Publications by authors named "Philip Supply"

92Publications

Niche specialization and spread of Staphylococcus capitis involved in neonatal sepsis.

Nat Microbiol 2020 05 27;5(5):735-745. Epub 2020 Apr 27.

Institut des Agents Infectieux, Département de Bactériologie, Centre National de Référence des Staphylocoques, Hospices Civils de Lyon, Lyon, France.

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http://dx.doi.org/10.1038/s41564-020-0676-2DOI Listing
May 2020

Analysis of Mycobacterium tuberculosis genetic lineages circulating in Riga and Riga region, Latvia, isolated between 2008 and 2012.

Infect Genet Evol 2020 03 26;78:104126. Epub 2019 Nov 26.

Latvian Biomedical Research and Study Centre, Latvia; Riga Stradiņš University, Latvia. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2019.104126DOI Listing
March 2020

MAC-INMV-SSR: a web application dedicated to genotyping members of Mycobacterium avium complex (MAC) including Mycobacterium avium subsp. paratuberculosis strains.

Infect Genet Evol 2020 01 18;77:104075. Epub 2019 Oct 18.

ISP, INRA, Université de Tours, UMR 1282, 37380 Nouzilly, France. Electronic address:

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http://dx.doi.org/10.1016/j.meegid.2019.104075DOI Listing
January 2020

oonotic tuberculosis in humans assessed by next-generation sequencing: an 18-month nationwide study in Lebanon.

Eur Respir J 2020 01 2;55(1). Epub 2020 Jan 2.

Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Centre d'Infection et d'Immunité de Lille, Lille, France

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http://dx.doi.org/10.1183/13993003.00513-2019DOI Listing
January 2020

How Well Do Routine Molecular Diagnostics Detect Rifampin Heteroresistance in Mycobacterium tuberculosis?

J Clin Microbiol 2019 11 23;57(11). Epub 2019 Oct 23.

Mycobacteriology Unit, Department of Biomedical Sciences, Institute of Tropical Medicine, Antwerp, Belgium.

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http://dx.doi.org/10.1128/JCM.00717-19DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6812990PMC
November 2019

Multidrug-resistant tuberculosis outbreak in South Africa - Authors' reply.

Lancet Infect Dis 2019 02 6;19(2):135-136. Epub 2018 Dec 6.

Laboratory of Clinical Bacteriology and Mycology, Department of Microbiology and Immunology, KU Leuven, Leuven 3000, Belgium. Electronic address:

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http://dx.doi.org/10.1016/S1473-3099(18)30738-2DOI Listing
February 2019

Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.

N Engl J Med 2018 10 26;379(15):1403-1415. Epub 2018 Sep 26.

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http://dx.doi.org/10.1056/NEJMoa1800474DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6121966PMC
October 2018

Precision tuberculosis control by genome sequencing: Benefit and challenges of a new standard.

Authors:
Philip Supply

EBioMedicine 2018 10 1;36:14-15. Epub 2018 Sep 1.

Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Centre d'Infection et d'Immunité de Lille, F-59000 Lille, France. Electronic address:

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http://dx.doi.org/10.1016/j.ebiom.2018.08.052DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6197496PMC
October 2018

Occurrence and Nature of Double Alleles in Variable-Number Tandem-Repeat Patterns of More than 8,000 Mycobacterium tuberculosis Complex Isolates in The Netherlands.

J Clin Microbiol 2018 02 24;56(2). Epub 2018 Jan 24.

National Tuberculosis Reference Laboratory, Centre for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.

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http://jcm.asm.org/lookup/doi/10.1128/JCM.00761-17
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http://dx.doi.org/10.1128/JCM.00761-17DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5786718PMC
February 2018

The Evolution of Strain Typing in the Mycobacterium tuberculosis Complex.

Adv Exp Med Biol 2017 ;1019:43-78

Université de Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Centre d'Infection et d'Immunité de Lille, F-59019, Lille, France.

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http://dx.doi.org/10.1007/978-3-319-64371-7_3DOI Listing
March 2018

The Biology and Epidemiology of Mycobacterium canettii.

Adv Exp Med Biol 2017 ;1019:27-41

Institut Pasteur, Unit for Integrated Mycobacterial Pathogenomics, 75724, Paris Cedex 15, France.

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http://dx.doi.org/10.1007/978-3-319-64371-7_2DOI Listing
March 2018

Impact of Genetic Diversity on the Biology of Mycobacterium tuberculosis Complex Strains.

Microbiol Spectr 2016 11;4(6)

Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, U1019 - UMR 8204 - CIIL - Centre d'Infection et d'Immunité de Lille, F-59000 Lille, France.

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http://dx.doi.org/10.1128/microbiolspec.TBTB2-0022-2016DOI Listing
November 2016

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

Nat Genet 2016 12 31;48(12):1535-1543. Epub 2016 Oct 31.

Swiss Tropical and Public Health Institute, Basel, Switzerland.

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http://jcm.asm.org/content/47/4/1119.full.pdf
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http://jcm.asm.org/content/early/2009/02/11/JCM.02142-08.ful
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http://dx.doi.org/10.1038/ng.3704DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5238942PMC
December 2016

Prospective genotyping of Mycobacterium tuberculosis from fresh clinical samples.

PLoS One 2014 14;9(10):e109547. Epub 2014 Oct 14.

INSERM U1019, Lille, France; CNRS UMR 8204, Lille, France; University of Lille Nord de France, Lille, France; Institut Pasteur de Lille, Center for Infection and Immunity of Lille, Lille, France; Genoscreen, Lille, France.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0109547PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4196917PMC
June 2015

Diversity and evolution of Mycobacterium tuberculosis: moving to whole-genome-based approaches.

Cold Spring Harb Perspect Med 2014 Sep 4;4(12):a021188. Epub 2014 Sep 4.

Institut National de la Santé et de la Recherche Medicalé (INSERM) U1019, 59019 Lille, France Centre National de la Recherche Scientifique (CNRS) UMR 8204, 59019 Lille, France Institut Pasteur de Lille, Center for Infection and Immunity of Lille, 59019 Lille, France Université Lille Nord de France, 59019 Lille, France.

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http://dx.doi.org/10.1101/cshperspect.a021188DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4292095PMC
September 2014

Optimization of standard 24-locus variable-number tandem-repeat typing of Mycobacterium tuberculosis isolates: a multicenter perspective.

J Clin Microbiol 2014 Sep;52(9):3518-9

INSERM U1019-CNRS UMR 8204, Center for Infection and Immunity of Lille, Institut Pasteur de Lille, Université Nord de France, Lille, France.

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http://dx.doi.org/10.1128/JCM.01790-14DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4313198PMC
September 2014

A glimpse into the past and predictions for the future: the molecular evolution of the tuberculosis agent.

Mol Microbiol 2014 Sep 3;93(5):835-52. Epub 2014 Aug 3.

Institut Pasteur, Unit for Integrated Mycobacterial Pathogenomics, Paris, France.

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http://dx.doi.org/10.1111/mmi.12720DOI Listing
September 2014

Mycobacterial Pathogenomics and Evolution.

Microbiol Spectr 2014 Feb;2(1):MGM2-0025-2013

Institut Pasteur, Unit for Integrated Mycobacterial Pathogenomics, Paris, France.

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http://dx.doi.org/10.1128/microbiolspec.MGM2-0025-2013DOI Listing
February 2014

Rapidly progressing tuberculosis outbreak in a very low risk group.

Eur Respir J 2014 Mar 10;43(3):903-6. Epub 2013 Oct 10.

Montevideo.

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http://dx.doi.org/10.1183/09031936.00150413DOI Listing
March 2014

From multidrug- to extensively drug-resistant tuberculosis: upward trends as seen from a 15-year nationwide study.

PLoS One 2013 9;8(5):e63128. Epub 2013 May 9.

National Reference Centre of Tuberculosis and Mycobacteria, Communicable and Infectious Diseases, Scientific Institute of Public Health, Brussels, Belgium.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0063128PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3650045PMC
December 2013

Clustering of tuberculosis cases based on variable-number tandem-repeat typing in relation to the population structure of Mycobacterium tuberculosis in the Netherlands.

J Clin Microbiol 2013 Jul 8;51(7):2427-31. Epub 2013 May 8.

Department of Clinical Epidemiology, Biostatistics and Bioinformatics, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands.

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http://dx.doi.org/10.1128/JCM.00489-13DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3697710PMC
July 2013

Admixed phylogenetic distribution of drug resistant Mycobacterium tuberculosis in Saudi Arabia.

PLoS One 2013 1;8(2):e55598. Epub 2013 Feb 1.

Department of Infection and Immunity, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0055598PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3562184PMC
July 2013

Comparative study of IS6110 restriction fragment length polymorphism and variable-number tandem-repeat typing of Mycobacterium tuberculosis isolates in the Netherlands, based on a 5-year nationwide survey.

J Clin Microbiol 2013 Apr 30;51(4):1193-8. Epub 2013 Jan 30.

National Tuberculosis Reference Laboratory, Laboratory for Infectious Diseases and Perinatal Screening (LIS), Centre for Infectious Disease Control (CIB), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.

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http://dx.doi.org/10.1128/JCM.03061-12DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3666783PMC
April 2013

Complete genome sequence of the dairy isolate Streptococcus macedonicus ACA-DC 198.

J Bacteriol 2012 Apr;194(7):1838-9

Laboratory of Dairy Research, Department of Food Science and Technology, Agricultural University of Athens, Athens, Greece.

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http://dx.doi.org/10.1128/JB.06804-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3302469PMC
April 2012

Online tools for polyphasic analysis of Mycobacterium tuberculosis complex genotyping data: now and next.

Infect Genet Evol 2012 Jun 10;12(4):748-54. Epub 2012 Feb 10.

Department of Periodontology, University Hospital Münster, Münster, Germany.

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http://dx.doi.org/10.1016/j.meegid.2012.01.021DOI Listing
June 2012

Evaluation of 24-locus MIRU-VNTR in extrapulmonary specimens: study from a tertiary centre in Mumbai.

Tuberculosis (Edinb) 2012 May 8;92(3):264-72. Epub 2012 Feb 8.

P. D. Hinduja National Hospital and Medical Research Centre, Mahim, Mumbai 400016, India.

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http://dx.doi.org/10.1016/j.tube.2012.01.002DOI Listing
May 2012

First worldwide proficiency study on variable-number tandem-repeat typing of Mycobacterium tuberculosis complex strains.

J Clin Microbiol 2012 Mar 14;50(3):662-9. Epub 2011 Dec 14.

National Tuberculosis Reference Laboratory, Laboratory for Infectious Diseases and Perinatal Screening, Centre for Infectious Disease Control, National Institute for PublicHealth and the Environment, Bilthoven, Netherland.

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http://dx.doi.org/10.1128/JCM.00607-11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3295139PMC
March 2012

One year nationwide evaluation of 24-locus MIRU-VNTR genotyping on Slovenian Mycobacterium tuberculosis isolates.

Respir Med 2011 Oct;105 Suppl 1:S67-73

Laboratory for Mycobacteria, University Clinic of Respiratory and Allergic Diseases Colnik, Colnik, Slovenia.

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http://dx.doi.org/10.1016/S0954-6111(11)70014-2DOI Listing
October 2011

Microevolution of Mycobacterium tuberculosis in a tuberculosis patient.

J Clin Microbiol 2010 Oct 4;48(10):3813-6. Epub 2010 Aug 4.

Department of Comparative Medicine, King Faisal Specialist Hospital and Research Centre, Riyadh, Saudi Arabia.

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http://dx.doi.org/10.1128/JCM.00556-10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2953119PMC
October 2010

MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria.

Nucleic Acids Res 2010 Jul 10;38(Web Server issue):W326-31. Epub 2010 May 10.

Department of Periodontology, University Hospital Münster, Münster, Germany.

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http://dx.doi.org/10.1093/nar/gkq351DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2896200PMC
July 2010

Impact of HIV infection on the recurrence of tuberculosis in South India.

J Infect Dis 2010 Mar;201(5):691-703

Tuberculosis Research Centre, Indian Council of Medical Research, Chennai 600 031, India.

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http://dx.doi.org/10.1086/650528DOI Listing
March 2010

Origin, spread and demography of the Mycobacterium tuberculosis complex.

PLoS Pathog 2008 Sep 19;4(9):e1000160. Epub 2008 Sep 19.

Department of Biology, Lehrstuhl für Zoologie und Evolutionsbiologie, University of Konstanz, Konstanz, Germany.

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http://dx.doi.org/10.1371/journal.ppat.1000160DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2528947PMC
September 2008

Three-year population-based evaluation of standardized mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing of Mycobacterium tuberculosis.

J Clin Microbiol 2008 Apr 30;46(4):1398-406. Epub 2008 Jan 30.

Molecular Mechanisms of Bacterial Pathogenesis, INSERM U629, Institut de Biologie de Lille/Institut Pasteur de Lille, 1 rue du Professeur Calmette, F-59021 Lille Cedex, France.

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http://dx.doi.org/10.1128/JCM.02089-07DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2292969PMC
April 2008

Mixed infection and clonal representativeness of a single sputum sample in tuberculosis patients from a penitentiary hospital in Georgia.

Respir Res 2006 Jul 17;7:99. Epub 2006 Jul 17.

Prince Leopold Institute of Tropical Medicine, Mycobacteriology Unit, Nationalestraat 155, B-2000 Antwerp, Belgium.

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http://dx.doi.org/10.1186/1465-9921-7-99DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538999PMC
July 2006

Against all odds: molecular confirmation of an implausible case of bone tuberculosis.

Clin Infect Dis 2006 Jun 19;42(11):e86-8. Epub 2006 Apr 19.

Laboratoire de Bactériologie-Hygiène, Centre Hospitalier Régional Universitaire, Lille, France.

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http://dx.doi.org/10.1086/503571DOI Listing
June 2006

Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strains.

J Clin Microbiol 2005 Nov;43(11):5628-38

Mycobacteria Reference Unit, Diagnostic Laboratory for Infectious Diseases and Perinatal Screening, P.O. Box 1, 3720 BA Bilthoven, The Netherlands.

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http://dx.doi.org/10.1128/JCM.43.11.5628-5638.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1287774PMC
November 2005

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis.

PLoS Pathog 2005 Sep 19;1(1):e5. Epub 2005 Aug 19.

Laboratoire de Référence des Mycobactéries, Institut Pasteur, Paris, France.

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http://dx.doi.org/10.1371/journal.ppat.0010005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1238740PMC
September 2005

Use of variable-number tandem-repeat typing to differentiate Mycobacterium tuberculosis Beijing family isolates from Hong Kong and comparison with IS6110 restriction fragment length polymorphism typing and spoligotyping.

J Clin Microbiol 2005 Jan;43(1):314-20

Mycobacteria Reference Unit, Diagnostic Laboratory for infectious Diseases and Perinatal Screening, National Institute of Public Health and the Environment, Bilthoven, The Netherlands.

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http://dx.doi.org/10.1128/JCM.43.1.314-320.2005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC540154PMC
January 2005

Genotypic and phenotypic heterogeneity among Mycobacterium tuberculosis isolates from pulmonary tuberculosis patients.

J Clin Microbiol 2004 Dec;42(12):5528-36

Mycobacteriology Unit, Department of Microbiology, Prince Leopold Institute of Tropical Medicine, Nationalestraat 155, B-2000 Antwerp, Belgium.

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http://dx.doi.org/10.1128/JCM.42.12.5528-5536.2004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC535260PMC
December 2004

Utility of fast mycobacterial interspersed repetitive unit-variable number tandem repeat genotyping in clinical mycobacteriological analysis.

Clin Infect Dis 2004 Sep 27;39(6):783-9. Epub 2004 Aug 27.

Institut Pasteur de Bruxelles, Laboratoire Tuberculose et Mycobacteries, Brussels, Belgium.

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https://academic.oup.com/cid/article-lookup/doi/10.1086/4233
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http://dx.doi.org/10.1086/423383DOI Listing
September 2004

Intracellular autoregulation of the Mycobacterium tuberculosis PrrA response regulator.

Microbiology (Reading) 2004 Jan;150(Pt 1):241-246

INSERM U447, Institut Pasteur de Lille, 1 rue du Professeur Calmette, F-59019 Lille Cedex, France.

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http://dx.doi.org/10.1099/mic.0.26516-0DOI Listing
January 2004

Linkage disequilibrium between minisatellite loci supports clonal evolution of Mycobacterium tuberculosis in a high tuberculosis incidence area.

Mol Microbiol 2003 Jan;47(2):529-38

Laboratoire des Mécanismes Moléculaires de la Pathogenèse Bactérienne, INSERM U447, Institut Pasteur de Lille, Cedex, France.

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http://dx.doi.org/10.1046/j.1365-2958.2003.03315.xDOI Listing
January 2003

Stability of variable-number tandem repeats of mycobacterial interspersed repetitive units from 12 loci in serial isolates of Mycobacterium tuberculosis.

J Clin Microbiol 2002 Dec;40(12):4561-6

Laboratoire des Mécanismes Moléculaires de la Pathogenèse Bactérienne, INSERM U447, Institut Pasteur de Lille, F-59019 Lille Cedex, France.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC154626PMC
http://dx.doi.org/10.1128/jcm.40.12.4561-4566.2002DOI Listing
December 2002

Transient requirement of the PrrA-PrrB two-component system for early intracellular multiplication of Mycobacterium tuberculosis.

Infect Immun 2002 May;70(5):2256-63

Laboratoire des Mécanismes Moléculaires de la Pathogenèse Bactérienne, INSERM U447, Institut Pasteur de Lille, F-59019 Lille Cedex.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC127906PMC
http://dx.doi.org/10.1128/iai.70.5.2256-2263.2002DOI Listing
May 2002

Molecular characterization of the mycobacterial SenX3-RegX3 two-component system: evidence for autoregulation.

Microbiology (Reading) 2000 Dec;146 Pt 12:3091-3098

INSERM U447, Institut Pasteur de Lille/Institut de Biologie de Lille, 1 rue du Professeur Calmette, F-59019 Lille Cedex, France1.

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http://mic.microbiologyresearch.org/content/journal/micro/10
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http://dx.doi.org/10.1099/00221287-146-12-3091DOI Listing
December 2000