Preethi H Gunaratne

Preethi H Gunaratne

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Preethi H Gunaratne

Preethi H Gunaratne

Publications by authors named "Preethi H Gunaratne"

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Transcriptomic and microRNA analyses of gene networks regulated by eicosapentaenoic acid in brown adipose tissue of diet-induced obese mice.

Biochim Biophys Acta Mol Cell Biol Lipids 2018 12 25;1863(12):1523-1531. Epub 2018 Sep 25.

Department of Nutritional Sciences, Texas Tech University, Lubbock, TX, United States; Obesity Research Cluster, Texas Tech University, Lubbock, TX, United States. Electronic address:

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http://dx.doi.org/10.1016/j.bbalip.2018.09.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6298436PMC
December 2018

Quaternary Ammonium-Terminated Films Formed from Mixed Bidentate Adsorbates Provide a High-Capacity Platform for Oligonucleotide Delivery.

ACS Appl Mater Interfaces 2018 Nov 13;10(47):40890-40900. Epub 2018 Nov 13.

Departments of Chemistry and Chemical Engineering and the Texas Center for Superconductivity , University of Houston , Houston , Texas 77204-5003 , United States.

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http://dx.doi.org/10.1021/acsami.8b12244DOI Listing
November 2018

CD56 Expression Marks Human Group 2 Innate Lymphoid Cell Divergence from a Shared NK Cell and Group 3 Innate Lymphoid Cell Developmental Pathway.

Immunity 2018 09 4;49(3):464-476.e4. Epub 2018 Sep 4.

Department of Pathology, The James Cancer Hospital and Solove Research Institute, The Ohio State University, Columbus, OH 43210 USA; Comprehensive Cancer Center, The James Cancer Hospital and Solove Research Institute, The Ohio State University, Columbus, OH 43210 USA. Electronic address:

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https://linkinghub.elsevier.com/retrieve/pii/S10747613183035
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http://dx.doi.org/10.1016/j.immuni.2018.08.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6148384PMC
September 2018

DNA Loading and Release Using Custom-Tailored Poly(l-lysine) Surfaces.

ACS Appl Mater Interfaces 2017 Jul 10;9(28):23370-23378. Epub 2017 Jul 10.

Departments of Chemistry and Chemical Engineering and the Texas Center for Superconductivity, University of Houston , Houston, Texas 77204-5003, United States.

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http://dx.doi.org/10.1021/acsami.7b05024DOI Listing
July 2017

Identification of potential glucocorticoid receptor therapeutic targets in multiple myeloma.

Nucl Recept Signal 2015 22;13:e006. Epub 2015 Dec 22.

Northwestern University, Robert H. Lurie Comprehensive Cancer Center, Chicago, Illinois (ALT, JQ, NLK, STR); Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, Texas (CC, JJW, KR); University of Houston, Department of Biology and Biochemistry, Houston, Texas (JJW, PHG) and Feinberg School of Medicine, Northwestern University, Department of Medicine, Chicago, Illinois (STR).

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http://dx.doi.org/10.1621/nrs.13006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4693629PMC
July 2016

ΔNp63/DGCR8-Dependent MicroRNAs Mediate Therapeutic Efficacy of HDAC Inhibitors in Cancer.

Cancer Cell 2016 06;29(6):874-888

Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA; Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA; Graduate School of Biomedical Sciences, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA; Center for RNA Interference and Non-Coding RNA, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, TX 77030, USA. Electronic address:

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http://dx.doi.org/10.1016/j.ccell.2016.04.016DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4908836PMC
June 2016

Transmembrane adaptor protein PAG1 is a novel tumor suppressor in neuroblastoma.

Oncotarget 2016 Apr;7(17):24018-26

Department of Pediatrics, Section of Hematology-Oncology, Texas Children's Cancer Center, and Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.18632/oncotarget.8116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5029681PMC
April 2016

Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1.

Dev Biol 2016 Jan 6;409(1):26-38. Epub 2015 Nov 6.

Department of Biology and Biochemistry, University of Houston, Houston, TX 77204, United States.

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http://dx.doi.org/10.1016/j.ydbio.2015.11.005DOI Listing
January 2016

Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.

Mol Endocrinol 2015 Nov 1;29(11):1634-45. Epub 2015 Oct 1.

Center for Nuclear Receptors and Cell Signaling (P.J., F.M., C.W.), Department of Biology and Biochemistry, and Department of Biology and Biochemistry (P.H.G.), University of Houston, Houston, Texas 77204; Molecular and Human Genetics (C.C., K.R.) and Human Genome Sequencing Center (P.H.G.), Baylor College of Medicine, Houston, Texas 77030; Helicos Biosciences (T.R., J.F.T.), Cambridge, Massachusetts 02139; SciLifeLab, School of Biotechnology (C.W.), The Royal Institute of Technology-KTH, 17121 Solna, Sweden; and Department of Biosciences and Nutrition (C.W.), Novum, Karolinska Institutet, 14183 Stockholm, Sweden.

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http://dx.doi.org/10.1210/me.2015-1153DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627604PMC
November 2015

Identification of p38β as a therapeutic target for the treatment of Sézary syndrome.

J Invest Dermatol 2015 Feb 22;135(2):599-608. Epub 2014 Aug 22.

Robert H. Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA; Division of Hematology and Oncology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois, USA; City of Hope Comprehensive Cancer Center, Duarte, California, USA. Electronic address:

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http://dx.doi.org/10.1038/jid.2014.367DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4289446PMC
February 2015

IAPP-driven metabolic reprogramming induces regression of p53-deficient tumours in vivo.

Nature 2015 Jan 17;517(7536):626-30. Epub 2014 Nov 17.

1] Department of Molecular and Cellular Oncology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030, USA [2] Department of Translational Molecular Pathology, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030, USA [3] Graduate School of Biomedical Sciences, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030, USA [4] Metastasis Research Center, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1038/nature13910DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4312210PMC
January 2015

Functional analysis of miR-34c as a putative tumor suppressor in high-grade serous ovarian cancer.

Biol Reprod 2014 Nov 1;91(5):113. Epub 2014 Oct 1.

Department of Pathology and Immunology, Baylor College of Medicine, Houston, Texas Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas Department of Pharmacology, Baylor College of Medicine, Houston, Texas Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas

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http://dx.doi.org/10.1095/biolreprod.114.121988DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6366460PMC
November 2014

siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster.

Proc Natl Acad Sci U S A 2014 Nov 3;111(46):16460-5. Epub 2014 Nov 3.

Department of Biological Sciences, Wayne State University, Detroit, MI 48020;

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http://dx.doi.org/10.1073/pnas.1410534111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4246271PMC
November 2014

Induced multipotency in adult keratinocytes through down-regulation of ΔNp63 or DGCR8.

Proc Natl Acad Sci U S A 2014 Feb 21;111(5):E572-81. Epub 2014 Jan 21.

Departments of Biochemistry and Molecular Biology, Immunology, and Dermatology and Graduate School of Biomedical Sciences, The University of Texas M. D. Anderson Cancer Center, Houston, TX 77030.

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http://dx.doi.org/10.1073/pnas.1319743111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3918754PMC
February 2014

SOX2 regulates YAP1 to maintain stemness and determine cell fate in the osteo-adipo lineage.

Cell Rep 2013 Jun 20;3(6):2075-87. Epub 2013 Jun 20.

National Creative Initiatives Center for Cell Division and Differentiation, Department of Biological Sciences, Korea Advanced Institute of Science and Technology (KAIST), 373-1 Guseoung-D, Yuseong-G, Daejeon 305-701, Korea.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5053763PMC
http://dx.doi.org/10.1016/j.celrep.2013.05.029DOI Listing
June 2013

The repertoire and features of human platelet microRNAs.

PLoS One 2012 4;7(12):e50746. Epub 2012 Dec 4.

Centre Hospitalier Universitaire de Québec Research Center/Centre hospitalier de l'Université Laval, Quebec, Quebec, Canada.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0050746PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3514217PMC
May 2013

Expression and phosphorylation of the AS160_v2 splice variant supports GLUT4 activation and the Warburg effect in multiple myeloma.

Cancer Metab 2013 May 29;1(1):14. Epub 2013 May 29.

Robert H, Lurie Comprehensive Cancer Center, Feinberg School of Medicine, Northwestern University, 303 E, Superior Street, Lurie Building 3-250, Chicago, IL 606011, USA.

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http://cancerandmetabolism.biomedcentral.com/articles/10.118
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http://dx.doi.org/10.1186/2049-3002-1-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4178207PMC
May 2013

A gold nanoparticle platform for the delivery of functional microRNAs into cancer cells.

Biomaterials 2013 Jan 27;34(3):807-16. Epub 2012 Oct 27.

Department of Biology & Biochemistry, University of Houston, 4800 Calhoun Road, Houston, TX 77204, USA.

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http://dx.doi.org/10.1016/j.biomaterials.2012.10.023DOI Listing
January 2013

Modulation of microRNA Activity by Semi-microRNAs.

Front Genet 2012 4;3:99. Epub 2012 Jun 4.

CHUQ Research Center/CHUL Quebec, QC, Canada.

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http://dx.doi.org/10.3389/fgene.2012.00099DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3366366PMC
October 2012

miRNA data analysis: next-gen sequencing.

Methods Mol Biol 2012 ;822:273-88

Department of Biology and Biochemistry, University of Houston, Houston, TX, USA.

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http://link.springer.com/10.1007/978-1-61779-427-8_19
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http://dx.doi.org/10.1007/978-1-61779-427-8_19DOI Listing
April 2012

miRNA regulatory circuits in ES cells differentiation: a chemical kinetics modeling approach.

PLoS One 2011 19;6(10):e23263. Epub 2011 Oct 19.

Department of Mathematics, University of Houston, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0023263PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3198445PMC
February 2012

Role for microRNAs in regulating glucocorticoid response and resistance in multiple myeloma.

Horm Cancer 2011 Jun;2(3):182-9

Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL 60611, USA.

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http://dx.doi.org/10.1007/s12672-011-0072-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3725966PMC
June 2011

Functional microRNA involved in endometriosis.

Mol Endocrinol 2011 May 24;25(5):821-32. Epub 2011 Mar 24.

Department of Obstetrics and Gynecology, Baylor College of Medicine, 1709 Dryden Drive, Suite 1100, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1210/me.2010-0371DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3082329PMC
May 2011

MicroRNA-1258 suppresses breast cancer brain metastasis by targeting heparanase.

Cancer Res 2011 Feb 25;71(3):645-54. Epub 2011 Jan 25.

Department of Pathology and Immunology, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1158/0008-5472.CAN-10-1910DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3078691PMC
February 2011

Large-scale integration of MicroRNA and gene expression data for identification of enriched microRNA-mRNA associations in biological systems.

Methods Mol Biol 2010 ;667:297-315

Department of Biology & Biochemistry, University of Houston, Houston, TX, USA.

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http://dx.doi.org/10.1007/978-1-60761-811-9_20DOI Listing
January 2011

Analysis of microRNA expression in the prepubertal testis.

PLoS One 2010 Dec 29;5(12):e15317. Epub 2010 Dec 29.

Department of Pathology, Baylor College of Medicine, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0015317PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3012074PMC
December 2010

Using effective subnetworks to predict selected properties of gene networks.

PLoS One 2010 Oct 8;5(10):e13080. Epub 2010 Oct 8.

Department of Physics, University of Houston, Houston, Texas, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0013080PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951892PMC
October 2010

A theory for the arrangement of sensory organs in Drosophila.

Chaos 2010 Mar;20(1):013132

Department of Physics, University of Houston, Houston, Texas 77204, USA.

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http://dx.doi.org/10.1063/1.3368727DOI Listing
March 2010

A putative role for microRNA-205 in mammary epithelial cell progenitors.

J Cell Sci 2010 Feb 26;123(Pt 4):606-18. Epub 2010 Jan 26.

Program in Developmental Biology, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1242/jcs.056812DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818197PMC
February 2010

The completion of the Mammalian Gene Collection (MGC).

Authors:
Gary Temple Daniela S Gerhard Rebekah Rasooly Elise A Feingold Peter J Good Cristen Robinson Allison Mandich Jeffrey G Derge Jeanne Lewis Debonny Shoaf Francis S Collins Wonhee Jang Lukas Wagner Carolyn M Shenmen Leonie Misquitta Carl F Schaefer Kenneth H Buetow Tom I Bonner Linda Yankie Ming Ward Lon Phan Alex Astashyn Garth Brown Catherine Farrell Jennifer Hart Melissa Landrum Bonnie L Maidak Michael Murphy Terence Murphy Bhanu Rajput Lillian Riddick David Webb Janet Weber Wendy Wu Kim D Pruitt Donna Maglott Adam Siepel Brona Brejova Mark Diekhans Rachel Harte Robert Baertsch Jim Kent David Haussler Michael Brent Laura Langton Charles L G Comstock Michael Stevens Chaochun Wei Marijke J van Baren Kourosh Salehi-Ashtiani Ryan R Murray Lila Ghamsari Elizabeth Mello Chenwei Lin Christa Pennacchio Kirsten Schreiber Nicole Shapiro Amber Marsh Elizabeth Pardes Troy Moore Anita Lebeau Mike Muratet Blake Simmons David Kloske Stephanie Sieja James Hudson Praveen Sethupathy Michael Brownstein Narayan Bhat Joseph Lazar Howard Jacob Chris E Gruber Mark R Smith John McPherson Angela M Garcia Preethi H Gunaratne Jiaqian Wu Donna Muzny Richard A Gibbs Alice C Young Gerard G Bouffard Robert W Blakesley Jim Mullikin Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Martin Hirst Thomas Zeng Kane Tse Michelle Moksa Merinda Deng Kevin Ma Diana Mah Johnson Pang Greg Taylor Eric Chuah Athena Deng Keith Fichter Anne Go Stephanie Lee Jing Wang Malachi Griffith Ryan Morin Richard A Moore Michael Mayo Sarah Munro Susan Wagner Steven J M Jones Robert A Holt Marco A Marra Sun Lu Shuwei Yang James Hartigan Marcus Graf Ralf Wagner Stanley Letovksy Jacqueline C Pulido Keith Robison Dominic Esposito James Hartley Vanessa E Wall Ralph F Hopkins Osamu Ohara Stefan Wiemann

Expression profiling of microRNAs by deep sequencing.

Brief Bioinform 2009 Sep 30;10(5):490-7. Epub 2009 Mar 30.

Dan L. Duncan Cancer Center Division of Biostatistics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.1093/bib/bbp019DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2733187PMC
September 2009

Embryonic stem cell microRNAs: defining factors in induced pluripotent (iPS) and cancer (CSC) stem cells?

Curr Stem Cell Res Ther 2009 Sep;4(3):168-77

Department of Biology & Biochemistry, University of Houston, Houston, TX 77204, USA.

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September 2009

A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions.

RNA 2008 Nov 23;14(11):2290-6. Epub 2008 Sep 23.

The Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1261/rna.1188208DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2578856PMC
November 2008

Deletion of Dicer in somatic cells of the female reproductive tract causes sterility.

Mol Endocrinol 2008 Oct 7;22(10):2336-52. Epub 2008 Aug 7.

Department of Pathology, Baylor College of Medicine, One Baylor Plaza, Houston, Texas 77030, USA.

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http://dx.doi.org/10.1210/me.2008-0142DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2582529PMC
October 2008

Advances in genome biology and technology.

Expert Rev Mol Diagn 2004 Nov;4(6):757-60

Human Genome Sequencing Center, FACMG Department of Pathology, Baylor College of Medicine, Texas Children's Hospital, Houston, TX 77030, USA.

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http://dx.doi.org/10.1586/14737159.4.6.757DOI Listing
November 2004

The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

Authors:
Daniela S Gerhard Lukas Wagner Elise A Feingold Carolyn M Shenmen Lynette H Grouse Greg Schuler Steven L Klein Susan Old Rebekah Rasooly Peter Good Mark Guyer Allison M Peck Jeffery G Derge David Lipman Francis S Collins Wonhee Jang Steven Sherry Mike Feolo Leonie Misquitta Eduardo Lee Kirill Rotmistrovsky Susan F Greenhut Carl F Schaefer Kenneth Buetow Tom I Bonner David Haussler Jim Kent Mark Kiekhaus Terry Furey Michael Brent Christa Prange Kirsten Schreiber Nicole Shapiro Narayan K Bhat Ralph F Hopkins Florence Hsie Tom Driscoll M Bento Soares Tom L Casavant Todd E Scheetz Michael J Brown-stein Ted B Usdin Shiraki Toshiyuki Piero Carninci Yulan Piao Dawood B Dudekula Minoru S H Ko Koichi Kawakami Yutaka Suzuki Sumio Sugano C E Gruber M R Smith Blake Simmons Troy Moore Richard Waterman Stephen L Johnson Yijun Ruan Chia Lin Wei S Mathavan Preethi H Gunaratne Jiaqian Wu Angela M Garcia Stephen W Hulyk Edwin Fuh Ye Yuan Anna Sneed Carla Kowis Anne Hodgson Donna M Muzny John McPherson Richard A Gibbs Jessica Fahey Erin Helton Mark Ketteman Anuradha Madan Stephanie Rodrigues Amy Sanchez Michelle Whiting Anup Madari Alice C Young Keith D Wetherby Steven J Granite Peggy N Kwong Charles P Brinkley Russell L Pearson Gerard G Bouffard Robert W Blakesly Eric D Green Mark C Dickson Alex C Rodriguez Jane Grimwood Jeremy Schmutz Richard M Myers Yaron S N Butterfield Malachi Griffith Obi L Griffith Martin I Krzywinski Nancy Liao Ryan Morin Ryan Morrin Diana Palmquist Anca S Petrescu Ursula Skalska Duane E Smailus Jeff M Stott Angelique Schnerch Jacqueline E Schein Steven J M Jones Robert A Holt Agnes Baross Marco A Marra Sandra Clifton Kathryn A Makowski Stephanie Bosak Joel Malek

Genome Res 2004 Oct;14(10B):2121-7

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http://dx.doi.org/10.1101/gr.2596504DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC528928PMC
October 2004

Concatenation cDNA sequencing for transcriptome analysis.

C R Biol 2003 Oct-Nov;326(10-11):971-7

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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May 2004

Large-scale RT-PCR recovery of full-length cDNA clones.

Biotechniques 2004 Apr;36(4):690-6, 698-700

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.

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http://dx.doi.org/10.2144/04364DD03DOI Listing
April 2004

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Proc Natl Acad Sci U S A 2002 Dec 11;99(26):16899-903. Epub 2002 Dec 11.

National Cancer Institute, Bethessda, MD 20892-2580, USA.

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http://dx.doi.org/10.1073/pnas.242603899DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC139241PMC
December 2002