Pjotr Prins

Pjotr Prins

UNVERIFIED PROFILE

Are you Pjotr Prins?   Register this Author

Register author
Pjotr Prins

Pjotr Prins

Publications by authors named "Pjotr Prins"

Are you Pjotr Prins?   Register this Author

33Publications

868Reads

36Profile Views

Systems Genetics for Evolutionary Studies.

Methods Mol Biol 2019 ;1910:635-652

Groningen Bioinformatics Centre, GBB, University of Groningen, AG, Groningen, Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-9074-0_21DOI Listing
January 2020

Scalable Workflows and Reproducible Data Analysis for Genomics.

Methods Mol Biol 2019 ;1910:723-745

Department of Genetics, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-9074-0_24DOI Listing
January 2020

Sharing Programming Resources Between Bio* Projects.

Methods Mol Biol 2019 ;1910:747-766

Department of Genetics, Center for Molecular Medicine, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-9074-0_25DOI Listing
January 2020

Genetic Contribution to Initial and Progressive Alcohol Intake Among Recombinant Inbred Strains of Mice.

Front Genet 2018 25;9:370. Epub 2018 Sep 25.

Department of Genetics, Genomics, and Informatics, The University of Tennessee Health Science Center, Memphis, TN, United States.

View Article

Download full-text PDF

Source
https://www.frontiersin.org/article/10.3389/fgene.2018.00370
Publisher Site
http://dx.doi.org/10.3389/fgene.2018.00370DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6167410PMC
September 2018

Evaluating the performance of tools used to call minority variants from whole genome short-read data.

Wellcome Open Res 2018 13;3:21. Epub 2018 Sep 13.

KEMRI-Wellcome Trust Research Programme, KEMRI Centre for Geographic Medicine Research - Coast, Kilifi, Kenya.

View Article

Download full-text PDF

Source
https://wellcomeopenresearch.org/articles/3-21/v2
Publisher Site
http://dx.doi.org/10.12688/wellcomeopenres.13538.2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6234735.2PMC
September 2018

GeneNetwork: A Toolbox for Systems Genetics.

Methods Mol Biol 2017 ;1488:75-120

Department of Genetics, Genomics, and Informatics, University of Tennessee Health Science Center, 855 Monroe Ave., Suite 515, Memphis, TN, 38163, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-4939-6427-7_4DOI Listing
January 2018

An Integrated Systems Genetics and Omics Toolkit to Probe Gene Function.

Cell Syst 2018 Jan 30;6(1):90-102.e4. Epub 2017 Nov 30.

Laboratory for Integrative and Systems Physiology, Institute of Bioengineering, École Polytechnique Fédérale de Lausanne, Lausanne 1015, Switzerland. Electronic address:

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.cels.2017.10.016DOI Listing
January 2018

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Plant J 2017 Mar 13;89(6):1225-1235. Epub 2017 Feb 13.

Laboratory of Nematology, Wageningen University, Droevendaalsesteeg 1, Wageningen, NL-6708 PB, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1111/tpj.13457DOI Listing
March 2017

Transcriptional and Linkage Analyses Identify Loci that Mediate the Differential Macrophage Response to Inflammatory Stimuli and Infection.

PLoS Genet 2015 Oct 28;11(10):e1005619. Epub 2015 Oct 28.

Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America; Department of Pathology, Microbiology & Immunology, University of California, Davis, Davis, California, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pgen.1005619DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4625001PMC
October 2015

Toward effective software solutions for big biology.

Nat Biotechnol 2015 Jul;33(7):686-7

Office of the Director, The National Institutes of Health, Bethesda, Maryland, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nbt.3240DOI Listing
July 2015

Sambamba: fast processing of NGS alignment formats.

Bioinformatics 2015 Jun 19;31(12):2032-4. Epub 2015 Feb 19.

Department of Statistical Simulation, St. Petersburg State University, St. Petersburg, Russia, Illumina Cambridge, Cambridge, UK, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences, Utrecht, The Netherlands, Department of Medical Genetics, Institute for Molecular Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands and Department of Nematology, Wageningen University, Wageningen, The Netherlands Department of Statistical Simulation, St. Petersburg State University, St. Petersburg, Russia, Illumina Cambridge, Cambridge, UK, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences, Utrecht, The Netherlands, Department of Medical Genetics, Institute for Molecular Medicine, University Medical Centre Utrecht, Utrecht, The Netherlands and Department of Nematology, Wageningen University, Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btv098DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765878PMC
June 2015

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

Fast probabilistic file fingerprinting for big data.

BMC Genomics 2013 15;14 Suppl 2:S8. Epub 2013 Feb 15.

Institute of Computer Science, University of Tartu, J, Liivi 2, 50409 Tartu, Estonia.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2164-14-S2-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3582436PMC
June 2013

Genetical genomics for evolutionary studies.

Methods Mol Biol 2012 ;856:469-85

Laboratory of Nematology, Wageningen University, Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-585-5_19DOI Listing
July 2012

Scalable computing for evolutionary genomics.

Methods Mol Biol 2012 ;856:529-45

Laboratory of Nematology, Wageningen University, Wageningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/978-1-61779-585-5_22DOI Listing
July 2012

xQTL workbench: a scalable web environment for multi-level QTL analysis.

Bioinformatics 2012 Apr 3;28(7):1042-4. Epub 2012 Feb 3.

Groningen Bioinformatics Centre, University of Groningen, Groningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/bts049DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3315722PMC
April 2012

Big data, but are we ready?

Nat Rev Genet 2011 Mar 8;12(3):224. Epub 2011 Feb 8.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nrg2857-c1DOI Listing
March 2011

R/qtl: high-throughput multiple QTL mapping.

Bioinformatics 2010 Dec 21;26(23):2990-2. Epub 2010 Oct 21.

Groningen Bioinformatics Centre, University of Groningen, Groningen, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq565DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2982156PMC
December 2010

BioRuby: bioinformatics software for the Ruby programming language.

Bioinformatics 2010 Oct 25;26(20):2617-9. Epub 2010 Aug 25.

Department of Genome Informatics, Genome Information Research Center, Research Institute for Microbial Diseases, Osaka University, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btq475DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951089PMC
October 2010

Mapping determinants of gene expression plasticity by genetical genomics in C. elegans.

PLoS Genet 2006 Dec 13;2(12):e222. Epub 2006 Nov 13.

Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Haren, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.plos.org/10.1371/journal.pgen.0020222
Publisher Site
http://dx.doi.org/10.1371/journal.pgen.0020222DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1756913PMC
December 2006

Linking cDNA-AFLP-based gene expression patterns and ESTs.

Methods Mol Biol 2006 ;317:123-38

Laboratory of Microbiology-Fungal Genomics, Wageningen University and Research Center, The Netherlands.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1385/1-59259-968-0:123DOI Listing
April 2006