Publications by authors named "Pierre Peyret"

65Publications

Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems.

Authors:
Clémence Defois Jérémy Ratel Ghislain Garrait Sylvain Denis Olivier Le Goff Jérémie Talvas Pascale Mosoni Erwan Engel Pierre Peyret

Sci Rep 2018 Jul 20;8(1):11006. Epub 2018 Jul 20.

MEDIS, Université Clermont Auvergne, INRA, Clermont-Ferrand, France.

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July 2018

Comparing 16S rDNA amplicon sequencing and hybridization capture for pea aphid microbiota diversity analysis.

Authors:
Marie Cariou Céline Ribière Stéphanie Morlière Jean-Pierre Gauthier Jean-Christophe Simon Pierre Peyret Sylvain Charlat

BMC Res Notes 2018 Jul 11;11(1):461. Epub 2018 Jul 11.

Laboratoire de Biométrie et Biologie Evolutive, CNRS, UMR 5558, Université de Lyon, Université Lyon 1, 43 Boulevard du 11 novembre 1918, 69622, Villeurbanne, France.

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July 2018

ASaiM: a Galaxy-based framework to analyze microbiota data.

Authors:
Bérénice Batut Kévin Gravouil Clémence Defois Saskia Hiltemann Jean-François Brugère Eric Peyretaillade Pierre Peyret

Gigascience 2018 06;7(6)

Université Clermont Auvergne, EA 4678 CIDAM, 63000 Clermont-Ferrand, France (previous address).

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June 2018

Chloromethane formation and degradation in the fern phyllosphere.

Authors:
Nicole Jaeger Ludovic Besaury Amelie Ninja Röhling Fabien Koch Anne-Marie Delort Cyrielle Gasc Markus Greule Steffen Kolb Thierry Nadalig Pierre Peyret Stéphane Vuilleumier Pierre Amato Françoise Bringel Frank Keppler

Sci Total Environ 2018 Sep 18;634:1278-1287. Epub 2018 Apr 18.

Institute of Earth Sciences, Heidelberg University, Im Neuenheimer Feld 236, Heidelberg, Germany; Heidelberg Center for the Environment HCE, Heidelberg University, Heidelberg, Germany. Electronic address:

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September 2018

Hybridization capture reveals microbial diversity missed using current profiling methods.

Authors:
Cyrielle Gasc Pierre Peyret

Microbiome 2018 03 27;6(1):61. Epub 2018 Mar 27.

Université Clermont Auvergne, INRA, UMR 454 MEDIS, 28, place Henri Dunant, F-63000, Clermont-Ferrand, France.

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March 2018

FibroChip, a Functional DNA Microarray to Monitor Cellulolytic and Hemicellulolytic Activities of Rumen Microbiota.

Authors:
Sophie Comtet-Marre Frédérique Chaucheyras-Durand Ourdia Bouzid Pascale Mosoni Ali R Bayat Pierre Peyret Evelyne Forano

Front Microbiol 2018 13;9:215. Epub 2018 Feb 13.

UMR 454 MEDIS, INRA, Université Clermont Auvergne, Clermont-Ferrand, France.

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February 2018

PtxtPME1 and homogalacturonans influence xylem hydraulic properties in poplar.

Authors:
Thierry Allario Aude Tixier Hosam Awad Cedric Lemaire Nicole Brunel Eric Badel Têtè S Barigah Jean-Louis Julien Pierre Peyret Ewa J Mellerowicz Herve Cochard Stephane Herbette

Physiol Plant 2018 Aug 23;163(4):502-515. Epub 2018 Apr 23.

UCA, INRA, PIAF, 63000, Clermont-Ferrand, France.

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August 2018

Environmental Pollutant Benzo[]Pyrene Impacts the Volatile Metabolome and Transcriptome of the Human Gut Microbiota.

Authors:
Clémence Defois Jérémy Ratel Sylvain Denis Bérénice Batut Réjane Beugnot Eric Peyretaillade Erwan Engel Pierre Peyret

Front Microbiol 2017 15;8:1562. Epub 2017 Aug 15.

MEDIS, Institut National de la Recherche Agronomique, Université Clermont AuvergneClermont-Ferrand, France.

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August 2017

OCaPPI-Db: an oligonucleotide probe database for pathogen identification through hybridization capture.

Authors:
Cyrielle Gasc Antony Constantin Faouzi Jaziri Pierre Peyret

Database (Oxford) 2017 01;2017(1)

Université Clermont Auvergne, INRA, MEDIS, F-63000 Clermont-Ferrand, France.

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January 2017

Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes.

Authors:
Abdel Belkorchia Jean-François Pombert Valérie Polonais Nicolas Parisot Frédéric Delbac Jean-François Brugère Pierre Peyret Christine Gaspin Eric Peyretaillade

DNA Res 2017 Jun;24(3):251-260

Université Clermont Auvergne, EA 4678 CIDAM, BP 10448, F-63001 Clermont-Ferrand, France.

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June 2017

Revealing large metagenomic regions through long DNA fragment hybridization capture.

Authors:
Cyrielle Gasc Pierre Peyret

Microbiome 2017 03 14;5(1):33. Epub 2017 Mar 14.

Université Clermont Auvergne, INRA, MEDIS, 63000, Clermont-Ferrand, France.

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March 2017

Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet.

Authors:
Sophie Comtet-Marre Nicolas Parisot Pascale Lepercq Frédérique Chaucheyras-Durand Pascale Mosoni Eric Peyretaillade Ali R Bayat Kevin J Shingfield Pierre Peyret Evelyne Forano

Front Microbiol 2017 31;8:67. Epub 2017 Jan 31.

UR454 Unité de Microbiologie, INRA Saint-Genès-Champanelle, France.

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January 2017

The sequence capture by hybridization: a new approach for revealing the potential of mono-aromatic hydrocarbons bioattenuation in a deep oligotrophic aquifer.

Authors:
Magali Ranchou-Peyruse Cyrielle Gasc Marion Guignard Thomas Aüllo David Dequidt Pierre Peyret Anthony Ranchou-Peyruse

Microb Biotechnol 2017 03 21;10(2):469-479. Epub 2016 Oct 21.

Université de Pau et des Pays de l'Adour, Equipe Environnement et Microbiologie, IPREM-CNRS 5254, F-64013, Pau, France.

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March 2017

Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model.

Authors:
Céline Ribière Pierre Peyret Nicolas Parisot Claude Darcha Pierre J Déchelotte Nicolas Barnich Eric Peyretaillade Delphine Boucher

Sci Rep 2016 08 9;6:31027. Epub 2016 Aug 9.

Clermont Université, Université d'Auvergne, EA 4678 CIDAM, F-63001 Clermont-Ferrand, France.

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August 2016

Sequence capture by hybridization to explore modern and ancient genomic diversity in model and nonmodel organisms.

Authors:
Cyrielle Gasc Eric Peyretaillade Pierre Peyret

Nucleic Acids Res 2016 Jun 21;44(10):4504-18. Epub 2016 Apr 21.

EA 4678 CIDAM, Université d'Auvergne, Clermont-Ferrand, 63001, France

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June 2016

Genome Sequence of Pseudomonas sp. HUK17, Isolated from Hexachlorocyclohexane-Contaminated Soil.

Authors:
Cyrielle Gasc Jean-Yves Richard Pierre Peyret

Genome Announc 2016 Apr 14;4(2). Epub 2016 Apr 14.

EA 4678 CIDAM, Université d'Auvergne, Clermont-Ferrand, France

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April 2016

Genome Sequence of Staphylococcus aureus Strain HUK16, Isolated from Hexachlorocyclohexane-Contaminated Soil.

Authors:
Cyrielle Gasc Jean-Yves Richard Pierre Peyret

Genome Announc 2016 Apr 14;4(2). Epub 2016 Apr 14.

EA 4678 CIDAM, Université d'Auvergne, Clermont-Ferrand, France

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April 2016

Genome Sequence of Bacillus subtilis Strain HUK15, Isolated from Hexachlorocyclohexane-Contaminated Soil.

Authors:
Cyrielle Gasc Jean-Yves Richard Pierre Peyret

Genome Announc 2016 Apr 14;4(2). Epub 2016 Apr 14.

EA 4678 CIDAM, Université d'Auvergne, Clermont-Ferrand, France

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April 2016

Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning.

Authors:
Céline Ribière Réjane Beugnot Nicolas Parisot Cyrielle Gasc Clémence Defois Jérémie Denonfoux Delphine Boucher Eric Peyretaillade Pierre Peyret

Methods Mol Biol 2016 ;1399:167-82

EA 4678, CIDAM, Clermont Université, Université d'Auvergne, 28 place Henri Dunant, 63001, Clermont-Ferrand, France.

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October 2016

Distribution of Dehalococcoidia in the Anaerobic Deep Water of a Remote Meromictic Crater Lake and Detection of Dehalococcoidia-Derived Reductive Dehalogenase Homologous Genes.

Authors:
Corinne Biderre-Petit Eric Dugat-Bony Mickaël Mege Nicolas Parisot Lorenz Adrian Anne Moné Jérémie Denonfoux Eric Peyretaillade Didier Debroas Delphine Boucher Pierre Peyret

PLoS One 2016 6;11(1):e0145558. Epub 2016 Jan 6.

Clermont Université, Université d'Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France.

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July 2016

Probe Design Strategies for Oligonucleotide Microarrays.

Authors:
Nicolas Parisot Eric Peyretaillade Eric Dugat-Bony Jérémie Denonfoux Antoine Mahul Pierre Peyret

Methods Mol Biol 2016 ;1368:67-82

Université d'Auvergne, EA 4678, CIDAM, Clermont Université, BP 10448, F-63000, Clermont-Ferrand, France.

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September 2016

The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes.

Authors:
Abdel Belkorchia Cyrielle Gasc Valérie Polonais Nicolas Parisot Nicolas Gallois Céline Ribière Emmanuelle Lerat Christine Gaspin Jean-François Pombert Pierre Peyret Eric Peyretaillade

PLoS One 2015 30;10(9):e0139075. Epub 2015 Sep 30.

Clermont Université, Université d'Auvergne, EA 4678 CIDAM, BP 10448, F-63001, Clermont-Ferrand, France.

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June 2016

Capturing prokaryotic dark matter genomes.

Authors:
Cyrielle Gasc Céline Ribière Nicolas Parisot Réjane Beugnot Clémence Defois Corinne Petit-Biderre Delphine Boucher Eric Peyretaillade Pierre Peyret

Res Microbiol 2015 Dec 20;166(10):814-30. Epub 2015 Jun 20.

Clermont Université, Université d'Auvergne, EA 4678 CIDAM, BP 10448, F-63001 Clermont-Ferrand, France. Electronic address:

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December 2015

Corrigendum to "unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette".

Authors:
Guillaume Borrel Nadia Gaci Pierre Peyret Paul W O'Toole Simonetta Gribaldo Jean-François Brugère

Archaea 2015 2;2015:941836. Epub 2015 Feb 2.

EA-4678 CIDAM, Clermont Université, Université d'Auvergne, Place Henri Dunant, 63001 Clermont-Ferrand, France.

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May 2015

Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils.

Authors:
Aurélie Cébron Thierry Beguiristain Jeanne Bongoua-Devisme Jérémie Denonfoux Pierre Faure Catherine Lorgeoux Stéphanie Ouvrard Nicolas Parisot Pierre Peyret Corinne Leyval

Environ Sci Pollut Res Int 2015 Sep 25;22(18):13724-38. Epub 2015 Jan 25.

CNRS, LIEC UMR 7360, Faculté des Sciences et Technologies, BP 70239, 54506, Vandoeuvre-lès-Nancy Cedex, France,

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September 2015

Solution hybrid selection capture for the recovery of functional full-length eukaryotic cDNAs from complex environmental samples.

Authors:
Claudia Bragalini Céline Ribière Nicolas Parisot Laurent Vallon Elsa Prudent Eric Peyretaillade Mariangela Girlanda Pierre Peyret Roland Marmeisse Patricia Luis

DNA Res 2014 Dec 3;21(6):685-94. Epub 2014 Oct 3.

Ecologie Microbienne, UMR CNRS 5557, USC INRA 1364, Université de Lyon, Université Lyon 1, Villeurbanne 69622, France

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December 2014

Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans.

Authors:
Nicolas Parisot Adrian Pelin Cyrielle Gasc Valérie Polonais Abdel Belkorchia Johan Panek Hicham El Alaoui David G Biron Emilie Brasset Chantal Vaury Pierre Peyret Nicolas Corradi Éric Peyretaillade Emmanuelle Lerat

Genome Biol Evol 2014 Aug 28;6(9):2289-300. Epub 2014 Aug 28.

Université de Lyon; Université Lyon 1; CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Évolutive, F-69622 Villeurbanne, France

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August 2014

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Authors:
Guillaume Borrel Nicolas Parisot Hugh M B Harris Eric Peyretaillade Nadia Gaci William Tottey Olivier Bardot Kasie Raymann Simonetta Gribaldo Pierre Peyret Paul W O'Toole Jean-François Brugère

BMC Genomics 2014 Aug 13;15:679. Epub 2014 Aug 13.

EA-4678 CIDAM, Clermont Université, Université d'Auvergne, 28 Place Henri Dunant, BP 10448, 63000 Clermont-Ferrand, France.

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August 2014

Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France.

Authors:
Guillaume Girault Nicolas Parisot Eric Peyretaillade Pierre Peyret Sylviane Derzelle

Genome Announc 2014 Jul 31;2(4). Epub 2014 Jul 31.

University Paris-Est, ANSES, Animal Health Laboratory, Bacterial Zoonoses Unit, Maisons-Alfort, France

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July 2014

Hijacking of host cellular functions by an intracellular parasite, the microsporidian Anncaliia algerae.

Authors:
Johan Panek Hicham El Alaoui Anne Mone Serge Urbach Edith Demettre Catherine Texier Christine Brun Andreas Zanzoni Eric Peyretaillade Nicolas Parisot Emmanuelle Lerat Pierre Peyret Frederic Delbac David G Biron

PLoS One 2014 26;9(6):e100791. Epub 2014 Jun 26.

Clermont Université, Université Blaise Pascal, Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France; CNRS, UMR 6023, LMGE, Aubière, France.

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February 2015

PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification.

Authors:
Faouzi Jaziri Nicolas Parisot Anis Abid Jérémie Denonfoux Céline Ribière Cyrielle Gasc Delphine Boucher Jean-François Brugère Antoine Mahul David R C Hill Eric Peyretaillade Pierre Peyret

Database (Oxford) 2014 26;2014(0):bau036. Epub 2014 Apr 26.

Clermont Université, Université d'Auvergne, EA 4678 CIDAM, BP 10448, F-63001 Clermont-Ferrand, France, UMR CNRS 6158, ISIMA/LIMOS, Clermont Université, Université Blaise Pascal, F-63173 Aubière, France, CNRS, UMR 6023, LMGE, F-63171 Aubière, France and Clermont Université, CRRI, F-63177 Aubière, France.

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October 2014

Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette.

Authors:
Guillaume Borrel Nadia Gaci Pierre Peyret Paul W O'Toole Simonetta Gribaldo Jean-François Brugère

Archaea 2014 27;2014:374146. Epub 2014 Jan 27.

1EA-4678 CIDAM, Clermont Université, Université d'Auvergne, Place Henri Dunant, 63001 Clermont-Ferrand, France.

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November 2014

Large scale explorative oligonucleotide probe selection for thousands of genetic groups on a computing grid: application to phylogenetic probe design using a curated small subunit ribosomal RNA gene database.

Authors:
Faouzi Jaziri Eric Peyretaillade Mohieddine Missaoui Nicolas Parisot Sébastien Cipière Jérémie Denonfoux Antoine Mahul Pierre Peyret David R C Hill

ScientificWorldJournal 2014 6;2014:350487. Epub 2014 Jan 6.

UMR CNRS 6158, ISIMA/LIMOS, Clermont Université et Université Blaise Pascal, F63173 Aubière, France.

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December 2014

Three-stage continuous culture system with a self-generated anaerobia to study the regionalized metabolism of the human gut microbiota.

Authors:
David Feria-Gervasio William Tottey Nadia Gaci Monique Alric Jean-Michel Cardot Pierre Peyret Jean-François Martin Estelle Pujos Jean-Louis Sébédio Jean-François Brugère

J Microbiol Methods 2014 Jan 11;96:111-8. Epub 2013 Dec 11.

EA 4678 CIDAM, Clermont-Université, Université d'Auvergne, BP 10448, F-63000 Clermont-Ferrand, France. Electronic address:

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January 2014

Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments.

Authors:
Frédéric Plewniak Sandrine Koechler Benjamin Navet Eric Dugat-Bony Olivier Bouchez Pierre Peyret Fabienne Séby Fabienne Battaglia-Brunet Philippe N Bertin

Mol Ecol 2013 Oct 3;22(19):4870-83. Epub 2013 Sep 3.

Département Microorganismes, Génomes, Environnement, Génétique Moléculaire, Génomique et Microbiologie, UMR7156 Université de Strasbourg/CNRS, 28 rue Goethe, 67083, Strasbourg Cedex, France.

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October 2013

Phylogenomic data support a seventh order of Methylotrophic methanogens and provide insights into the evolution of Methanogenesis.

Authors:
Guillaume Borrel Paul W O'Toole Hugh M B Harris Pierre Peyret Jean-François Brugère Simonetta Gribaldo

Genome Biol Evol 2013 ;5(10):1769-80

EA-4678 CIDAM, Clermont Université, Université d'Auvergne, Clermont-Ferrand, France.

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May 2014

Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces.

Authors:
Guillaume Borrel Hugh M B Harris Nicolas Parisot Nadia Gaci William Tottey Agnès Mihajlovski Jennifer Deane Simonetta Gribaldo Olivier Bardot Eric Peyretaillade Pierre Peyret Paul W O'Toole Jean-François Brugère

Genome Announc 2013 Jul 11;1(4). Epub 2013 Jul 11.

EA-4678 CIDAM, Conception Ingénierie et Développement de l'Aliment et du Médicament, Clermont Université, Université d'Auvergne, Clermont-Ferrand, France.

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July 2013

Wood ash amendment to biogas reactors as an alternative to landfilling? A preliminary study on changes in process chemistry and biology.

Authors:
Sabine M Podmirseg Martin S A Seewald Brigitte A Knapp Ourdia Bouzid Corinne Biderre-Petit Pierre Peyret Heribert Insam

Waste Manag Res 2013 Aug 5;31(8):829-42. Epub 2013 Jul 5.

University of Innsbruck, Institute of Microbiology, Innsbruck, Austria.

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August 2013

Identification of two new polar tube proteins related to polar tube protein 2 in the microsporidian Antonospora locustae.

Authors:
Valérie Polonais Abdel Belkorchia Michaël Roussel Eric Peyretaillade Pierre Peyret Marie Diogon Frédéric Delbac

FEMS Microbiol Lett 2013 Sep 17;346(1):36-44. Epub 2013 Jul 17.

Clermont Université, Université d'Auvergne, Laboratoire Microorganismes: Génome et Environnement, Clermont-ferrand, France.

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September 2013

The human gut chip "HuGChip", an explorative phylogenetic microarray for determining gut microbiome diversity at family level.

Authors:
William Tottey Jeremie Denonfoux Faouzi Jaziri Nicolas Parisot Mohiedine Missaoui David Hill Guillaume Borrel Eric Peyretaillade Monique Alric Hugh M B Harris Ian B Jeffery Marcus J Claesson Paul W O'Toole Pierre Peyret Jean-François Brugère

PLoS One 2013 17;8(5):e62544. Epub 2013 May 17.

EA CIDAM 4678, Clermont-Université, Université d'Auvergne, Clermont-Ferrand, France.

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December 2013

Gene capture coupled to high-throughput sequencing as a strategy for targeted metagenome exploration.

Authors:
Jérémie Denonfoux Nicolas Parisot Eric Dugat-Bony Corinne Biderre-Petit Delphine Boucher Diego P Morgavi Denis Le Paslier Eric Peyretaillade Pierre Peyret

DNA Res 2013 Apr 30;20(2):185-96. Epub 2013 Jan 30.

Centre de Recherche en Nutrition Humaine Auvergne, Clermont Université, Université d'Auvergne, EA 4678, Conception, Ingénierie et Développement de l'Aliment et du Médicament, BP 10448, Clermont-Ferrand 63000, France.

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April 2013

NucBase, an easy to use read mapper for small RNAs.

Authors:
Jeremy Dufourt Pierre Pouchin Pierre Peyret Emilie Brasset Chantal Vaury

Mob DNA 2013 Jan 1;4(1). Epub 2013 Jan 1.

Clermont Université, Université d'Auvergne, Laboratoire GReD, BP 38, F-63001 Clermont-Ferrand, France.

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January 2013

Genome sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens.

Authors:
Guillaume Borrel Hugh M B Harris William Tottey Agnès Mihajlovski Nicolas Parisot Eric Peyretaillade Pierre Peyret Simonetta Gribaldo Paul W O'Toole Jean-François Brugère

J Bacteriol 2012 Dec;194(24):6944-5

EA-4678 CIDAM, Conception Ingénierie et Développement de l'Aliment et du Médicament, Clermont Université, Université d'Auvergne, Clermont-Ferrand, France.

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December 2012

Annotation of microsporidian genomes using transcriptional signals.

Authors:
Eric Peyretaillade Nicolas Parisot Valérie Polonais Sébastien Terrat Jérémie Denonfoux Eric Dugat-Bony Ivan Wawrzyniak Corinne Biderre-Petit Antoine Mahul Sébastien Rimour Olivier Gonçalves Stéphanie Bornes Frédéric Delbac Brigitte Chebance Simone Duprat Gaëlle Samson Michael Katinka Jean Weissenbach Patrick Wincker Pierre Peyret

Nat Commun 2012 ;3:1137

Clermont Université, Université d'Auvergne, Centre de Recherche en Nutrition Humaine Auvergne, EA 4678, Conception, Ingénierie et Développement de l'Aliment et du Médicament, BP 10448, F63000 Clermont-Ferrand, France.

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March 2013

KASpOD--a web service for highly specific and explorative oligonucleotide design.

Authors:
Nicolas Parisot Jérémie Denonfoux Eric Dugat-Bony Pierre Peyret Eric Peyretaillade

Bioinformatics 2012 Dec 9;28(23):3161-2. Epub 2012 Oct 9.

Clermont Université, Université d'Auvergne, EA 4678 CIDAM, BP 10448, France.

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December 2012

In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes.

Authors:
Eric Dugat-Bony Corinne Biderre-Petit Faouzi Jaziri Maude M David Jérémie Denonfoux Delina Y Lyon Jean-Yves Richard Cyrille Curvers Delphine Boucher Timothy M Vogel Eric Peyretaillade Pierre Peyret

Microb Biotechnol 2012 Sep 21;5(5):642-53. Epub 2012 Mar 21.

Clermont Université, Université Blaise Pascal, Laboratoire Microorganismes: Génome et Environnement, BP 10448, F63000, Clermont-Ferrand, France.

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September 2012

Detecting unknown sequences with DNA microarrays: explorative probe design strategies.

Authors:
Eric Dugat-Bony Eric Peyretaillade Nicolas Parisot Corinne Biderre-Petit Faouzi Jaziri David Hill Sébastien Rimour Pierre Peyret

Environ Microbiol 2012 Feb 5;14(2):356-71. Epub 2011 Sep 5.

Clermont Université, Université Blaise Pascal, Laboratoire Microorganismes: Génome et Environnement, Clermont-Ferrand, France.

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February 2012

Production and consumption of methane in freshwater lake ecosystems.

Authors:
Guillaume Borrel Didier Jézéquel Corinne Biderre-Petit Nicole Morel-Desrosiers Jean-Pierre Morel Pierre Peyret Gérard Fonty Anne-Catherine Lehours

Res Microbiol 2011 Nov 13;162(9):832-47. Epub 2011 Jun 13.

Clermont Université, Universite Blaise Pascal, Laboratoire Microorganismes: Génome et Environnement, BP 10448, UMR CNRS 6023, 63000 Clermont-Ferrand, France.

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November 2011

Bacterial community composition of biological degreasing systems and health risk assessment for workers.

Authors:
Delphine Boucher Jean Baptiste Laffaire Faouzi Jaziri Christine David Corinne Biderre-Petit Philippe Duquenne Eric Peyretaillade Pierre Peyret

Microb Ecol 2011 Nov 23;62(4):868-81. Epub 2011 Jun 23.

Clermont Université, Université d'Auvergne, Laboratoire: Microorganismes Génome et Environnement (LMGE), BP 10448, F-63000 Clermont-Ferrand, France.

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November 2011

Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake.

Authors:
Corinne Biderre-Petit Didier Jézéquel Eric Dugat-Bony Filipa Lopes Jan Kuever Guillaume Borrel Eirc Viollier Gerard Fonty Pierre Peyret

FEMS Microbiol Ecol 2011 Sep 20;77(3):533-45. Epub 2011 Jun 20.

Laboratoire Microorganismes: Génome et Environnement, Clermont Université, Université Blaise Pascal, BP 10448, Clermont-Ferrand, France.

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September 2011

Extreme reduction and compaction of microsporidian genomes.

Authors:
Eric Peyretaillade Hicham El Alaoui Marie Diogon Valérie Polonais Nicolas Parisot David G Biron Pierre Peyret Frédéric Delbac

Res Microbiol 2011 Jul-Aug;162(6):598-606. Epub 2011 Mar 21.

Clermont Université, Université d'Auvergne, Laboratoire Microorganismes Génome et Environnement, BP 10448, F-63000 Clermont-Ferrand, France.

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December 2011

HiSpOD: probe design for functional DNA microarrays.

Authors:
Eric Dugat-Bony Mohieddine Missaoui Eric Peyretaillade Corinne Biderre-Petit Ourdia Bouzid Christophe Gouinaud David Hill Pierre Peyret

Bioinformatics 2011 Mar 6;27(5):641-8. Epub 2011 Jan 6.

Clermont Université, Université Blaise Pascal, Laboratoire Microorganismes: Génome et Environnement, BP 10448, Clermont-Ferrand, France.

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March 2011

Identification of sulfur-cycle prokaryotes in a low-sulfate lake (Lake Pavin) using aprA and 16S rRNA gene markers.

Authors:
Corinne Biderre-Petit Delphine Boucher Jan Kuever Patrick Alberic Didier Jézéquel Brigitte Chebance Guillaume Borrel Gérard Fonty Pierre Peyret

Microb Ecol 2011 Feb 25;61(2):313-27. Epub 2010 Nov 25.

Laboratoire Microorganismes, Génome et Environnement, Clermont Université, Université Blaise Pascal, BP 10448, F63000 Clermont-Ferrand, France.

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February 2011

Bacterial community changes during bioremediation of aliphatic hydrocarbon-contaminated soil.

Authors:
Cécile Militon Delphine Boucher Cédric Vachelard Geoffrey Perchet Vincent Barra Julien Troquet Eric Peyretaillade Pierre Peyret

FEMS Microbiol Ecol 2010 Dec 2;74(3):669-81. Epub 2010 Nov 2.

Clermont Université, Université d'Auvergne, Laboratoire: Microorganismes Génome et Environnement, Clermont-Ferrand, France.

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December 2010

Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82.

Authors:
Sylvie Miquel Eric Peyretaillade Laurent Claret Amélie de Vallée Carole Dossat Benoit Vacherie El Hajji Zineb Beatrice Segurens Valerie Barbe Pierre Sauvanet Christel Neut Jean-Frédéric Colombel Claudine Medigue Francisco J M Mojica Pierre Peyret Richard Bonnet Arlette Darfeuille-Michaud

PLoS One 2010 Sep 17;5(9). Epub 2010 Sep 17.

Clermont Université, Université d'Auvergne, JE2526, INRA, USC-2018, Clermont-Ferrand, France.

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September 2010

Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.

Authors:
Sébastien Terrat Eric Peyretaillade Olivier Gonçalves Eric Dugat-Bony Fabrice Gravelat Anne Moné Corinne Biderre-Petit Delphine Boucher Julien Troquet Pierre Peyret

BMC Bioinformatics 2010 Sep 23;11:478. Epub 2010 Sep 23.

Clermont Université, Université d'Auvergne, Laboratoire: Microorganismes Génome et Environnement, BP 10448, F-63000 Clermont-Ferrand, France.

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September 2010

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation.

Authors:
Eric Peyretaillade Olivier Gonçalves Sébastien Terrat Eric Dugat-Bony Patrick Wincker Robert S Cornman Jay D Evans Frédéric Delbac Pierre Peyret

BMC Genomics 2009 Dec 15;10:607. Epub 2009 Dec 15.

Clermont Université, Université d'Auvergne, Laboratoire: Microorganismes Génome et Environnement, BP 10448, F-63000 CLERMONT-FERRAND.

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December 2009

Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics.

Authors:
Jean-François Brugère Agnès Mihajlovski Mohieddine Missaoui Pierre Peyret

Expert Rev Mol Diagn 2009 May;9(4):353-65

ERT-18 CIDAM, Université d'Auvergne, CRNH Auvergne, Place Henri Dunant, Clermont-Ferrand, France.

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May 2009

A comparison of algorithms for a complete backtranslation of oligopeptides.

Authors:
Mohieddine Missaoui David R C Hill Pierre Peyret

Int J Comput Biol Drug Des 2008 ;1(1):26-38

ISIMA/LIMOS UMR CNRS 6158, Blaise Pascal University, BP 10125, 63173 Aubière Cedex, France.

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February 2010

In vitro propagation of the microsporidian pathogen Brachiola algerae and studies of its chromosome and ribosomal DNA organization in the context of the complete genome sequencing project.

Authors:
Abdel Belkorchia Corinne Biderre Cécile Militon Valérie Polonais Patrick Wincker Claire Jubin Frédéric Delbac Eric Peyretaillade Pierre Peyret

Parasitol Int 2008 Mar 20;57(1):62-71. Epub 2007 Sep 20.

Laboratoire de Biologie des Protistes, UMR CNRS 6023, Université Blaise Pascal, 24 avenue des Landais, Campus des Cézeaux, 63177 Aubière Cedex, France.

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March 2008

PhylArray: phylogenetic probe design algorithm for microarray.

Authors:
Cécile Militon Sébastien Rimour Mohieddine Missaoui Corinne Biderre Vincent Barra David Hill Anne Moné Geneviève Gagne Harald Meier Eric Peyretaillade Pierre Peyret

Bioinformatics 2007 Oct 12;23(19):2550-7. Epub 2007 Aug 12.

Génomique Intégrée des Interactions Microbiennes, Laboratoire de Biologie des Protistes, UMR CNRS 6023, Blaise Pascal University, 24 avenue des Landais, Campus des Cézeaux, France.

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October 2007

EnP1 and EnP2, two proteins associated with the Encephalitozoon cuniculi endospore, the chitin-rich inner layer of the microsporidian spore wall.

Authors:
Isabelle Peuvel-Fanget Valérie Polonais Damien Brosson Catherine Texier Lauriane Kuhn Pierre Peyret Christian Vivarès Frédéric Delbac

Int J Parasitol 2006 Mar 22;36(3):309-18. Epub 2005 Nov 22.

Equipe Parasitologie Moléculaire et Cellulaire, LBP, UMR CNRS 6023, Université Blaise Pascal, 24 Avenue des Landais, 63177 Aubière Cedex, France.

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March 2006

GoArrays: highly dynamic and efficient microarray probe design.

Authors:
Sébastien Rimour David Hill Cécile Militon Pierre Peyret

Bioinformatics 2005 Apr 5;21(7):1094-103. Epub 2004 Nov 5.

LIMOS UMR CNRS 6158, Blaise Pascal University, Clermont-Ferrand II BP 10125, 63177 Aubiere Cedex, France.

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April 2005

Homology modeling and calculation of the cobalt cluster charges of the Encephazlitozoon cuniculi methionine aminopeptidase, a potential target for drug design.

Authors:
François Bontems Pascal le Floch Francis Duffieux Corinne Biderre Pierre Peyret Jean-Yves Lallemand

Biophys Chem 2003 Aug;105(1):29-43

Equipe ICSN-RMN, Ecole Polytechnique, F91128 Palaiseau France.

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August 2003

The microsporidian polar tube: evidence for a third polar tube protein (PTP3) in Encephalitozoon cuniculi.

Authors:
Isabelle Peuvel Pierre Peyret Guy Méténier Christian P Vivarès Frédéric Delbac

Mol Biochem Parasitol 2002 Jun;122(1):69-80

Equipe Parasitologie Moléculaire et Cellulaire, Laboratoire Biologie des Protistes, UMR CNRS 6023, Université Blaise Pascal, Aubiere, France.

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June 2002