with restart algorithm.

Biochim Biophys Acta Mol Basis Dis 2018 Jun 29;1864(6 Pt B):2376-2383. Epub 2017 Nov 29.

School of Computer Science and Technology, TianJin University, Tianjin 300350, China. Electronic address:

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http://dx.doi.org/10.1016/j.bbadis.2017.11.021DOI Listing
June 2018

Biological denitrification from mature landfill leachate using a food-waste-derived carbon source.

J Environ Manage 2018 May 8;214:184-191. Epub 2018 Mar 8.

School of Environment, Tsinghua University, Beijing 100084, China.

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http://dx.doi.org/10.1016/j.jenvman.2018.03.003DOI Listing
May 2018

cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining.

BMC Bioinformatics 2018 05 8;19(Suppl 4):98. Epub 2018 May 8.

College of Computer Science and Electronic Engineering & National Supercomputer Centre in Changsha, Hunan University, Changsha, 410082, China.

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http://dx.doi.org/10.1186/s12859-018-2071-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998871PMC
May 2018

70ProPred: a predictor for discovering sigma70 promoters based on combining multiple features.

BMC Syst Biol 2018 04 24;12(Suppl 4):44. Epub 2018 Apr 24.

School of Computer Science and Technology, Tianjin University, Tianjin, 300072, China.

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http://dx.doi.org/10.1186/s12918-018-0570-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5998878PMC
April 2018

Tumor origin detection with tissue-specific miRNA and DNA methylation markers.

Bioinformatics 2018 02;34(3):398-406

School of Computer Science and Technology.

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http://dx.doi.org/10.1093/bioinformatics/btx622DOI Listing
February 2018

Special Protein Molecules Computational Identification.

Authors:
Quan Zou Wenying He

Int J Mol Sci 2018 Feb 10;19(2). Epub 2018 Feb 10.

School of Computer Science and Technology, Tianjin University, Tianjin 300354, China.

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http://dx.doi.org/10.3390/ijms19020536DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5855758PMC
February 2018

Future Health and Economic Impact of Comprehensive Tobacco Control in DoD: A Microsimulation Approach.

Mil Med 2018 01;183(1-2):e104-e112

Department of Defense, U.S. Public Health Service, OUSD(P&R)/Force Resiliency; Pentagon, Room 2E593, Washington, DC 20301-3010.

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http://dx.doi.org/10.1093/milmed/usx015DOI Listing
January 2018

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.

J Comput Biol 2017 Dec 8;24(12):1230-1242. Epub 2017 Nov 8.

1 School of Computer Science and Technology, National University of Defense Technology , Changsha, China .

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http://dx.doi.org/10.1089/cmb.2017.0040DOI Listing
December 2017

Reconstructing evolutionary trees in parallel for massive sequences.

BMC Syst Biol 2017 12 14;11(Suppl 6):100. Epub 2017 Dec 14.

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

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http://dx.doi.org/10.1186/s12918-017-0476-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751538PMC
December 2017

Probability-based collaborative filtering model for predicting gene-disease associations.

BMC Med Genomics 2017 12 28;10(Suppl 5):76. Epub 2017 Dec 28.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1186/s12920-017-0313-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5751590PMC
December 2017

Prediction and Identification of Krüppel-Like Transcription Factors by Machine Learning Method.

Comb Chem High Throughput Screen 2017 ;20(7):594-602

School of Computer and Technology, Tianjin University, Tianjin. China.

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http://dx.doi.org/10.2174/1386207320666170314094951DOI Listing
November 2017

Machine learning and graph analytics in computational biomedicine.

Artif Intell Med 2017 11 7;83. Epub 2017 Sep 7.

Wake Forest University, USA.

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http://dx.doi.org/10.1016/j.artmed.2017.09.003DOI Listing
November 2017

Oral microbial community assembly under the influence of periodontitis.

PLoS One 2017 16;12(8):e0182259. Epub 2017 Aug 16.

Computational Biology and Medical Ecology Lab, State Key Lab of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0182259PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5558961PMC
October 2017

SkipCPP-Pred: an improved and promising sequence-based predictor for predicting cell-penetrating peptides.

BMC Genomics 2017 10 16;18(Suppl 7):742. Epub 2017 Oct 16.

School of Computer Science and Technology, Tianjin University, Tianjin, 30050, China.

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https://bmcgenomics.biomedcentral.com/articles/10.1186/s1286
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http://dx.doi.org/10.1186/s12864-017-4128-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5657092PMC
October 2017

HPSLPred: An Ensemble Multi-Label Classifier for Human Protein Subcellular Location Prediction with Imbalanced Source.

Proteomics 2017 Sep;17(17-18)

School of Computer Science and Technology, Tianjin University, Tianjin, P. R. China.

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http://dx.doi.org/10.1002/pmic.201700262DOI Listing
September 2017

Computational identification and characterization of miRNAs and their target genes from five cyprinidae fishes.

Saudi J Biol Sci 2017 Sep 13;24(6):1126-1135. Epub 2015 May 13.

College of Animal Science and Technology, Henan University of Science and Technology, Luoyang, China.

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http://dx.doi.org/10.1016/j.sjbs.2015.05.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5562384PMC
September 2017

HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.

Algorithms Mol Biol 2017 29;12:25. Epub 2017 Sep 29.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1186/s13015-017-0116-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5622559PMC
September 2017

DephosSitePred: A High Accuracy Predictor for Protein Dephosphorylation Sites.

Comb Chem High Throughput Screen 2017 ;20(2):153-157

School of Computer Science and Technology, Tianjin University, Tianjin Shi, China.

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http://dx.doi.org/10.2174/1386207319666161228155636DOI Listing
August 2017

Editorial: Latest Computational Techniques for Big Data Era Bioinformatics Problems.

Authors:
Quan Zou

Curr Genomics 2017 Aug;18(4):305

Guest Editor: School of Computer Science and Technology Tianjin University Tianjin 300354 P.R. China.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5635613PMC
http://dx.doi.org/10.2174/138920291804170726143423DOI Listing
August 2017

PhosPred-RF: A Novel Sequence-Based Predictor for Phosphorylation Sites Using Sequential Information Only.

IEEE Trans Nanobioscience 2017 06 31;16(4):240-247. Epub 2017 Jan 31.

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http://dx.doi.org/10.1109/TNB.2017.2661756DOI Listing
June 2017

A comprehensive overview and evaluation of circular RNA detection tools.

PLoS Comput Biol 2017 Jun 8;13(6):e1005420. Epub 2017 Jun 8.

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.1371/journal.pcbi.1005420DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5466358PMC
June 2017

CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment.

BMC Bioinformatics 2017 Jun 24;18(1):315. Epub 2017 Jun 24.

School of Computer Science and Technology, Tianjin University, Yaguan Road, Tianjin, China.

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http://dx.doi.org/10.1186/s12859-017-1725-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5483318PMC
June 2017

CPPred-RF: A Sequence-based Predictor for Identifying Cell-Penetrating Peptides and Their Uptake Efficiency.

J Proteome Res 2017 05 26;16(5):2044-2053. Epub 2017 Apr 26.

School of Computer Science and Technology, Tianjin University , Tianjin 300072, China.

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http://dx.doi.org/10.1021/acs.jproteome.7b00019DOI Listing
May 2017

BP Neural Network Could Help Improve Pre-miRNA Identification in Various Species.

Biomed Res Int 2016 22;2016:9565689. Epub 2016 Aug 22.

School of Computer Science and Technology, Tianjin University, Tianjin 300350, China; State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300074, China.

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http://dx.doi.org/10.1155/2016/9565689DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5011242PMC
February 2017

Fast Prediction of Protein Methylation Sites Using a Sequence-Based Feature Selection Technique.

IEEE/ACM Trans Comput Biol Bioinform 2019 Jul-Aug;16(4):1264-1273. Epub 2017 Feb 16.

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http://dx.doi.org/10.1109/TCBB.2017.2670558DOI Listing
February 2017

Detecting N-methyladenosine sites from RNA transcriptomes using ensemble Support Vector Machines.

Sci Rep 2017 01 12;7:40242. Epub 2017 Jan 12.

School of Computer Science and Technology, Tianjin University, Tianjin 300354, China.

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http://dx.doi.org/10.1038/srep40242DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5227715PMC
January 2017

Which statistical significance test best detects oncomiRNAs in cancer tissues? An exploratory analysis.

Oncotarget 2016 Dec;7(51):85613-85623

School of Computer Science and Technology, Tianjin University, Tianjin, China.

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http://dx.doi.org/10.18632/oncotarget.12828DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5356763PMC
December 2016

Recent Progress in Machine Learning-Based Methods for Protein Fold Recognition.

Authors:
Leyi Wei Quan Zou

Int J Mol Sci 2016 Dec 16;17(12). Epub 2016 Dec 16.

School of Computer Science and Technology, Tianjin University, Tianjin 300354, China.

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http://dx.doi.org/10.3390/ijms17122118DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5187918PMC
December 2016

Identification of DEP domain-containing proteins by a machine learning method and experimental analysis of their expression in human HCC tissues.

Sci Rep 2016 12 21;6:39655. Epub 2016 Dec 21.

School of Computer Science and Technology, Tianjin University, Tianjin 300354, China.

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http://dx.doi.org/10.1038/srep39655DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5175133PMC
December 2016

Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy.

BMC Syst Biol 2016 Dec 23;10(Suppl 4):114. Epub 2016 Dec 23.

School of Information Science and Engineering, Xiamen University, Xiamen, China.

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http://dx.doi.org/10.1186/s12918-016-0353-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5259984PMC
December 2016

The Generalized Relative Pairs IBD Distribution: Its Use in the Detection of Linkage.

Authors:
Quan Zou

Front Public Health 2016 23;4:259. Epub 2016 Nov 23.

Department of Statistics, The George Washington University , Washington, DC , USA.

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http://dx.doi.org/10.3389/fpubh.2016.00259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5120125PMC
November 2016

Biomineralization of Versatile CuS/Gd2 O3 Hybrid Nanoparticles for MR Imaging and Antitumor Photothermal Chemotherapy.

Chem Asian J 2016 Sep 12;11(17):2458-69. Epub 2016 Aug 12.

School of Medical Imaging, Tianjin Medical University, Tianjin, 300203, P. R. China.

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http://dx.doi.org/10.1002/asia.201600920DOI Listing
September 2016

Theranostic metal-organic framework core-shell composites for magnetic resonance imaging and drug delivery.

Chem Sci 2016 Aug 26;7(8):5294-5301. Epub 2016 Apr 26.

School of Medical Imaging , Tianjin Medical University , Tianjin 300203 , China . Email:

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http://dx.doi.org/10.1039/c6sc01359gDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6020541PMC
August 2016

Accurate Identification of Cancerlectins through Hybrid Machine Learning Technology.

Int J Genomics 2016 13;2016:7604641. Epub 2016 Jul 13.

School of Computer Science and Technology, Tianjin University, Tianjin, China; State Key Laboratory of Medicinal Chemical Biology, NanKai University, Tianjin, China.

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http://dx.doi.org/10.1155/2016/7604641DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4961832PMC
August 2016

Prediction of G Protein-Coupled Receptors with SVM-Prot Features and Random Forest.

Scientifica (Cairo) 2016 27;2016:8309253. Epub 2016 Jul 27.

School of Computer Science and Technology, Tianjin University, Tianjin 300350, China; State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China.

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http://dx.doi.org/10.1155/2016/8309253DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4978840PMC
August 2016

Improving tRNAscan-SE Annotation Results via Ensemble Classifiers.

Mol Inform 2015 11 14;34(11-12):761-70. Epub 2015 Sep 14.

Software School, Xiamen University, Xiamen 361005, China.

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http://dx.doi.org/10.1002/minf.201500031DOI Listing
November 2015