Philip Cayting

Philip Cayting

UNVERIFIED PROFILE

Are you Philip Cayting?   Register this Author

Register author
Philip Cayting

Philip Cayting

Publications by authors named "Philip Cayting"

Are you Philip Cayting?   Register this Author

14Publications

388Reads

32Profile Views

A comparative encyclopedia of DNA elements in the mouse genome.

Authors:
Feng Yue Yong Cheng Alessandra Breschi Jeff Vierstra Weisheng Wu Tyrone Ryba Richard Sandstrom Zhihai Ma Carrie Davis Benjamin D Pope Yin Shen Dmitri D Pervouchine Sarah Djebali Robert E Thurman Rajinder Kaul Eric Rynes Anthony Kirilusha Georgi K Marinov Brian A Williams Diane Trout Henry Amrhein Katherine Fisher-Aylor Igor Antoshechkin Gilberto DeSalvo Lei-Hoon See Meagan Fastuca Jorg Drenkow Chris Zaleski Alex Dobin Pablo Prieto Julien Lagarde Giovanni Bussotti Andrea Tanzer Olgert Denas Kanwei Li M A Bender Miaohua Zhang Rachel Byron Mark T Groudine David McCleary Long Pham Zhen Ye Samantha Kuan Lee Edsall Yi-Chieh Wu Matthew D Rasmussen Mukul S Bansal Manolis Kellis Cheryl A Keller Christapher S Morrissey Tejaswini Mishra Deepti Jain Nergiz Dogan Robert S Harris Philip Cayting Trupti Kawli Alan P Boyle Ghia Euskirchen Anshul Kundaje Shin Lin Yiing Lin Camden Jansen Venkat S Malladi Melissa S Cline Drew T Erickson Vanessa M Kirkup Katrina Learned Cricket A Sloan Kate R Rosenbloom Beatriz Lacerda de Sousa Kathryn Beal Miguel Pignatelli Paul Flicek Jin Lian Tamer Kahveci Dongwon Lee W James Kent Miguel Ramalho Santos Javier Herrero Cedric Notredame Audra Johnson Shinny Vong Kristen Lee Daniel Bates Fidencio Neri Morgan Diegel Theresa Canfield Peter J Sabo Matthew S Wilken Thomas A Reh Erika Giste Anthony Shafer Tanya Kutyavin Eric Haugen Douglas Dunn Alex P Reynolds Shane Neph Richard Humbert R Scott Hansen Marella De Bruijn Licia Selleri Alexander Rudensky Steven Josefowicz Robert Samstein Evan E Eichler Stuart H Orkin Dana Levasseur Thalia Papayannopoulou Kai-Hsin Chang Arthur Skoultchi Srikanta Gosh Christine Disteche Piper Treuting Yanli Wang Mitchell J Weiss Gerd A Blobel Xiaoyi Cao Sheng Zhong Ting Wang Peter J Good Rebecca F Lowdon Leslie B Adams Xiao-Qiao Zhou Michael J Pazin Elise A Feingold Barbara Wold James Taylor Ali Mortazavi Sherman M Weissman John A Stamatoyannopoulos Michael P Snyder Roderic Guigo Thomas R Gingeras David M Gilbert Ross C Hardison Michael A Beer Bing Ren

Nature 2014 Nov;515(7527):355-64

Ludwig Institute for Cancer Research and University of California, San Diego School of Medicine, 9500 Gilman Drive, La Jolla, California 92093, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature13992DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266106PMC
November 2014

An encyclopedia of mouse DNA elements (Mouse ENCODE).

August 2012

Segmental duplications in the human genome reveal details of pseudogene formation.

Nucleic Acids Res 2010 Nov 8;38(20):6997-7007. Epub 2010 Jul 8.

Program in Computational Biology and Bioinformatics, Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkq587DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2978362PMC
November 2010

Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.

Nat Biotechnol 2010 Jan 27;28(1):47-55. Epub 2009 Dec 27.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.

View Article

Download full-text PDF

Source
http://www.nature.com/articles/nbt.1600
Publisher Site
http://dx.doi.org/10.1038/nbt.1600DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2951730PMC
January 2010

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes.

Genome Biol 2009 5;10(1):R2. Epub 2009 Jan 5.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2009-10-1-r2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687790PMC
September 2009

Pseudofam: the pseudogene families database.

Nucleic Acids Res 2009 Jan 28;37(Database issue):D738-43. Epub 2008 Oct 28.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkn758DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686518PMC
January 2009

Analysis of nuclear receptor pseudogenes in vertebrates: how the silent tell their stories.

Mol Biol Evol 2008 Jan 7;25(1):131-43. Epub 2007 Dec 7.

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msm251DOI Listing
January 2008

Uncovering trends in gene naming.

Genome Biol 2008 Jan 31;9(1):401. Epub 2008 Jan 31.

Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/gb-2008-9-1-401DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2395243PMC
January 2008

Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation.

Nucleic Acids Res 2007 Jan 11;35(Database issue):D55-60. Epub 2006 Nov 11.

Center for Comparative Genomics and Bioinformatics, 506B Wartik, Pennsylvania State University, University Park, PA 16802, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/nar/gkl851DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1669708PMC
January 2007