Phillip SanMiguel

Phillip SanMiguel

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Phillip SanMiguel

Phillip SanMiguel

Publications by authors named "Phillip SanMiguel"

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37Publications

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High-level, constitutive expression of the mgtC gene confers increased thermotolerance on Salmonella enterica serovar Typhimurium.

Mol Microbiol 2018 08 31;109(3):327-344. Epub 2018 Jul 31.

Department of Biological Sciences, Purdue University.

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http://dx.doi.org/10.1111/mmi.13988DOI Listing
August 2018

New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus).

BMC Genomics 2018 Apr 4;19(1):233. Epub 2018 Apr 4.

Department of Forestry and Natural Resources, Purdue University, 715 W. State Street, West Lafayette, IN, 47907, USA.

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http://dx.doi.org/10.1186/s12864-018-4615-zDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885362PMC
April 2018

The Cell Wall Arabinose-Deficient Arabidopsis thaliana Mutant murus5 Encodes a Defective Allele of REVERSIBLY GLYCOSYLATED POLYPEPTIDE2.

Plant Physiol 2016 07 23;171(3):1905-20. Epub 2016 May 23.

Department of Botany and Plant Pathology (C.K.D., R.A.M., A.T.O., N.C.C.), Department of Biological Sciences (M.R.B., M.C.M., N.C.C.), Bindley Bioscience Center (B.R.C., M.C.M., N.C.C.), and Department of Horticulture and Landscape Architecture (P.J.S.), Purdue University, West Lafayette, Indiana 47907-2054;Université de Picardie Jules Verne, EA 3900-BIOPI, 80039 Amiens, France (C.R.);Heidelberg Institut für Theoretische Studien, Molecular Biomechanics, 69118 Heidelberg, Germany (D.M.); andDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut 06269 (C.H., W.-D.R.)

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http://dx.doi.org/10.1104/pp.15.01922DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4936543PMC
July 2016

Complete genome sequence of Mycoplasma wenyonii strain Massachusetts.

J Bacteriol 2012 Oct;194(19):5458-9

Department of Veterinary Pathobiology, Purdue University, West Lafayette, Indiana, USA.

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http://dx.doi.org/10.1128/JB.01240-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3457230PMC
October 2012

Mycoplasma haemocanis--the canine hemoplasma and its feline counterpart in the genomic era.

Vet Res 2012 Sep 28;43:66. Epub 2012 Sep 28.

Department of Veterinary Pathobiology, Purdue University, 725 Harrison Street, West Lafayette, IN, 47907, USA.

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http://dx.doi.org/10.1186/1297-9716-43-66DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3496576PMC
September 2012

Complete genome sequence of Mycoplasma haemocanis strain Illinois.

J Bacteriol 2012 Mar;194(6):1605-6

Department of Veterinary Pathobiology, Purdue University, West Lafayette, Indiana, USA.

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http://dx.doi.org/10.1128/JB.06781-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3294856PMC
March 2012

Next-generation sequencing and potential applications in fungal genomics.

Methods Mol Biol 2011 ;722:51-60

Purdue Genomics Core Facility, Purdue University, West Lafayette, IN, USA.

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http://dx.doi.org/10.1007/978-1-61779-040-9_4DOI Listing
September 2011

Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence.

Vet Res 2011 Sep 21;42:102. Epub 2011 Sep 21.

Department of Comparative Pathobiology, Purdue University, 725 Harrison Street, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1186/1297-9716-42-102DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3196708PMC
September 2011

Complete genome sequence of Mycoplasma suis and insights into its biology and adaption to an erythrocyte niche.

PLoS One 2011 May 10;6(5):e19574. Epub 2011 May 10.

Department of Comparative Pathobiology, School of Veterinary Medicine, Purdue University, West Lafayette, Indiana, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0019574PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3091866PMC
May 2011

An examination of targeted gene neighborhoods in strawberry.

BMC Plant Biol 2010 May 4;10:81. Epub 2010 May 4.

Department of Biological Sciences, University of New Hampshire, Durham, NH 03824, USA.

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http://dx.doi.org/10.1186/1471-2229-10-81DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2890015PMC
May 2010

A lineage-specific centromere retrotransposon in Oryza brachyantha.

Plant J 2009 Dec 21;60(5):820-31. Epub 2009 Aug 21.

Molecular and Evolutionary Genetics, Purdue University, 915 W. State Street, West Lafayette, IN 47907, USA.

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http://dx.doi.org/10.1111/j.1365-313X.2009.04005.xDOI Listing
December 2009

The B73 maize genome: complexity, diversity, and dynamics.

Authors:
Patrick S Schnable Doreen Ware Robert S Fulton Joshua C Stein Fusheng Wei Shiran Pasternak Chengzhi Liang Jianwei Zhang Lucinda Fulton Tina A Graves Patrick Minx Amy Denise Reily Laura Courtney Scott S Kruchowski Chad Tomlinson Cindy Strong Kim Delehaunty Catrina Fronick Bill Courtney Susan M Rock Eddie Belter Feiyu Du Kyung Kim Rachel M Abbott Marc Cotton Andy Levy Pamela Marchetto Kerri Ochoa Stephanie M Jackson Barbara Gillam Weizu Chen Le Yan Jamey Higginbotham Marco Cardenas Jason Waligorski Elizabeth Applebaum Lindsey Phelps Jason Falcone Krishna Kanchi Thynn Thane Adam Scimone Nay Thane Jessica Henke Tom Wang Jessica Ruppert Neha Shah Kelsi Rotter Jennifer Hodges Elizabeth Ingenthron Matt Cordes Sara Kohlberg Jennifer Sgro Brandon Delgado Kelly Mead Asif Chinwalla Shawn Leonard Kevin Crouse Kristi Collura Dave Kudrna Jennifer Currie Ruifeng He Angelina Angelova Shanmugam Rajasekar Teri Mueller Rene Lomeli Gabriel Scara Ara Ko Krista Delaney Marina Wissotski Georgina Lopez David Campos Michele Braidotti Elizabeth Ashley Wolfgang Golser HyeRan Kim Seunghee Lee Jinke Lin Zeljko Dujmic Woojin Kim Jayson Talag Andrea Zuccolo Chuanzhu Fan Aswathy Sebastian Melissa Kramer Lori Spiegel Lidia Nascimento Theresa Zutavern Beth Miller Claude Ambroise Stephanie Muller Will Spooner Apurva Narechania Liya Ren Sharon Wei Sunita Kumari Ben Faga Michael J Levy Linda McMahan Peter Van Buren Matthew W Vaughn Kai Ying Cheng-Ting Yeh Scott J Emrich Yi Jia Ananth Kalyanaraman An-Ping Hsia W Brad Barbazuk Regina S Baucom Thomas P Brutnell Nicholas C Carpita Cristian Chaparro Jer-Ming Chia Jean-Marc Deragon James C Estill Yan Fu Jeffrey A Jeddeloh Yujun Han Hyeran Lee Pinghua Li Damon R Lisch Sanzhen Liu Zhijie Liu Dawn Holligan Nagel Maureen C McCann Phillip SanMiguel Alan M Myers Dan Nettleton John Nguyen Bryan W Penning Lalit Ponnala Kevin L Schneider David C Schwartz Anupma Sharma Carol Soderlund Nathan M Springer Qi Sun Hao Wang Michael Waterman Richard Westerman Thomas K Wolfgruber Lixing Yang Yeisoo Yu Lifang Zhang Shiguo Zhou Qihui Zhu Jeffrey L Bennetzen R Kelly Dawe Jiming Jiang Ning Jiang Gernot G Presting Susan R Wessler Srinivas Aluru Robert A Martienssen Sandra W Clifton W Richard McCombie Rod A Wing Richard K Wilson

Science 2009 Nov;326(5956):1112-5

Center for Plant Genomics, Iowa State University, Ames, IA 50011, USA.

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http://www.dawelab.org/wp-content/uploads/2011/03/schnable-2
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http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
Publisher Site
http://dx.doi.org/10.1126/science.1178534DOI Listing
November 2009

A unified classification system for eukaryotic transposable elements.

Nat Rev Genet 2007 Dec;8(12):973-82

Institute of Plant Biology, University Zurich, Zollikerstrasse 107, CH-8008 Zurich, Switzerland.

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http://dx.doi.org/10.1038/nrg2165DOI Listing
December 2007

The TIGR Maize Database.

Nucleic Acids Res 2006 Jan;34(Database issue):D771-6

The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.

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http://dx.doi.org/10.1093/nar/gkj072DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347435PMC
January 2006

Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries.

Genome Res 2005 Oct;15(10):1441-6

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1101/gr.3362105DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1240087PMC
October 2005

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes.

Genetics 2005 Jul 16;170(3):1209-20. Epub 2005 Apr 16.

Department of Genetics, University of Georgia, Athens, Georgia 30602, USA.

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http://dx.doi.org/10.1534/genetics.105.040915DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1451190PMC
July 2005

A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.

Proc Natl Acad Sci U S A 2003 Oct 6;100(21):12265-70. Epub 2003 Oct 6.

Department of Biological Sciences, Purdue University, 201 South University, West Lafayette, IN 47907-2064, USA.

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http://dx.doi.org/10.1073/pnas.1434476100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC218747PMC
October 2003

Structure and evolution of the Cinful retrotransposon family of maize.

Genome 2003 Oct;46(5):745-52

Department of Biological Sciences, Purdue University, West Lafayette, IN 47907-1392, USA.

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http://dx.doi.org/10.1139/g03-061DOI Listing
October 2003

High-Cot sequence analysis of the maize genome.

Plant J 2003 Apr;34(2):249-55

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907-1392, USA.

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http://dx.doi.org/10.1046/j.1365-313x.2003.01716.xDOI Listing
April 2003

Structural analysis of the maize rp1 complex reveals numerous sites and unexpected mechanisms of local rearrangement.

Plant Cell 2002 Dec;14(12):3213-23

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC151213PMC
http://dx.doi.org/10.1105/tpc.006338DOI Listing
December 2002

Comparative sequence analysis of the sorghum Rph region and the maize Rp1 resistance gene complex.

Plant Physiol 2002 Dec;130(4):1728-38

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1104/pp.014951DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC166687PMC
December 2002

Methylation-spanning linker libraries link gene-rich regions and identify epigenetic boundaries in Zea mays.

Genome Res 2002 Sep;12(9):1345-9

Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907, USA.

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http://dx.doi.org/10.1101/gr.185902DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC186659PMC
September 2002

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m).

Funct Integr Genomics 2002 May 12;2(1-2):70-80. Epub 2002 Apr 12.

Purdue Genomics Core Facility, 1057 WSLR, West Lafayette, IN 47907-1057, USA.

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http://link.springer.com/10.1007/s10142-002-0056-4
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http://dx.doi.org/10.1007/s10142-002-0056-4DOI Listing
May 2002