Pier Luigi Buttigieg

Pier Luigi Buttigieg

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Pier Luigi Buttigieg

Pier Luigi Buttigieg

Publications by authors named "Pier Luigi Buttigieg"

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27Publications

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Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities.

ISME J 2020 Jan 27. Epub 2020 Jan 27.

HGF-MPG Joint Research Group for Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, Bremen, Germany.

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http://dx.doi.org/10.1038/s41396-020-0588-4DOI Listing
January 2020

Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions.

PeerJ 2018 3;6:e5984. Epub 2018 Dec 3.

Tropical Marine Microbiology, Department of Biogeochemistry and Geology, Leibniz-Centre for Tropical Marine Reseach, Bremen, Germany.

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http://dx.doi.org/10.7717/peerj.5984DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6282939PMC
December 2018

Marine microbes in 4D-using time series observation to assess the dynamics of the ocean microbiome and its links to ocean health.

Curr Opin Microbiol 2018 06 21;43:169-185. Epub 2018 Feb 21.

Alfred-Wegener-Institut, Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, D-27570 Bremerhaven, Germany; Max Planck Institut für Marine Mikrobiologie, Celsiusstr. 1, D-28359 Bremen, Germany; MARUM-Center for Marine Environmental Sciences, University of Bremen, Leobener Str. 8, D-28334 Bremen, Germany. Electronic address:

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http://dx.doi.org/10.1016/j.mib.2018.01.015DOI Listing
June 2018

Modelling plankton ecosystems in the meta-omics era. Are we ready?

Mar Genomics 2017 Apr 7;32:1-17. Epub 2017 Mar 7.

Stazione Zoologica Anton Dohrn, Villa Comunale, 80121 Naples, Italy. Electronic address:

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http://dx.doi.org/10.1016/j.margen.2017.02.006DOI Listing
April 2017

Value, but high costs in post-deposition data curation.

Database (Oxford) 2016 9;2016. Epub 2016 Feb 9.

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.

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http://dx.doi.org/10.1093/database/bav126DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4747322PMC
October 2016

EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation.

Database (Oxford) 2016 20;2016. Epub 2016 Feb 20.

Disease Systems Biology Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, DK-2200, Copenhagen, Denmark

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https://academic.oup.com/database/article-lookup/doi/10.1093
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http://dx.doi.org/10.1093/database/baw005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4761108PMC
October 2016

The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation.

J Biomed Semantics 2016 Sep 23;7(1):57. Epub 2016 Sep 23.

Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.

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http://dx.doi.org/10.1186/s13326-016-0097-6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5035502PMC
September 2016

Biogeographic patterns of bacterial microdiversity in Arctic deep-sea sediments (HAUSGARTEN, Fram Strait).

Front Microbiol 2014 5;5:660. Epub 2015 Jan 5.

Max Planck Institute for Marine Microbiology, HGF-MPG Bridge-Group for Deep Sea Ecology and Technology Bremen, Germany.

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http://dx.doi.org/10.3389/fmicb.2014.00660DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4283448PMC
January 2015

A guide to statistical analysis in microbial ecology: a community-focused, living review of multivariate data analyses.

FEMS Microbiol Ecol 2014 Dec 5;90(3):543-50. Epub 2014 Nov 5.

HGF-MPG Group for Deep Sea Ecology and Technology, Bremerhaven, Germany; Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany; MARUM Center for Marine Sciences, Bremen, Germany.

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http://dx.doi.org/10.1111/1574-6941.12437DOI Listing
December 2014

The R package otu2ot for implementing the entropy decomposition of nucleotide variation in sequence data.

Front Microbiol 2014 14;5:601. Epub 2014 Nov 14.

Organic Geochemistry Department, MARUM - Center for Marine Environmental Sciences Bremen, Germany ; HGF-MPG Group for Deep Sea Ecology and Technology, Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung Bremerhaven, Germany.

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http://dx.doi.org/10.3389/fmicb.2014.00601DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4231947PMC
December 2014

Ultra-high-resolution paleoenvironmental records via direct laser-based analysis of lipid biomarkers in sediment core samples.

Proc Natl Acad Sci U S A 2014 Nov 20;111(44):15669-74. Epub 2014 Oct 20.

Organic Geochemistry Group, MARUM Center for Marine Environmental Sciences and Department of Geosciences, University of Bremen, 28359 Bremen, Germany;

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http://www.pnas.org/cgi/doi/10.1073/pnas.1405237111
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http://dx.doi.org/10.1073/pnas.1405237111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4226096PMC
November 2014

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

J Biomed Semantics 2014 Feb 5;5(1). Epub 2014 Feb 5.

Database Center for Life Science, Research Organization of Information and Systems, 2-11-16, Yayoi, Bunkyo-ku, Tokyo 113-0032, Japan.

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http://dx.doi.org/10.1186/2041-1480-5-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3978116PMC
February 2014

The environment ontology: contextualising biological and biomedical entities.

J Biomed Semantics 2013 Dec 11;4(1):43. Epub 2013 Dec 11.

HGF-MPG Research Group on Deep-Sea Ecology and Technology, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Am Handelshafen 12, Bremerhaven 27570, Germany.

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http://dx.doi.org/10.1186/2041-1480-4-43DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3904460PMC
December 2013

Quantifying the effect of environment stability on the transcription factor repertoire of marine microbes.

Microb Inform Exp 2011 Sep 7;1(1). Epub 2011 Sep 7.

Max Planck Institute for Marine Microbiology, Celsiusstrasse 1, 28359 Bremen, Germany.

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http://dx.doi.org/10.1186/2042-5783-1-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3372289PMC
September 2011

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Authors:
Pelin Yilmaz Renzo Kottmann Dawn Field Rob Knight James R Cole Linda Amaral-Zettler Jack A Gilbert Ilene Karsch-Mizrachi Anjanette Johnston Guy Cochrane Robert Vaughan Christopher Hunter Joonhong Park Norman Morrison Philippe Rocca-Serra Peter Sterk Manimozhiyan Arumugam Mark Bailey Laura Baumgartner Bruce W Birren Martin J Blaser Vivien Bonazzi Tim Booth Peer Bork Frederic D Bushman Pier Luigi Buttigieg Patrick S G Chain Emily Charlson Elizabeth K Costello Heather Huot-Creasy Peter Dawyndt Todd DeSantis Noah Fierer Jed A Fuhrman Rachel E Gallery Dirk Gevers Richard A Gibbs Inigo San Gil Antonio Gonzalez Jeffrey I Gordon Robert Guralnick Wolfgang Hankeln Sarah Highlander Philip Hugenholtz Janet Jansson Andrew L Kau Scott T Kelley Jerry Kennedy Dan Knights Omry Koren Justin Kuczynski Nikos Kyrpides Robert Larsen Christian L Lauber Teresa Legg Ruth E Ley Catherine A Lozupone Wolfgang Ludwig Donna Lyons Eamonn Maguire Barbara A Methé Folker Meyer Brian Muegge Sara Nakielny Karen E Nelson Diana Nemergut Josh D Neufeld Lindsay K Newbold Anna E Oliver Norman R Pace Giriprakash Palanisamy Jörg Peplies Joseph Petrosino Lita Proctor Elmar Pruesse Christian Quast Jeroen Raes Sujeevan Ratnasingham Jacques Ravel David A Relman Susanna Assunta-Sansone Patrick D Schloss Lynn Schriml Rohini Sinha Michelle I Smith Erica Sodergren Aymé Spo Jesse Stombaugh James M Tiedje Doyle V Ward George M Weinstock Doug Wendel Owen White Andrew Whiteley Andreas Wilke Jennifer R Wortman Tanya Yatsunenko Frank Oliver Glöckner

Nat Biotechnol 2011 May;29(5):415-20

Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology, Bremen, Germany.

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https://darchive.mblwhoilibrary.org/bitstream/handle/1912/46
Web Search
http://www.nature.com/doifinder/10.1038/nbt.1823
Publisher Site
http://dx.doi.org/10.1038/nbt.1823DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367316PMC
May 2011

Perspectives on presentation and pedagogy in aid of bioinformatics education.

Brief Bioinform 2010 Nov 19;11(6):587-97. Epub 2010 Aug 19.

Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany.

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https://academic.oup.com/bib/article-lookup/doi/10.1093/bib/
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http://dx.doi.org/10.1093/bib/bbq062DOI Listing
November 2010

Megx.net: integrated database resource for marine ecological genomics.

Nucleic Acids Res 2010 Jan 25;38(Database issue):D391-5. Epub 2009 Oct 25.

Microbial Genomics Group, Max Planck Institute for Marine Microbiology, D-28359 Bremen, Germany. rkottman@mpi-bremen

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http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkp918
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http://dx.doi.org/10.1093/nar/gkp918DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2808895PMC
January 2010

Cathepsin B is essential for regeneration of scratch-wounded normal human epidermal keratinocytes.

Eur J Cell Biol 2007 Dec 24;86(11-12):747-61. Epub 2007 Jul 24.

School of Engineering and Science, Jacobs University Bremen (formerly International University Bremen), Campus Ring 6, Research II-107, D-28759 Bremen, Germany.

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http://linkinghub.elsevier.com/retrieve/pii/S017193350700094
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http://dx.doi.org/10.1016/j.ejcb.2007.03.009DOI Listing
December 2007