Qihui Zhu

Qihui Zhu

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Qihui Zhu

Qihui Zhu

Publications by authors named "Qihui Zhu"

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33Publications

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TeXP: Deconvolving the effects of pervasive and autonomous transcription of transposable elements.

PLoS Comput Biol 2019 Aug 19;15(8):e1007293. Epub 2019 Aug 19.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1007293DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6715295PMC
August 2019

Reversible rearrangement of magnetic nanoparticles in solution studied using time-resolved SAXS method.

J Synchrotron Radiat 2019 Jul 11;26(Pt 4):1294-1301. Epub 2019 Jun 11.

Complex Systems Division, Beijing Computational Science Research Center, 8 E Xibeiwang Rd, Haidian, Beijing 100193, People's Republic of China.

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http://dx.doi.org/10.1107/S1600577519004909DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6613115PMC
July 2019

Deciphering the Origin and Evolution of the XXY System in Two Closely-Related Species (Oplegnathidae and Centrarchiformes).

Int J Mol Sci 2019 Jul 22;20(14). Epub 2019 Jul 22.

Departamento de Genética e Evolução, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luiz Km. 235, C.P. 676, São Carlos SP 13565-905, Brazil.

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http://dx.doi.org/10.3390/ijms20143571DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6678977PMC
July 2019

Multi-platform discovery of haplotype-resolved structural variation in human genomes.

Nat Commun 2019 04 16;10(1):1784. Epub 2019 Apr 16.

The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.

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http://www.nature.com/articles/s41467-018-08148-z
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http://dx.doi.org/10.1038/s41467-018-08148-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6467913PMC
April 2019

Liriodendron genome sheds light on angiosperm phylogeny and species-pair differentiation.

Nat Plants 2019 01 17;5(1):18-25. Epub 2018 Dec 17.

Key Laboratory of Forest Genetics and Biotechnology, Ministry of Education of China, Co-Innovation Center for the Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.

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http://www.nature.com/articles/s41477-018-0323-6
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http://dx.doi.org/10.1038/s41477-018-0323-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6784881PMC
January 2019

Array-Based Comparative Genomic Hybridization (aCGH).

Methods Mol Biol 2017 ;1541:167-179

The Jackson Laboratory for Genomic Medicine, 10 Discovery Drive, Farmington, CT, 06032, USA.

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http://dx.doi.org/10.1007/978-1-4939-6703-2_15DOI Listing
January 2018

Origin of the Reflectin Gene and Hierarchical Assembly of Its Protein.

Curr Biol 2017 Sep 7;27(18):2833-2842.e6. Epub 2017 Sep 7.

State Key Laboratory of Membrane Biology, Laboratory of Molecular Biophysics, School of Life Sciences, Peking University, Beijing 100871, China; Beijing Computational Science Research Center, The Chinese Academy of Engineering Physics, Beijing 100084, China. Electronic address:

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http://dx.doi.org/10.1016/j.cub.2017.07.061DOI Listing
September 2017

Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas.

Mar Biotechnol (NY) 2016 Apr 8;18(2):176-88. Epub 2016 Jan 8.

Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China.

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http://dx.doi.org/10.1007/s10126-015-9678-0DOI Listing
April 2016

Characterization of an inhibitor of apoptosis protein in Crassostrea gigas clarifies its role in apoptosis and immune defense.

Dev Comp Immunol 2015 Jul 23;51(1):74-8. Epub 2015 Feb 23.

National & Local Joint Engineering Laboratory of Ecological Mariculture, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China. Electronic address:

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http://dx.doi.org/10.1016/j.dci.2015.02.011DOI Listing
July 2015

Isolation and diversity analysis of resistance gene homologues from switchgrass.

G3 (Bethesda) 2013 Jun 21;3(6):1031-42. Epub 2013 Jun 21.

Department of Genetics, The University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1534/g3.112.005447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3689800PMC
June 2013

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.

Authors:
Jo Ann Banks Tomoaki Nishiyama Mitsuyasu Hasebe John L Bowman Michael Gribskov Claude dePamphilis Victor A Albert Naoki Aono Tsuyoshi Aoyama Barbara A Ambrose Neil W Ashton Michael J Axtell Elizabeth Barker Michael S Barker Jeffrey L Bennetzen Nicholas D Bonawitz Clint Chapple Chaoyang Cheng Luiz Gustavo Guedes Correa Michael Dacre Jeremy DeBarry Ingo Dreyer Marek Elias Eric M Engstrom Mark Estelle Liang Feng Cédric Finet Sandra K Floyd Wolf B Frommer Tomomichi Fujita Lydia Gramzow Michael Gutensohn Jesper Harholt Mitsuru Hattori Alexander Heyl Tadayoshi Hirai Yuji Hiwatashi Masaki Ishikawa Mineko Iwata Kenneth G Karol Barbara Koehler Uener Kolukisaoglu Minoru Kubo Tetsuya Kurata Sylvie Lalonde Kejie Li Ying Li Amy Litt Eric Lyons Gerard Manning Takeshi Maruyama Todd P Michael Koji Mikami Saori Miyazaki Shin-ichi Morinaga Takashi Murata Bernd Mueller-Roeber David R Nelson Mari Obara Yasuko Oguri Richard G Olmstead Naoko Onodera Bent Larsen Petersen Birgit Pils Michael Prigge Stefan A Rensing Diego Mauricio Riaño-Pachón Alison W Roberts Yoshikatsu Sato Henrik Vibe Scheller Burkhard Schulz Christian Schulz Eugene V Shakirov Nakako Shibagaki Naoki Shinohara Dorothy E Shippen Iben Sørensen Ryo Sotooka Nagisa Sugimoto Mamoru Sugita Naomi Sumikawa Milos Tanurdzic Günter Theissen Peter Ulvskov Sachiko Wakazuki Jing-Ke Weng William W G T Willats Daniel Wipf Paul G Wolf Lixing Yang Andreas D Zimmer Qihui Zhu Therese Mitros Uffe Hellsten Dominique Loqué Robert Otillar Asaf Salamov Jeremy Schmutz Harris Shapiro Erika Lindquist Susan Lucas Daniel Rokhsar Igor V Grigoriev

Science 2011 May 5;332(6032):960-3. Epub 2011 May 5.

Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA.

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http://sites.psu.edu/axtell/wp-content/uploads/sites/21458/2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1203810
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http://dx.doi.org/10.1126/science.1203810DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3166216PMC
May 2011

Selection on grain shattering genes and rates of rice domestication.

New Phytol 2009 Nov 5;184(3):708-20. Epub 2009 Aug 5.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.

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http://dx.doi.org/10.1111/j.1469-8137.2009.02984.xDOI Listing
November 2009

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
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http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

Novel ACTG1 mutation causing autosomal dominant non-syndromic hearing impairment in a Chinese family.

J Genet Genomics 2008 Sep;35(9):553-8

Key Laboratory of Molecular Biophysics of Ministry of Education, Center for Human Genome Research, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, China.

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http://dx.doi.org/10.1016/S1673-8527(08)60075-2DOI Listing
September 2008

Multilocus analysis of nucleotide variation of Oryza sativa and its wild relatives: severe bottleneck during domestication of rice.

Mol Biol Evol 2007 Mar 11;24(3):875-88. Epub 2007 Jan 11.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, China.

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http://dx.doi.org/10.1093/molbev/msm005DOI Listing
March 2007

Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice.

BMC Bioinformatics 2006 Oct 12;7:447. Epub 2006 Oct 12.

College of Life Sciences, National Laboratory of Plant Genetic Engineering and Protein Engineering, Center of Bioinformatics, Peking University, Beijing 100871, China.

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http://bmcbioinformatics.biomedcentral.com/articles/10.1186/
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http://dx.doi.org/10.1186/1471-2105-7-447DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1626491PMC
October 2006

A novel mutation in GDF5 causes autosomal dominant symphalangism in two Chinese families.

Am J Med Genet A 2006 Sep;140A(17):1846-53

Human Genome Research Center and College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, Hubei, P. R. China.

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http://dx.doi.org/10.1002/ajmg.a.31372DOI Listing
September 2006

Nucleotide substitution pattern in rice paralogues: implication for negative correlation between the synonymous substitution rate and codon usage bias.

Gene 2006 Jul 18;376(2):199-206. Epub 2006 Mar 18.

College of Life Sciences, National Laboratory of Plant Genetic Engineering and Protein Engineering, Center of Bioinformatics, Peking University, Beijing 100871, China.

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http://linkinghub.elsevier.com/retrieve/pii/S037811190600212
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http://dx.doi.org/10.1016/j.gene.2006.03.003DOI Listing
July 2006

DRTF: a database of rice transcription factors.

Bioinformatics 2006 May 21;22(10):1286-7. Epub 2006 Mar 21.

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University Beijing 100871, People's Republic of China.

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http://dx.doi.org/10.1093/bioinformatics/btl107DOI Listing
May 2006

Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes.

Authors:
Qihui Zhu Song Ge

New Phytol 2005 Jul;167(1):249-65

Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.

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http://dx.doi.org/10.1111/j.1469-8137.2005.01406.xDOI Listing
July 2005