Publications by authors named "Pieter J DeJong"

6Publications

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.

Authors:
Jill L Wegrzyn John D Liechty Kristian A Stevens Le-Shin Wu Carol A Loopstra Hans A Vasquez-Gross William M Dougherty Brian Y Lin Jacob J Zieve Pedro J Martínez-García Carson Holt Mark Yandell Aleksey V Zimin James A Yorke Marc W Crepeau Daniela Puiu Steven L Salzberg Pieter J Dejong Keithanne Mockaitis Doreen Main Charles H Langley David B Neale

Genetics 2014 Mar;196(3):891-909

Department of Plant Sciences, University of California, Davis, California 95616.

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March 2014

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Authors:
David B Neale Jill L Wegrzyn Kristian A Stevens Aleksey V Zimin Daniela Puiu Marc W Crepeau Charis Cardeno Maxim Koriabine Ann E Holtz-Morris John D Liechty Pedro J Martínez-García Hans A Vasquez-Gross Brian Y Lin Jacob J Zieve William M Dougherty Sara Fuentes-Soriano Le-Shin Wu Don Gilbert Guillaume Marçais Michael Roberts Carson Holt Mark Yandell John M Davis Katherine E Smith Jeffrey F D Dean W Walter Lorenz Ross W Whetten Ronald Sederoff Nicholas Wheeler Patrick E McGuire Doreen Main Carol A Loopstra Keithanne Mockaitis Pieter J deJong James A Yorke Steven L Salzberg Charles H Langley

Genome Biol 2014 Mar 4;15(3):R59. Epub 2014 Mar 4.

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March 2014

Marking embryonic stem cells with a 2A self-cleaving peptide: a NKX2-5 emerald GFP BAC reporter.

Authors:
Edward C Hsiao Yuko Yoshinaga Trieu D Nguyen Stacy L Musone Judy E Kim Paul Swinton Isidro Espineda Carlota Manalac Pieter J deJong Bruce R Conklin

PLoS One 2008 Jul 2;3(7):e2532. Epub 2008 Jul 2.

Gladstone Institute of Cardiovascular Disease, San Francisco, California, United States of America.

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July 2008

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Authors:
Kerstin Lindblad-Toh Claire M Wade Tarjei S Mikkelsen Elinor K Karlsson David B Jaffe Michael Kamal Michele Clamp Jean L Chang Edward J Kulbokas Michael C Zody Evan Mauceli Xiaohui Xie Matthew Breen Robert K Wayne Elaine A Ostrander Chris P Ponting Francis Galibert Douglas R Smith Pieter J DeJong Ewen Kirkness Pablo Alvarez Tara Biagi William Brockman Jonathan Butler Chee-Wye Chin April Cook James Cuff Mark J Daly David DeCaprio Sante Gnerre Manfred Grabherr Manolis Kellis Michael Kleber Carolyne Bardeleben Leo Goodstadt Andreas Heger Christophe Hitte Lisa Kim Klaus-Peter Koepfli Heidi G Parker John P Pollinger Stephen M J Searle Nathan B Sutter Rachael Thomas Caleb Webber Jennifer Baldwin Adal Abebe Amr Abouelleil Lynne Aftuck Mostafa Ait-Zahra Tyler Aldredge Nicole Allen Peter An Scott Anderson Claudel Antoine Harindra Arachchi Ali Aslam Laura Ayotte Pasang Bachantsang Andrew Barry Tashi Bayul Mostafa Benamara Aaron Berlin Daniel Bessette Berta Blitshteyn Toby Bloom Jason Blye Leonid Boguslavskiy Claude Bonnet Boris Boukhgalter Adam Brown Patrick Cahill Nadia Calixte Jody Camarata Yama Cheshatsang Jeffrey Chu Mieke Citroen Alville Collymore Patrick Cooke Tenzin Dawoe Riza Daza Karin Decktor Stuart DeGray Norbu Dhargay Kimberly Dooley Kathleen Dooley Passang Dorje Kunsang Dorjee Lester Dorris Noah Duffey Alan Dupes Osebhajajeme Egbiremolen Richard Elong Jill Falk Abderrahim Farina Susan Faro Diallo Ferguson Patricia Ferreira Sheila Fisher Mike FitzGerald Karen Foley Chelsea Foley Alicia Franke Dennis Friedrich Diane Gage Manuel Garber Gary Gearin Georgia Giannoukos Tina Goode Audra Goyette Joseph Graham Edward Grandbois Kunsang Gyaltsen Nabil Hafez Daniel Hagopian Birhane Hagos Jennifer Hall Claire Healy Ryan Hegarty Tracey Honan Andrea Horn Nathan Houde Leanne Hughes Leigh Hunnicutt M Husby Benjamin Jester Charlien Jones Asha Kamat Ben Kanga Cristyn Kells Dmitry Khazanovich Alix Chinh Kieu Peter Kisner Mayank Kumar Krista Lance Thomas Landers Marcia Lara William Lee Jean-Pierre Leger Niall Lennon Lisa Leuper Sarah LeVine Jinlei Liu Xiaohong Liu Yeshi Lokyitsang Tashi Lokyitsang Annie Lui Jan Macdonald John Major Richard Marabella Kebede Maru Charles Matthews Susan McDonough Teena Mehta James Meldrim Alexandre Melnikov Louis Meneus Atanas Mihalev Tanya Mihova Karen Miller Rachel Mittelman Valentine Mlenga Leonidas Mulrain Glen Munson Adam Navidi Jerome Naylor Tuyen Nguyen Nga Nguyen Cindy Nguyen Thu Nguyen Robert Nicol Nyima Norbu Choe Norbu Nathaniel Novod Tenchoe Nyima Peter Olandt Barry O'Neill Keith O'Neill Sahal Osman Lucien Oyono Christopher Patti Danielle Perrin Pema Phunkhang Fritz Pierre Margaret Priest Anthony Rachupka Sujaa Raghuraman Rayale Rameau Verneda Ray Christina Raymond Filip Rege Cecil Rise Julie Rogers Peter Rogov Julie Sahalie Sampath Settipalli Theodore Sharpe Terrance Shea Mechele Sheehan Ngawang Sherpa Jianying Shi Diana Shih Jessie Sloan Cherylyn Smith Todd Sparrow John Stalker Nicole Stange-Thomann Sharon Stavropoulos Catherine Stone Sabrina Stone Sean Sykes Pierre Tchuinga Pema Tenzing Senait Tesfaye Dawa Thoulutsang Yama Thoulutsang Kerri Topham Ira Topping Tsamla Tsamla Helen Vassiliev Vijay Venkataraman Andy Vo Tsering Wangchuk Tsering Wangdi Michael Weiand Jane Wilkinson Adam Wilson Shailendra Yadav Shuli Yang Xiaoping Yang Geneva Young Qing Yu Joanne Zainoun Lisa Zembek Andrew Zimmer Eric S Lander

Nature 2005 Dec;438(7069):803-19

Broad Institute of Harvard and MIT, 320 Charles Street, Cambridge, Massachusetts 02141, USA.

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December 2005

1-Mb resolution array-based comparative genomic hybridization using a BAC clone set optimized for cancer gene analysis.

Authors:
Joel Greshock Tara L Naylor Adam Margolin Sharon Diskin Stephen H Cleaver P Andrew Futreal Pieter J deJong Shaying Zhao Michael Liebman Barbara L Weber

Genome Res 2004 Jan 12;14(1):179-87. Epub 2003 Dec 12.

Abramson Family Cancer Research Institute, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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January 2004

Biomedical applications and studies of molecular evolution: a proposal for a primate genomic library resource.

Authors:
Evan E Eichler Pieter J DeJong

Genome Res 2002 May;12(5):673-8

Department of Genetics, Case Western Reserve University School of Medicine and University Hospitals of Cleveland, Cleveland, Ohio 44106, USA.

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May 2002