Pratik Mukherjee

Pratik Mukherjee

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Pratik Mukherjee

Publications by authors named "Pratik Mukherjee"

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Replication and generalization in applied neuroimaging.

Neuroimage 2019 Nov 26;202:116048. Epub 2019 Jul 26.

Department of Psychology, Stanford University, 450 Serra Mall, Jordan Hall Building, 94305, Stanford, CA, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2019.116048DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6819246PMC
November 2019

Expert-level detection of acute intracranial hemorrhage on head computed tomography using deep learning.

Proc Natl Acad Sci U S A 2019 Nov 21;116(45):22737-22745. Epub 2019 Oct 21.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94107

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http://dx.doi.org/10.1073/pnas.1908021116DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6842581PMC
November 2019

Longitudinal increases in structural connectome segregation and functional connectome integration are associated with better recovery after mild TBI.

Hum Brain Mapp 2019 10 11;40(15):4441-4456. Epub 2019 Jul 11.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, California.

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http://dx.doi.org/10.1002/hbm.24713DOI Listing
October 2019

Association between plasma GFAP concentrations and MRI abnormalities in patients with CT-negative traumatic brain injury in the TRACK-TBI cohort: a prospective multicentre study.

Lancet Neurol 2019 Oct 23;18(10):953-961. Epub 2019 Aug 23.

Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, USA; Brain and Spinal Injury Center, Zuckerberg San Francisco General Hospital, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/S1474-4422(19)30282-0DOI Listing
October 2019

Disrupted White Matter Microstructure of the Cerebellar Peduncles in Scholastic Athletes After Concussion.

Front Neurol 2019 15;10:518. Epub 2019 May 15.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, United States.

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http://dx.doi.org/10.3389/fneur.2019.00518DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6530417PMC
May 2019

Diffusion tensor tractography in children with sensory processing disorder: Potentials for devising machine learning classifiers.

Neuroimage Clin 2019 24;23:101831. Epub 2019 Apr 24.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA, United States of America; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, CA, United States of America. Electronic address:

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http://dx.doi.org/10.1016/j.nicl.2019.101831DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6488562PMC
April 2019

Longitudinal Resting State Functional Connectivity Predicts Clinical Outcome in Mild Traumatic Brain Injury.

J Neurotrauma 2019 Mar 3;36(5):650-660. Epub 2018 Oct 3.

2 Department of Neurology, Hospital for Special Surgery , New York, New York.

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http://dx.doi.org/10.1089/neu.2018.5739DOI Listing
March 2019

Risk of Posttraumatic Stress Disorder and Major Depression in Civilian Patients After Mild Traumatic Brain Injury: A TRACK-TBI Study.

JAMA Psychiatry 2019 Mar;76(3):249-258

Department of Physical Medicine and Rehabilitation, Harvard Medical School, Boston, Massachusetts.

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http://dx.doi.org/10.1001/jamapsychiatry.2018.4288DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6439818PMC
March 2019

Delineation of early brain development from fetuses to infants with diffusion MRI and beyond.

Neuroimage 2019 01 12;185:836-850. Epub 2018 Apr 12.

Radiology Research, Children's Hospital of Philadelphia, PA, United States; Department of Radiology, Perelman School of Medicine, University of Pennsylvania, PA, United States. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2018.04.017DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6185831PMC
January 2019

White Matter Microstructure Associations of Cognitive and Visuomotor Control in Children: A Sensory Processing Perspective.

Front Integr Neurosci 2018 14;12:65. Epub 2019 Jan 14.

Neuroscape Center, Departments of Neurology, Pediatrics, Physiology, Radiology, and Psychiatry, University of California, San Francisco, San Francisco, CA, United States.

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http://dx.doi.org/10.3389/fnint.2018.00065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6339953PMC
January 2019

Antisynthetase syndrome: Initial and follow-up imaging features.

Lung India 2018 Nov-Dec;35(6):523-525

Department of Diagnostic Radiology, Khoo Teck Puat Hospital, 90 Yishun Central, Singapore.

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http://www.lungindia.com/text.asp?2018/35/6/523/244507
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http://dx.doi.org/10.4103/lungindia.lungindia_4_18DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6219130PMC
November 2018

Functional and Structural Brain Plasticity in Adult Onset Single-Sided Deafness.

Front Hum Neurosci 2018 27;12:474. Epub 2018 Nov 27.

Department of Otolaryngology-Head and Neck Surgery, University of California, San Francisco, San Francisco, CA, United States.

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http://dx.doi.org/10.3389/fnhum.2018.00474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6277679PMC
November 2018

Brain MR Imaging Findings and Associated Outcomes in Carriers of the Reciprocal Copy Number Variation at 16p11.2.

Radiology 2018 01 8;286(1):217-226. Epub 2017 Aug 8.

From the Departments of Radiology (J.P.O., O.A.G., S.S.N., P.M.) and Neurology (P.B., N.P., T.T., E.H.S.), University of California, San Francisco, 675 Nelson Rising Lane, San Francisco, CA 94158; Department of Biostatistics, Columbia University, New York, NY (Q.C., J.L., D.D.); Department of Medicine and Pediatrics, Baylor School of Medicine, Houston, Tex (J.V.H.); Department of Radiology, Children's Hospital of Philadelphia, Philadelphia, Pa (J.I.B., T.P.R.); and Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, Mass (R.B.).

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http://pubs.rsna.org/doi/10.1148/radiol.2017162934
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http://dx.doi.org/10.1148/radiol.2017162934DOI Listing
January 2018

Emergency department blood alcohol level associates with injury factors and six-month outcome after uncomplicated mild traumatic brain injury.

J Clin Neurosci 2017 Nov 5;45:293-298. Epub 2017 Aug 5.

Department of Neurological Surgery, University of California, San Francisco, San Francisco, CA, USA; Brain and Spinal Injury Center, San Francisco General Hospital, San Francisco, CA, USA. Electronic address:

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http://dx.doi.org/10.1016/j.jocn.2017.07.022DOI Listing
November 2017

Brain network eigenmodes provide a robust and compact representation of the structural connectome in health and disease.

PLoS Comput Biol 2017 Jun 22;13(6):e1005550. Epub 2017 Jun 22.

Department of Radiology, Weill Cornell Medical College, New York, New York, United States of America.

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http://dx.doi.org/10.1371/journal.pcbi.1005550DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5480812PMC
June 2017

Turtleback liver.

Abdom Radiol (NY) 2017 Jan;42(1):326-327

Department of Diagnostic Radiology, Khoo Teck Puat Hospital, 90, Yishun Central, Singapore, 768828, Singapore.

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http://dx.doi.org/10.1007/s00261-016-0849-xDOI Listing
January 2017

Epigastric pain: a life-threatening condition.

Emerg Med J 2016 Nov;33(11):829-830

Department of Diagnostic Radiology, Khoo Teck Puat Hospital, Singapore.

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http://dx.doi.org/10.1136/emermed-2015-205640DOI Listing
November 2016

Periventricular White Matter Is a Nexus for Network Connectivity in the Human Brain.

Brain Connect 2016 09;6(7):548-57

Department of Radiology, University of California , San Francisco, San Francisco, California.

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http://dx.doi.org/10.1089/brain.2016.0431DOI Listing
September 2016

Reciprocal white matter alterations due to 16p11.2 chromosomal deletions versus duplications.

Hum Brain Mapp 2016 08 24;37(8):2833-48. Epub 2016 May 24.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, 185 Berry Street, San Francisco, California, 94107.

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http://dx.doi.org/10.1002/hbm.23211DOI Listing
August 2016

A Rare Cause of a Positive Fecal Occult Blood Test.

Gastroenterology 2016 Aug 1;151(2):248-9. Epub 2016 Jul 1.

Department of Laboratory Medicine, Khoo Teck Puat Hospital, Yishun Central Singapore.

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http://dx.doi.org/10.1053/j.gastro.2016.04.045DOI Listing
August 2016

Evaluating metabolites in patients with major depressive disorder who received mindfulness-based cognitive therapy and healthy controls using short echo MRSI at 7 Tesla.

MAGMA 2016 Jun 9;29(3):523-33. Epub 2016 Feb 9.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, Radiology Box 2532, Byers Hall, 1700 4th Street, San Francisco, CA, 94158-2532, USA.

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http://dx.doi.org/10.1007/s10334-016-0526-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4891376PMC
June 2016

The "gallbladder pearl necklace" sign.

Abdom Radiol (NY) 2016 05;41(5):1001-2

Department of Diagnostic Radiology, Khoo Teck Puat Hospital, 90, Yishun Central, Singapore, 768828, Singapore.

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http://dx.doi.org/10.1007/s00261-015-0631-5DOI Listing
May 2016

White Matter Changes of Neurite Density and Fiber Orientation Dispersion during Human Brain Maturation.

PLoS One 2015 26;10(6):e0123656. Epub 2015 Jun 26.

Department of Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, California, United States of America; Program in Bioengineering, University of California San Francisco, San Francisco, California, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0123656PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4482659PMC
April 2016

Abnormal auditory and language pathways in children with 16p11.2 deletion.

Neuroimage Clin 2015 1;9:50-7. Epub 2015 Aug 1.

Department of Radiology, Children's Hospital of Philadelphia, 34th and Civic Center Blvd, Philadelphia, PA 19104, USA ; Department of Radiology, Perelman School of Medicine University of Pennsylvania, 34th and Civic Center Blvd, Philadelphia, PA 19104, USA.

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http://dx.doi.org/10.1016/j.nicl.2015.07.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4543079PMC
April 2016

Chronic Post-Concussion Neurocognitive Deficits. I. Relationship with White Matter Integrity.

Front Hum Neurosci 2016 10;10:35. Epub 2016 Feb 10.

Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco San Francisco, CA USA.

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http://journal.frontiersin.org/Article/10.3389/fnhum.2016.00
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http://dx.doi.org/10.3389/fnhum.2016.00035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4748060PMC
February 2016

Edge density imaging: mapping the anatomic embedding of the structural connectome within the white matter of the human brain.

Neuroimage 2015 Apr 12;109:402-17. Epub 2015 Jan 12.

Department of Radiology & Biomedical Imaging, University of California, San Francisco, USA; Department of Bioengineering & Therapeutic Sciences, University of California, San Francisco, USA. Electronic address:

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http://dx.doi.org/10.1016/j.neuroimage.2015.01.007DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4340739PMC
April 2015

Stochastic geometric network models for groups of functional and structural connectomes.

Neuroimage 2014 Nov 25;101:473-84. Epub 2014 Jul 25.

Department of Radiology & Biomedical Imaging, University of California, San Francisco, USA; Department of Bioengineering & Therapeutic Sciences, University of California, San Francisco, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2014.07.039DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165788PMC
November 2014

Opposing brain differences in 16p11.2 deletion and duplication carriers.

J Neurosci 2014 Aug;34(34):11199-211

Harvard University, Department of Psychology and Center for Brain Science, Cambridge, Massachusetts 02138, Psychiatry, Massachusetts General Hospital, Boston, Massachusetts 02114, Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital, Charlestown, Massachusetts 02129,

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http://dx.doi.org/10.1523/JNEUROSCI.1366-14.2014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4138332PMC
August 2014

Aberrant white matter microstructure in children with 16p11.2 deletions.

J Neurosci 2014 Apr;34(18):6214-23

Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California 94107, Program in Bioengineering, Department of Neurology, University of California, San Francisco, San Francisco, California 94158, Department of Radiology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania 19104, Simons Foundation, New York, New York 10010, Departments of Pediatrics and Medicine, Columbia University Medical Center, New York, New York 10032, and Center for Brain Science, Harvard University, Cambridge, Massachusetts 02138.

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http://dx.doi.org/10.1523/JNEUROSCI.4495-13.2014DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6608115PMC
April 2014

Abnormal white matter microstructure in children with sensory processing disorders.

Neuroimage Clin 2013 23;2:844-53. Epub 2013 Jun 23.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, 185 Berry Street, San Francisco, CA 94107, USA ; Program in Bioengineering, University of California, San Francisco, 1700 4th St., San Francisco, CA 94158, USA.

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http://dx.doi.org/10.1016/j.nicl.2013.06.009DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3778265PMC
November 2013

Resting state magnetoencephalography functional connectivity in traumatic brain injury.

J Neurosurg 2013 Jun 19;118(6):1306-16. Epub 2013 Apr 19.

Department of Neurological Surgery, University of California, San Francisco, California 94107-0946, USA.

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http://dx.doi.org/10.3171/2013.3.JNS12398DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071964PMC
June 2013

The structural connectome of the human brain in agenesis of the corpus callosum.

Neuroimage 2013 Apr 23;70:340-55. Epub 2012 Dec 23.

Department of Radiology & Biomedical Imaging, University of California, San Francisco, CA 94107, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2012.12.031DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4127170PMC
April 2013

Pediatric brain injury: can DTI scalars predict functional outcome?

Pediatr Radiol 2013 Jan 4;43(1):55-9. Epub 2013 Jan 4.

Department of Radiology and Biomedical Imaging, University of California-San Francisco, 1 Irving St, AC112, Box 2512, San Francisco, CA 94143, USA.

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http://dx.doi.org/10.1007/s00247-012-2481-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3755904PMC
January 2013

Independent component analysis of DTI reveals multivariate microstructural correlations of white matter in the human brain.

Hum Brain Mapp 2012 Jun 12;33(6):1431-51. Epub 2011 May 12.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, California 94107-0946, USA.

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http://dx.doi.org/10.1002/hbm.21292DOI Listing
June 2012

Epileptic foci.

J Neurosurg 2011 Jun 25;114(6):1691-2; discussion 1692. Epub 2011 Feb 25.

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http://dx.doi.org/10.3171/2010.12.JNS101755DOI Listing
June 2011

Spatial HARDI: improved visualization of complex white matter architecture with Bayesian spatial regularization.

Neuroimage 2011 Jan 27;54(1):396-409. Epub 2010 Jul 27.

Department of Radiology, Weill Medical College of Cornell University, New York, NY 10044, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2010.07.040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2962674PMC
January 2011

Diffusion tensor imaging of mild traumatic brain injury.

J Head Trauma Rehabil 2010 Jul-Aug;25(4):241-55

Weill Cornell Medical College, New York, NY, USA.

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http://dx.doi.org/10.1097/HTR.0b013e3181e52c2aDOI Listing
October 2010

Visual tracking synchronization as a metric for concussion screening.

J Head Trauma Rehabil 2010 Jul-Aug;25(4):293-305

Brain Trauma Foundation, New York, NY 10007, USA.

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http://dx.doi.org/10.1097/HTR.0b013e3181e67936DOI Listing
October 2010

Common data elements in radiologic imaging of traumatic brain injury.

J Magn Reson Imaging 2010 Sep;32(3):516-43

Department of Radiology and Biomedical Engineering, Wayne State University, Detroit, Michigan 48201, USA.

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http://dx.doi.org/10.1002/jmri.22259DOI Listing
September 2010

Diffusion tensor imaging of Aicardi syndrome.

Pediatr Neurol 2010 Aug;43(2):87-91

Department of Neurology, University of California, San Francisco, San Francisco, California 94143-0114, USA.

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http://dx.doi.org/10.1016/j.pediatrneurol.2010.03.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3116113PMC
August 2010

Microstructural correlations of white matter tracts in the human brain.

Neuroimage 2010 Jun 4;51(2):531-41. Epub 2010 Mar 4.

Department of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143-0628, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2010.02.072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2856800PMC
June 2010

High-resolution phased-array MRI of the human brain at 7 tesla: initial experience in multiple sclerosis patients.

J Neuroimaging 2010 Apr 29;20(2):141-7. Epub 2009 Jan 29.

UCSF/UC Berkeley Joint Graduate Group in Bioengineering, University of California, San Francisco and Berkeley, CA 94017, USA.

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http://dx.doi.org/10.1111/j.1552-6569.2008.00338.xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2874605PMC
April 2010

Diffusion imaging and tractography of congenital brain malformations.

Pediatr Radiol 2010 Jan 24;40(1):59-67. Epub 2009 Nov 24.

Department of Neurology, University of California, San Francisco, San Francisco, CA 94143-0628, USA.

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http://dx.doi.org/10.1007/s00247-009-1448-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2788138PMC
January 2010

Diffusion imaging of congenital brain malformations.

Semin Pediatr Neurol 2009 Sep;16(3):111-9

Department of Neurology, University of California, San Francisco, CA, USA.

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http://dx.doi.org/10.1016/j.spen.2009.07.002DOI Listing
September 2009

Clinical applications of MR diffusion and perfusion imaging: Preface.

Magn Reson Imaging Clin N Am 2009 May;17(2):xi-xii

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http://dx.doi.org/10.1016/j.mric.2009.03.011DOI Listing
May 2009

High-resolution intracranial MRA at 7T using autocalibrating parallel imaging: initial experience in vascular disease patients.

Magn Reson Imaging 2008 Dec 27;26(10):1329-33. Epub 2008 May 27.

Department of Radiology, University of California, San Francisco, CA 94143-2512, USA.

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http://dx.doi.org/10.1016/j.mri.2008.04.002DOI Listing
December 2008

Structural dissociation of attentional control and memory in adults with and without mild traumatic brain injury.

Brain 2008 Dec 24;131(Pt 12):3209-21. Epub 2008 Oct 24.

Sackler Institute for Developmental Psychobiology,Weill Cornell Medical College, New York, NY, USA.

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https://academic.oup.com/brain/article-lookup/doi/10.1093/br
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http://dx.doi.org/10.1093/brain/awn247DOI Listing
December 2008

Phased array 3D MR spectroscopic imaging of the brain at 7 T.

Magn Reson Imaging 2008 Nov 16;26(9):1201-6. Epub 2008 May 16.

Joint UCSF/UC Berkeley Graduate Group in Bioengineering, University of California, San Francisco and Berkeley, CA 94143, USA.

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http://dx.doi.org/10.1016/j.mri.2008.03.006DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2821191PMC
November 2008

Focal lesions in acute mild traumatic brain injury and neurocognitive outcome: CT versus 3T MRI.

J Neurotrauma 2008 Sep;25(9):1049-56

Neurological Surgery, University of California, San Francisco, California 94143, USA.

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http://www.liebertpub.com/doi/10.1089/neu.2008.0566
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http://dx.doi.org/10.1089/neu.2008.0566DOI Listing
September 2008

Probabilistic streamline q-ball tractography using the residual bootstrap.

Neuroimage 2008 Jan 25;39(1):215-22. Epub 2007 Aug 25.

UCSF Department of Radiology, University of California San Francisco, 185 Berry St., Suite 350, San Francisco, CA 94107, USA.

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http://dx.doi.org/10.1016/j.neuroimage.2007.08.021DOI Listing
January 2008

Visualizing white matter pathways in the living human brain: diffusion tensor imaging and beyond.

Neuroimaging Clin N Am 2007 Nov;17(4):407-26, vii

Department of Radiology, University of California at San Francisco, 505 Parnassus Avenue, Box 0628, San Francisco, CA 94143-0628, USA.

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http://dx.doi.org/10.1016/j.nic.2007.07.002DOI Listing
November 2007