Publications by authors named "Pierre-Marie Allard"

33Publications

New insights into quetiapine metabolism using molecular networking.

Sci Rep 2020 11 16;10(1):19921. Epub 2020 Nov 16.

INSERM, INRAE, CHU Rennes, Institut NuMeCan (Nutrition, Metabolism and Cancer), PREVITOX Network, Univ Rennes, 35033, Rennes, France.

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http://dx.doi.org/10.1038/s41598-020-77106-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7669884PMC
November 2020

Surface sensing triggers a broad-spectrum antimicrobial response in Pseudomonas aeruginosa.

Environ Microbiol 2020 Aug 10;22(8):3572-3587. Epub 2020 Jul 10.

Transplant Infectious Diseases Unit, University Hospital Geneva, Geneva, Switzerland.

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http://dx.doi.org/10.1111/1462-2920.15139DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7496599PMC
August 2020

A database of high-resolution MS/MS spectra for lichen metabolites.

Sci Data 2019 11 28;6(1):294. Epub 2019 Nov 28.

CNRS, BioCIS (Biomolécules: Conception Isolement et Synthèse)-UMR 8076, Univ Paris-Sud, Université Paris-Saclay, 5, rue J.-B. Clément, F-92290, Châtenay-Malabry, France.

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http://dx.doi.org/10.1038/s41597-019-0305-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6882832PMC
November 2019

Taxonomically Informed Scoring Enhances Confidence in Natural Products Annotation.

Front Plant Sci 2019 25;10:1329. Epub 2019 Oct 25.

Institute of Pharmaceutical Sciences of Western Switzerland (ISPSO), University of Geneva, Centre Médical Universitaire (CMU), Geneva, Switzerland.

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http://dx.doi.org/10.3389/fpls.2019.01329DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6824209PMC
October 2019

Discovery of Lipid Peroxidation Inhibitors from Species Prioritized through Multivariate Data Analysis and Multi-Informative Molecular Networking.

Molecules 2019 Aug 17;24(16). Epub 2019 Aug 17.

Department of Pharmaceutical Chemistry and Pharmacognosy, Faculty of Pharmaceutical Sciences and Center of Excellence for Innovation in Chemistry, Naresuan University, Phitsanulok 65000, Thailand.

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http://dx.doi.org/10.3390/molecules24162989DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6719142PMC
August 2019

Identification of chemotypes in bitter melon by metabolomics: a plant with potential benefit for management of diabetes in traditional Chinese medicine.

Metabolomics 2019 07 18;15(8):104. Epub 2019 Jul 18.

School of Pharmaceutical Sciences, EPGL, University of Geneva, University of Lausanne, CMU - Rue Michel-Servet 1, CH-1206, Geneva 4, Switzerland.

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http://dx.doi.org/10.1007/s11306-019-1565-7DOI Listing
July 2019

Correction to: A case of fatal acebutolol poisoning: an illustration of the potential of molecular networking.

Int J Legal Med 2020 01;134(1):257-258

INSERM, INRA, CHU Rennes, Institut NuMeCan (Nutrition, Metabolism and Cancer), University Rennes, 35000, Rennes, France.

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http://dx.doi.org/10.1007/s00414-019-02073-6DOI Listing
January 2020

A case of fatal acebutolol poisoning: an illustration of the potential of molecular networking.

Int J Legal Med 2020 Jan 17;134(1):251-256. Epub 2019 Apr 17.

INSERM, INRA, CHU Rennes, Institut NuMeCan (Nutrition, Metabolism and Cancer), University Rennes, 35000, Rennes, France.

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http://link.springer.com/10.1007/s00414-019-02062-9
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http://dx.doi.org/10.1007/s00414-019-02062-9DOI Listing
January 2020

Characterization, Diversity, and Structure-Activity Relationship Study of Lipoamino Acids from sp. and Synthetic Analogues.

Int J Mol Sci 2019 Mar 2;20(5). Epub 2019 Mar 2.

CNRS, Institut de Chimie des Substances Naturelles, UPR 2301, Université Paris-Saclay, 1 avenue de la Terrasse, 91198 Gif-sur-Yvette, France.

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http://dx.doi.org/10.3390/ijms20051083DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6429151PMC
March 2019

Application of a molecular networking approach for clinical and forensic toxicology exemplified in three cases involving 3-MeO-PCP, doxylamine, and chlormequat.

Drug Test Anal 2019 May 8;11(5):669-677. Epub 2019 Jan 8.

Laboratory of Forensic and Clinical Toxicology, University Hospital of Rennes, Rennes, France.

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http://doi.wiley.com/10.1002/dta.2550
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http://dx.doi.org/10.1002/dta.2550DOI Listing
May 2019

Lung Cancer Chemopreventive Activity of Patulin Isolated from Penicillium vulpinum.

Molecules 2018 Mar 12;23(3). Epub 2018 Mar 12.

School of Pharmaceutical Sciences, University of Geneva, University of Lausanne, 1 Rue Michel-Servet, CH-1211 Geneva 4, Switzerland.

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http://www.mdpi.com/1420-3049/23/3/636
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http://dx.doi.org/10.3390/molecules23030636DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6017800PMC
March 2018

Pharmacognosy in the digital era: shifting to contextualized metabolomics.

Curr Opin Biotechnol 2018 12 27;54:57-64. Epub 2018 Feb 27.

School of Pharmaceutical Sciences, University of Geneva, University of Lausanne, Rue Michel-Servet 1, CH-1211 Geneva 4, Switzerland.

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https://linkinghub.elsevier.com/retrieve/pii/S09581669173025
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http://dx.doi.org/10.1016/j.copbio.2018.02.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6110999PMC
December 2018

Dynamics of Metabolite Induction in Fungal Co-cultures by Metabolomics at Both Volatile and Non-volatile Levels.

Front Microbiol 2018 5;9:72. Epub 2018 Feb 5.

School of Pharmaceutical Sciences (EPGL), University of Geneva, University of Lausanne, Centre Médical Universitaire (CMU), Geneva, Switzerland.

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http://dx.doi.org/10.3389/fmicb.2018.00072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5807337PMC
February 2018

Targeted Isolation of Monoterpene Indole Alkaloids from Palicourea sessilis.

J Nat Prod 2017 11 9;80(11):3032-3037. Epub 2017 Nov 9.

Laboratory of Pharmacognosy and Quality Control of Phytomedicines, Faculty of Pharmacy, Universidade Federal do Rio Grande do Sul-UFRGS , 90610-000, Porto Alegre/RS, Brazil.

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http://pubs.acs.org/doi/10.1021/acs.jnatprod.7b00681
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http://dx.doi.org/10.1021/acs.jnatprod.7b00681DOI Listing
November 2017

Cytotoxic Prenylated Stilbenes Isolated from Macaranga tanarius.

J Nat Prod 2017 10 3;80(10):2684-2691. Epub 2017 Oct 3.

Institut de Chimie des Substances Naturelles, CNRS, ICSN UPR2301, University of Paris-Saclay , 91198, Gif-sur-Yvette, France.

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http://dx.doi.org/10.1021/acs.jnatprod.7b00409DOI Listing
October 2017

Deep metabolome annotation in natural products research: towards a virtuous cycle in metabolite identification.

Curr Opin Chem Biol 2017 02 12;36:40-49. Epub 2017 Jan 12.

School of Pharmaceutical Sciences, University of Geneva, University of Lausanne, CMU-Rue Michel Servet 1, 1211 Geneva 11, Switzerland. Electronic address:

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http://dx.doi.org/10.1016/j.cbpa.2016.12.022DOI Listing
February 2017

UHPLC-MS-based HDAC Assay Applied to Bio-guided Microfractionation of Fungal Extracts.

Phytochem Anal 2017 Mar 5;28(2):93-100. Epub 2016 Dec 5.

School of Pharmaceutical Sciences, University of Geneva, University of Lausanne, CMU - Rue Michel Servet 1, 1211, Geneva, 11, Switzerland.

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http://dx.doi.org/10.1002/pca.2652DOI Listing
March 2017

Targeted Isolation of Indolopyridoquinazoline Alkaloids from Conchocarpus fontanesianus Based on Molecular Networks.

J Nat Prod 2016 09 24;79(9):2270-8. Epub 2016 Aug 24.

School of Pharmaceutical Sciences, EPGL, University of Geneva, University of Lausanne , 30 quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1021/acs.jnatprod.6b00379DOI Listing
September 2016

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Authors:
Mingxun Wang Jeremy J Carver Vanessa V Phelan Laura M Sanchez Neha Garg Yao Peng Don Duy Nguyen Jeramie Watrous Clifford A Kapono Tal Luzzatto-Knaan Carla Porto Amina Bouslimani Alexey V Melnik Michael J Meehan Wei-Ting Liu Max Crüsemann Paul D Boudreau Eduardo Esquenazi Mario Sandoval-Calderón Roland D Kersten Laura A Pace Robert A Quinn Katherine R Duncan Cheng-Chih Hsu Dimitrios J Floros Ronnie G Gavilan Karin Kleigrewe Trent Northen Rachel J Dutton Delphine Parrot Erin E Carlson Bertrand Aigle Charlotte F Michelsen Lars Jelsbak Christian Sohlenkamp Pavel Pevzner Anna Edlund Jeffrey McLean Jörn Piel Brian T Murphy Lena Gerwick Chih-Chuang Liaw Yu-Liang Yang Hans-Ulrich Humpf Maria Maansson Robert A Keyzers Amy C Sims Andrew R Johnson Ashley M Sidebottom Brian E Sedio Andreas Klitgaard Charles B Larson Cristopher A Boya P Daniel Torres-Mendoza David J Gonzalez Denise B Silva Lucas M Marques Daniel P Demarque Egle Pociute Ellis C O'Neill Enora Briand Eric J N Helfrich Eve A Granatosky Evgenia Glukhov Florian Ryffel Hailey Houson Hosein Mohimani Jenan J Kharbush Yi Zeng Julia A Vorholt Kenji L Kurita Pep Charusanti Kerry L McPhail Kristian Fog Nielsen Lisa Vuong Maryam Elfeki Matthew F Traxler Niclas Engene Nobuhiro Koyama Oliver B Vining Ralph Baric Ricardo R Silva Samantha J Mascuch Sophie Tomasi Stefan Jenkins Venkat Macherla Thomas Hoffman Vinayak Agarwal Philip G Williams Jingqui Dai Ram Neupane Joshua Gurr Andrés M C Rodríguez Anne Lamsa Chen Zhang Kathleen Dorrestein Brendan M Duggan Jehad Almaliti Pierre-Marie Allard Prasad Phapale Louis-Felix Nothias Theodore Alexandrov Marc Litaudon Jean-Luc Wolfender Jennifer E Kyle Thomas O Metz Tyler Peryea Dac-Trung Nguyen Danielle VanLeer Paul Shinn Ajit Jadhav Rolf Müller Katrina M Waters Wenyuan Shi Xueting Liu Lixin Zhang Rob Knight Paul R Jensen Bernhard O Palsson Kit Pogliano Roger G Linington Marcelino Gutiérrez Norberto P Lopes William H Gerwick Bradley S Moore Pieter C Dorrestein Nuno Bandeira

Nat Biotechnol 2016 08;34(8):828-837

Center for Computational Mass Spectrometry, UC San Diego, La Jolla, United States.

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http://dx.doi.org/10.1038/nbt.3597DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5321674PMC
August 2016

Integration of Molecular Networking and In-Silico MS/MS Fragmentation for Natural Products Dereplication.

Anal Chem 2016 Mar 1;88(6):3317-23. Epub 2016 Mar 1.

School of Pharmaceutical Sciences, EPGL, University of Geneva, University of Lausanne , Quai Ernest-Ansermet 30, CH-1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1021/acs.analchem.5b04804DOI Listing
March 2016

Anti-Candida Cassane-Type Diterpenoids from the Root Bark of Swartzia simplex.

J Nat Prod 2015 Dec 11;78(12):2994-3004. Epub 2015 Dec 11.

School of Pharmaceutical Sciences, EPGL, University of Geneva, University of Lausanne , 30 quai Ernest-Ansermet, CH-1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1021/acs.jnatprod.5b00744DOI Listing
December 2015

Thinking big about small beings--the (yet) underdeveloped microbial natural products chemistry in Brazil.

Nat Prod Rep 2014 May 2;31(5):646-75. Epub 2014 Apr 2.

Instituto de Química de São Carlos, Universidade de São Paulo, CP 780, CEP 13560-970, São Carlos, SP, Brasil.

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http://dx.doi.org/10.1039/c3np70112cDOI Listing
May 2014

Antiviral chlorinated daphnane diterpenoid orthoesters from the bark and wood of Trigonostemon cherrieri.

Phytochemistry 2012 Dec 29;84:160-8. Epub 2012 Aug 29.

Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, LabEx LERMIT, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex, France.

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http://dx.doi.org/10.1016/j.phytochem.2012.07.023DOI Listing
December 2012

Trigocherrin A, the first natural chlorinated daphnane diterpene orthoester from Trigonostemon cherrieri.

Org Lett 2012 Jan 19;14(1):342-5. Epub 2011 Dec 19.

Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, 1, Avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex, France.

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http://dx.doi.org/10.1021/ol2030907DOI Listing
January 2012

Alkylated flavanones from the bark of Cryptocarya chartacea as dengue virus NS5 polymerase inhibitors.

J Nat Prod 2011 Nov 3;74(11):2446-53. Epub 2011 Nov 3.

Centre de Recherche de Gif, Institut de Chimie des Substances Naturelles, CNRS, 1 Avenue de la Terrasse, 91198 Gif-sur-Yvette Cedex, France.

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http://pubs.acs.org/doi/abs/10.1021/np200715v
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http://dx.doi.org/10.1021/np200715vDOI Listing
November 2011