Phanourios Tamamis

Phanourios Tamamis

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Phanourios Tamamis

Phanourios Tamamis

Publications by authors named "Phanourios Tamamis"

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29Publications

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Computational Design of Functional Amyloid Materials with Cesium Binding, Deposition, and Capture Properties.

J Phys Chem B 2018 Aug 20;122(30):7555-7568. Epub 2018 Jul 20.

Department of Materials Science and Technology , University of Crete , Heraklion 700 13 , Crete , Greece.

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August 2018

A high-throughput and rapid computational method for screening of RNA post-transcriptional modifications that can be recognized by target proteins.

Methods 2018 Jul 1;143:34-47. Epub 2018 Feb 1.

Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, United States. Electronic address:

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July 2018

Virtual Screening of Chemical Compounds for Discovery of Complement C3 Ligands.

ACS Omega 2018 Jun 15;3(6):6427-6438. Epub 2018 Jun 15.

Department of Bioengineering, University of California, Riverside, 900 University Avenue, Riverside, California 92521, United States.

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June 2018

Molecular Modeling of Chemoreceptor:Ligand Interactions.

Methods Mol Biol 2018 ;1729:353-372

Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, USA.

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January 2018

Uncovering the Binding and Specificity of β-Wrapins for Amyloid-β and α-Synuclein.

J Phys Chem B 2016 12 9;120(50):12781-12794. Epub 2016 Dec 9.

Artie McFerrin Department of Chemical Engineering, Texas A&M University , College Station, Texas 77843-3122, United States.

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December 2016

Highly Accurate Structure-Based Prediction of HIV-1 Coreceptor Usage Suggests Intermolecular Interactions Driving Tropism.

PLoS One 2016 9;11(2):e0148974. Epub 2016 Feb 9.

Artie McFerrin Department of Chemical Engineering, Texas A&M University, College Station, TX, United States of America.

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July 2016

Combination of theoretical and experimental approaches for the design and study of fibril-forming peptides.

Methods Mol Biol 2014 ;1216:53-70

Department of Physics, University of Cyprus, 20537, CY1678, Nicosia, Cyprus.

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May 2015

Molecular recognition of CCR5 by an HIV-1 gp120 V3 loop.

PLoS One 2014 24;9(4):e95767. Epub 2014 Apr 24.

Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, United States of America.

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January 2015

Elucidating a key anti-HIV-1 and cancer-associated axis: the structure of CCL5 (Rantes) in complex with CCR5.

Sci Rep 2014 Jun 26;4:5447. Epub 2014 Jun 26.

Department of Chemical and Biological Engineering, Princeton University, NJ, USA.

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June 2014

Princeton_TIGRESS: protein geometry refinement using simulations and support vector machines.

Proteins 2014 May 22;82(5):794-814. Epub 2013 Nov 22.

Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey, 08540.

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May 2014

Elucidating a key component of cancer metastasis: CXCL12 (SDF-1α) binding to CXCR4.

J Chem Inf Model 2014 Apr 8;54(4):1174-88. Epub 2014 Apr 8.

Department of Chemical and Biological Engineering, Princeton University , New Jersey 08544, United States.

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April 2014

Molecular recognition of CXCR4 by a dual tropic HIV-1 gp120 V3 loop.

Biophys J 2013 Sep;105(6):1502-14

Department of Chemical and Biological Engineering, Princeton University, New Jersey.

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September 2013

Insights into the structure, correlated motions, and electrostatic properties of two HIV-1 gp120 V3 loops.

PLoS One 2012 19;7(11):e49925. Epub 2012 Nov 19.

Department of Bioengineering, University of California Riverside, Riverside, California, United States of America.

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May 2013

Molecular dynamics in drug design: new generations of compstatin analogs.

Chem Biol Drug Des 2012 May 9;79(5):703-18. Epub 2012 Feb 9.

Department of Bioengineering, University of California, Riverside, CA 92521, USA.

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May 2012

Species specificity of the complement inhibitor compstatin investigated by all-atom molecular dynamics simulations.

Proteins 2010 Sep;78(12):2655-67

Department of Physics, University of Cyprus, PO20537, Nicosia CY1678, Cyprus.

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September 2010

Amyloid-like self-assembly of peptide sequences from the adenovirus fiber shaft: insights from molecular dynamics simulations.

J Phys Chem B 2009 Nov;113(47):15639-47

Department of Physics, University of Cyprus, PO20537, CY1678 Nicosia, Cyprus.

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November 2009

Conformational analysis of compstatin analogues with molecular dynamics simulations in explicit water.

J Mol Graph Model 2007 Sep 4;26(2):571-80. Epub 2007 Apr 4.

Department of Physics, University of Cyprus, PO20537, CY1678 Nicosia, Cyprus.

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September 2007