Pierre Formenty

Pierre Formenty

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Taxonomy of the order Mononegavirales: update 2019.

Arch Virol 2019 Jul;164(7):1967-1980

Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 2170, USA.

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http://dx.doi.org/10.1007/s00705-019-04247-4DOI Listing
July 2019

Taxonomy of the order Mononegavirales: second update 2018.

Arch Virol 2019 Apr;164(4):1233-1244

Division of Clinical Research (DCR), Integrated Research Facility at Fort Detrick (IRF-Frederick), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.

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http://link.springer.com/10.1007/s00705-018-04126-4
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http://dx.doi.org/10.1007/s00705-018-04126-4DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6460460PMC
April 2019

Laboratory findings, compassionate use of favipiravir, and outcome in patients with Ebola virus disease, Guinea, 2015 - a retrospective observational study.

J Infect Dis 2019 Feb 21. Epub 2019 Feb 21.

Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.

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http://dx.doi.org/10.1093/infdis/jiz078DOI Listing
February 2019

Taxonomy of the order Mononegavirales: update 2018.

Arch Virol 2018 Aug 11;163(8):2283-2294. Epub 2018 Apr 11.

Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.

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http://dx.doi.org/10.1007/s00705-018-3814-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6076851PMC
August 2018

Ebola RNA Persistence in Semen of Ebola Virus Disease Survivors - Final Report.

N Engl J Med 2017 10 14;377(15):1428-1437. Epub 2015 Oct 14.

From the Sierra Leone Ministry of Health and Sanitation (G.F.D., F.Y., F.J., A.H.W., S.J.S., J.B., A.J.), the Sierra Leone Ministry of Defense (F.R.S., T.A.M., M.S.D., B.I., F.S.), and the Sierra Leone Ministry of Social Welfare, Gender, and Children's Affairs (T.D.) - all in Freetown, Sierra Leone; World Health Organization (N.B., S.L.R.M., J.E.M., P.G., N.H., A.E.T., A.A., A.C., M.C., T.W., F.K.E., D.N., A. Banerjee, K.N.D., M. Lamunu, S.L., P.F.) and the Joint United Nations Program on HIV/AIDS (P.O.), Geneva; Chinese Center for Disease Control and Prevention (W.X., H.L., W.L., Y.Z., Yongjian Liu, Yang Liu, K.X., G.W., M. Liang, Q.S., Y.H.) and Beijing Institute of Microbiology and Epidemiology (Y. Lan), Beijing; and the Centers for Disease Control and Prevention, Atlanta (B.K., E.E., C.R., K.B., J.K., N.A., S.D.B., E.M., T.M., B.R.E., A. Brault, J.W., T.S., S.T.N., O.M., U.S.).

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http://dx.doi.org/10.1056/NEJMoa1511410DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5798881PMC
October 2017

Taxonomy of the order Mononegavirales: update 2017.

Arch Virol 2017 Aug 7;162(8):2493-2504. Epub 2017 Apr 7.

Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.

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http://dx.doi.org/10.1007/s00705-017-3311-7DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5831667PMC
August 2017

Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials.

Syst Biol 2017 05;66(3):463-473

Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Frederick, 21702 MD, USA.

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http://dx.doi.org/10.1093/sysbio/syw096DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5837305PMC
May 2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Nature 2017 04 12;544(7650):309-315. Epub 2017 Apr 12.

Institute of Evolutionary Biology, University of Edinburgh, King's Buildings, Edinburgh EH9 3FL, UK.

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http://dx.doi.org/10.1038/nature22040DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5712493PMC
April 2017

Drivers of Rift Valley fever epidemics in Madagascar.

Proc Natl Acad Sci U S A 2017 01 17;114(5):938-943. Epub 2017 Jan 17.

French National Agricultural Research Center for International Development, Animal Health Department, UMR Astre, Campus International de Baillarguet, 34398 Montpellier, France.

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http://www.pnas.org/lookup/doi/10.1073/pnas.1607948114
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http://dx.doi.org/10.1073/pnas.1607948114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5293023PMC
January 2017

Analysis of Diagnostic Findings From the European Mobile Laboratory in Guéckédou, Guinea, March 2014 Through March 2015.

J Infect Dis 2016 10 16;214(suppl 3):S250-S257. Epub 2016 Sep 16.

European Mobile Laboratory Consortium National Institute for Infectious Diseases Lazzaro Spallanzani IRCCS, Rome, Italy.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050480PMC
http://dx.doi.org/10.1093/infdis/jiw269DOI Listing
October 2016

More Challenges From Ebola: Infection of the Central Nervous System.

J Infect Dis 2016 10;214(suppl 3):S294-S296

Special Pathogens Program, National Microbiology Laboratory, Public Health Agency of Canada Department of Medical Microbiology Department of Immunology, University of Manitoba, Winnipeg, Canada Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia.

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http://dx.doi.org/10.1093/infdis/jiw257DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050477PMC
October 2016

Taxonomy of the order Mononegavirales: update 2016.

Arch Virol 2016 Aug 23;161(8):2351-60. Epub 2016 May 23.

Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), B-8200 Research Plaza, Fort Detrick, Frederick, MD, 21702, USA.

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http://dx.doi.org/10.1007/s00705-016-2880-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4947412PMC
August 2016

Unique human immune signature of Ebola virus disease in Guinea.

Nature 2016 May;533(7601):100-4

Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany.

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http://dx.doi.org/10.1038/nature17949DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4876960PMC
May 2016

Real-time, portable genome sequencing for Ebola surveillance.

Authors:
Joshua Quick Nicholas J Loman Sophie Duraffour Jared T Simpson Ettore Severi Lauren Cowley Joseph Akoi Bore Raymond Koundouno Gytis Dudas Amy Mikhail Nobila Ouédraogo Babak Afrough Amadou Bah Jonathan Hj Baum Beate Becker-Ziaja Jan-Peter Boettcher Mar Cabeza-Cabrerizo Alvaro Camino-Sanchez Lisa L Carter Juiliane Doerrbecker Theresa Enkirch Isabel Graciela García Dorival Nicole Hetzelt Julia Hinzmann Tobias Holm Liana Eleni Kafetzopoulou Michel Koropogui Abigail Kosgey Eeva Kuisma Christopher H Logue Antonio Mazzarelli Sarah Meisel Marc Mertens Janine Michel Didier Ngabo Katja Nitzsche Elisa Pallash Livia Victoria Patrono Jasmine Portmann Johanna Gabriella Repits Natasha Yasmin Rickett Andrea Sachse Katrin Singethan Inês Vitoriano Rahel L Yemanaberhan Elsa G Zekeng Racine Trina Alexander Bello Amadou Alpha Sall Ousmane Faye Oumar Faye N'Faly Magassouba Cecelia V Williams Victoria Amburgey Linda Winona Emily Davis Jon Gerlach Franck Washington Vanessa Monteil Marine Jourdain Marion Bererd Alimou Camara Hermann Somlare Abdoulaye Camara Marianne Gerard Guillaume Bado Bernard Baillet Déborah Delaune Koumpingnin Yacouba Nebie Abdoulaye Diarra Yacouba Savane Raymond Bernard Pallawo Giovanna Jaramillo Gutierrez Natacha Milhano Isabelle Roger Christopher J Williams Facinet Yattara Kuiama Lewandowski Jamie Taylor Philip Rachwal Daniel Turner Georgios Pollakis Julian A Hiscox David A Matthews Matthew K O'Shea Andrew McD Johnston Duncan Wilson Emma Hutley Erasmus Smit Antonino Di Caro Roman Woelfel Kilian Stoecker Erna Fleischmann Martin Gabriel Simon A Weller Lamine Koivogui Boubacar Diallo Sakoba Keita Andrew Rambaut Pierre Formenty Stephan Gunther Miles W Carroll

Nature 2016 Feb 3;530(7589):228-232. Epub 2016 Feb 3.

The European Mobile Laboratory Consortium, Bernhard-Nocht-Institute for Tropical Medicine, D-20359 Hamburg, Germany.

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http://dx.doi.org/10.1038/nature16996DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4817224PMC
February 2016

Molecular Evidence of Sexual Transmission of Ebola Virus.

N Engl J Med 2015 Dec 14;373(25):2448-54. Epub 2015 Oct 14.

From the Center for Genome Sciences (S.E.M., J.R.K., J.T.L., M.R.W., K.P., M.S.-L., G.P.) and Diagnostic Systems Division (R.J.S.), U.S. Army Medical Research Institute of Infectious Diseases, and the Division of Clinical Research, Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health (NIH) (J.P., L.E.H., J.H.K.) - all in Frederick, MD; the Ministry of Health and Social Welfare (T.G.N., S.B.S., M.B., F.N.K.) and the World Health Organization (WHO) (G.J.D.-W., R.M.), Monrovia, and the Liberian Institute for Biomedical Research, Charlesville (L.F., F.T., F.B.) - all in Liberia; WHO, Geneva (T.C.-L., A.G., P.F.); the Centers for Disease Control and Prevention, Atlanta (A.C., B.W.H., U.S., D.J.B., A.S.L., D.E.W., T.L., S.T.N., K.M.D.C.); Illumina, San Diego, CA (G.P.S., S.M.G.); WHO, New Delhi, India (S.A.S); Rocky Mountain Laboratories, Division of Intramural Research, National Institute of Allergy and Infectious Diseases, NIH, Hamilton, MT (E.W., N.D., V.J.M., D.S.); Naval Medical Research Unit 3, Cairo (J.W.D.); and the Foundation Mérieux, Washington, DC (J.F.).

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http://dx.doi.org/10.1056/NEJMoa1509773DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4711355PMC
December 2015

Field Evaluation of Capillary Blood Samples as a Collection Specimen for the Rapid Diagnosis of Ebola Virus Infection During an Outbreak Emergency.

Clin Infect Dis 2015 Sep 19;61(5):669-75. Epub 2015 May 19.

Institute of Virology, Philipps University, Marburg European Mobile Laboratory Consortium, Hamburg, Germany Centre for Infection Research, Partner Site Giessen-Marburg-Langen, Philipps University, Germany.

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http://dx.doi.org/10.1093/cid/civ397DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4530726PMC
September 2015

Temporal and spatial analysis of the 2014-2015 Ebola virus outbreak in West Africa.

Authors:
Miles W Carroll David A Matthews Julian A Hiscox Michael J Elmore Georgios Pollakis Andrew Rambaut Roger Hewson Isabel García-Dorival Joseph Akoi Bore Raymond Koundouno Saïd Abdellati Babak Afrough John Aiyepada Patience Akhilomen Danny Asogun Barry Atkinson Marlis Badusche Amadou Bah Simon Bate Jan Baumann Dirk Becker Beate Becker-Ziaja Anne Bocquin Benny Borremans Andrew Bosworth Jan Peter Boettcher Angela Cannas Fabrizio Carletti Concetta Castilletti Simon Clark Francesca Colavita Sandra Diederich Adomeh Donatus Sophie Duraffour Deborah Ehichioya Heinz Ellerbrok Maria Dolores Fernandez-Garcia Alexandra Fizet Erna Fleischmann Sophie Gryseels Antje Hermelink Julia Hinzmann Ute Hopf-Guevara Yemisi Ighodalo Lisa Jameson Anne Kelterbaum Zoltan Kis Stefan Kloth Claudia Kohl Miša Korva Annette Kraus Eeva Kuisma Andreas Kurth Britta Liedigk Christopher H Logue Anja Lüdtke Piet Maes James McCowen Stéphane Mély Marc Mertens Silvia Meschi Benjamin Meyer Janine Michel Peter Molkenthin César Muñoz-Fontela Doreen Muth Edmund N C Newman Didier Ngabo Lisa Oestereich Jennifer Okosun Thomas Olokor Racheal Omiunu Emmanuel Omomoh Elisa Pallasch Bernadett Pályi Jasmine Portmann Thomas Pottage Catherine Pratt Simone Priesnitz Serena Quartu Julie Rappe Johanna Repits Martin Richter Martin Rudolf Andreas Sachse Kristina Maria Schmidt Gordian Schudt Thomas Strecker Ruth Thom Stephen Thomas Ekaete Tobin Howard Tolley Jochen Trautner Tine Vermoesen Inês Vitoriano Matthias Wagner Svenja Wolff Constanze Yue Maria Rosaria Capobianchi Birte Kretschmer Yper Hall John G Kenny Natasha Y Rickett Gytis Dudas Cordelia E M Coltart Romy Kerber Damien Steer Callum Wright Francis Senyah Sakoba Keita Patrick Drury Boubacar Diallo Hilde de Clerck Michel Van Herp Armand Sprecher Alexis Traore Mandiou Diakite Mandy Kader Konde Lamine Koivogui N'Faly Magassouba Tatjana Avšič-Županc Andreas Nitsche Marc Strasser Giuseppe Ippolito Stephan Becker Kilian Stoecker Martin Gabriel Hervé Raoul Antonino Di Caro Roman Wölfel Pierre Formenty Stephan Günther

Nature 2015 Aug 17;524(7563):97-101. Epub 2015 Jun 17.

1] The European Mobile Laboratory Consortium, Bernhard-Nocht-Institute for Tropical Medicine, D-20359 Hamburg, Germany [2] Bernhard Nocht Institute for Tropical Medicine, D-20359 Hamburg, Germany [3] German Centre for Infection Research (DZIF), 38124 Braunschweig, Germany.

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http://dx.doi.org/10.1038/nature14594DOI Listing
August 2015

The Case for Improved Diagnostic Tools to Control Ebola Virus Disease in West Africa and How to Get There.

PLoS Negl Trop Dis 2015 Jun 11;9(6):e0003734. Epub 2015 Jun 11.

Department of Pandemic and Epidemic Diseases, World Health Organization, Geneva, Switzerland.

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http://dx.doi.org/10.1371/journal.pntd.0003734DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4465932PMC
June 2015

Ebola virus disease in the Democratic Republic of Congo.

N Engl J Med 2014 Nov 15;371(22):2083-91. Epub 2014 Oct 15.

From the Centre International de Recherches Médicales de Franceville, World Health Organization (WHO) Collaborating Center, Franceville, Gabon (G.D.M., N.B., I.L., E.M.L.); Ministry of Health (B.K.I., F.K.), Institut National de Recherche Biomédicale (J.K., P.M.K., J.-J.T.M.), and the WHO (V.M., J.C.), Kinshasa, Democratic Republic of Congo; Centre National de la Recherche Scientifique, Unité Epidémiologie et Physiopathologie des Virus Oncogènes (CNRS UMR3569) (N.B.), Eco-anthropologie et Ethnobiologie, UMR 7206 CNRS-MNHN (A.E.), and Institut Pasteur, Unité de Recherche et d'Expertise Environnement et Risques Infectieux, Cellule d'Intervention Biologique d'Urgence (J.-C.M.), Paris, and Institut de Recherche pour le Développement, Unité Maladies Infectieuses et Vecteurs Ecologie, Genetique, Evolution et Controle IRD 224-CNRS 5290-UM1-UM2, Montpellier (E.M.L.) - all in France; Public Health Agency of Canada, Winnipeg (G.K.); and the WHO, Geneva (E.B., S.B., P.F., L.G.-A., J.-M.O.-B., C.D.).

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http://dx.doi.org/10.1056/NEJMoa1411099DOI Listing
November 2014

The international Ebola emergency.

N Engl J Med 2014 Sep 20;371(13):1180-3. Epub 2014 Aug 20.

From the World Health Organization, Geneva.

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http://dx.doi.org/10.1056/NEJMp1409858DOI Listing
September 2014

Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.

Viruses 2014 Sep 26;6(9):3663-82. Epub 2014 Sep 26.

IViral Special Pathogens Branch, Division of High-Consequence Pathogens Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA.

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http://dx.doi.org/10.3390/v6093663DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189044PMC
September 2014

Mapping monkeypox transmission risk through time and space in the Congo Basin.

PLoS One 2013 5;8(9):e74816. Epub 2013 Sep 5.

Centers for Disease Control and Prevention, Atlanta, Georgia, United States of America ; Oak Ridge Institute for Science and Education, Oak Ridge, Tennessee, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0074816PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3764067PMC
July 2014

Ecology and geography of human monkeypox case occurrences across Africa.

J Wildl Dis 2012 Apr;48(2):335-47

United States Department of Agriculture-Animal and Plant Health Inspection Service, Wildlife Services, National Wildlife Research Center, 4101 W Laporte Ave, Fort Collins, Colorado 80521, USA.

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http://dx.doi.org/10.7589/0090-3558-48.2.335DOI Listing
April 2012

Human Ebola outbreak resulting from direct exposure to fruit bats in Luebo, Democratic Republic of Congo, 2007.

Vector Borne Zoonotic Dis 2009 Dec;9(6):723-8

Centre International de Recherches Médicales de Franceville (CIRMF), Franceville, Gabon.

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http://dx.doi.org/10.1089/vbz.2008.0167DOI Listing
December 2009

The origin of malignant malaria.

Proc Natl Acad Sci U S A 2009 Sep 3;106(35):14902-7. Epub 2009 Aug 3.

Laboratory of Medical Zoology, Division of Entomology (PSIS), University of Massachusetts, Amherst, MA 01003, USA.

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http://dx.doi.org/10.1073/pnas.0907740106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720412PMC
September 2009

Prediction of a Rift Valley fever outbreak.

Proc Natl Acad Sci U S A 2009 Jan 14;106(3):955-9. Epub 2009 Jan 14.

National Aeronautics and Space Administration Goddard Space Flight Center, Biospheric Sciences Branch, Code 614.4, Greenbelt, MD 20771, USA.

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http://www.pnas.org/content/early/2009/01/14/0806490106.full
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http://csis.org/files/attachments/031113_Tucker.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.0806490106
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http://dx.doi.org/10.1073/pnas.0806490106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2626607PMC
January 2009

Hantavirus infection: a review and global update.

J Infect Dev Ctries 2008 Feb 1;2(1):3-23. Epub 2008 Feb 1.

Biorisk Reduction for Dangerous Pathogens, Department of Epidemic and Pandemic Alert and Response, World Health Organization, Geneva, Switzerland .

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http://www.enivd.de/han_glob_08.pdf
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February 2008

Marburg virus Angola infection of rhesus macaques: pathogenesis and treatment with recombinant nematode anticoagulant protein c2.

J Infect Dis 2007 Nov;196 Suppl 2:S372-81

Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, MD, USA.

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https://academic.oup.com/jid/article-lookup/doi/10.1086/5206
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http://dx.doi.org/10.1086/520608DOI Listing
November 2007

Conflict and emerging infectious diseases.

Emerg Infect Dis 2007 Nov;13(11):1625-31

Disease Control in Humanitarian Emerfencies, Health Security and Environmental Cluster, World Health Organization, Geneva, Switzerland.

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http://wwwnc.cdc.gov/eid/article/13/11/06-1093_article.htm
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3375795PMC
http://dx.doi.org/10.3201/eid1311.061093DOI Listing
November 2007

A tale of two clades: monkeypox viruses.

J Gen Virol 2005 Oct;86(Pt 10):2661-72

National Center for Infectious Disease, Centers for Disease Control and Prevention, 1600 Clifton Road NE, Mailstop G43, Atlanta, GA 30333, USA.

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http://dx.doi.org/10.1099/vir.0.81215-0DOI Listing
October 2005

Trigger events: enviroclimatic coupling of Ebola hemorrhagic fever outbreaks.

Am J Trop Med Hyg 2004 Nov;71(5):664-74

Biospheric Sciences Branch, Laboratory for Terrestrial Physics, National Aeronautics and Space Administration-Goddard Space Flight Center, Greenbelt, MD 20771, USA.

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November 2004

Multiple Ebola virus transmission events and rapid decline of central African wildlife.

Science 2004 Jan;303(5656):387-90

Institut de Recherche pour le Développement, UR034, Centre International de Recherches Médicales de Franceville, BP 769 Franceville, Gabon.

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http://dx.doi.org/10.1126/science.1092528DOI Listing
January 2004