Publications by authors named "Peter Woolf"

33Publications

Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.

Plant Cell 2013 Sep 6;25(9):3175-85. Epub 2013 Sep 6.

Department of Molecular, Cellular, and Developmental Biology, University of Michigan, An Arbor, Michigan 48109.

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September 2013

Smart pooling of mRNA samples for efficient transcript profiling.

Methods Mol Biol 2012 ;876:189-94

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI, USA.

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September 2012

A gene regulatory network for root epidermis cell differentiation in Arabidopsis.

PLoS Genet 2012 Jan 12;8(1):e1002446. Epub 2012 Jan 12.

Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI, USA.

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January 2012

The transcription factor osterix (SP7) regulates BMP6-induced human osteoblast differentiation.

J Cell Physiol 2012 Jun;227(6):2677-85

Department of Animal Biology, School of Veterinary Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

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June 2012

RegNetB: predicting relevant regulator-gene relationships in localized prostate tumor samples.

BMC Bioinformatics 2011 Jun 17;12:243. Epub 2011 Jun 17.

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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June 2011

Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks.

BMC Syst Biol 2011 May 27;5:86. Epub 2011 May 27.

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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May 2011

Time series gene expression profiling and temporal regulatory pathway analysis of BMP6 induced osteoblast differentiation and mineralization.

BMC Syst Biol 2011 May 23;5:82. Epub 2011 May 23.

Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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May 2011

vProtein: identifying optimal amino acid complements from plant-based foods.

PLoS One 2011 Apr 22;6(4):e18836. Epub 2011 Apr 22.

Foodwiki, Ann Arbor, Michigan, United States of America.

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April 2011

BN+1 Bayesian network expansion for identifying molecular pathway elements.

Commun Integr Biol 2010 Nov 1;3(6):549-54. Epub 2010 Nov 1.

Center for Computational Medicine and Bioinformatics; University of Michigan Medical School; University of Michigan; Michigan USA.

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November 2010

Reconstructing transcriptional regulatory networks using three-way mutual information and Bayesian networks.

Methods Mol Biol 2010 ;674:401-18

Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.

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December 2010

A mechanistic model of PCR for accurate quantification of quantitative PCR data.

PLoS One 2010 Aug 30;5(8):e12355. Epub 2010 Aug 30.

Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, United States of America.

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August 2010

poolMC: smart pooling of mRNA samples in microarray experiments.

BMC Bioinformatics 2010 Jun 2;11:299. Epub 2010 Jun 2.

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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June 2010

Bayesian network expansion identifies new ROS and biofilm regulators.

PLoS One 2010 Mar 3;5(3):e9513. Epub 2010 Mar 3.

Center for Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America.

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March 2010

Python Environment for Bayesian Learning: Inferring the Structure of Bayesian Networks from Knowledge and Data.

J Mach Learn Res 2009 Jun;10:159-162

Department of Chemical Engineering, 3320 G.G. Brown, Ann Arbor, MI 48103, USA.

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June 2009

Using mechanistic Bayesian networks to identify downstream targets of the sonic hedgehog pathway.

BMC Bioinformatics 2009 Dec 18;10:433. Epub 2009 Dec 18.

Bioinformatics Program, University of Michigan, Ann Arbor, MI 48109, USA.

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December 2009

GAGE: generally applicable gene set enrichment for pathway analysis.

BMC Bioinformatics 2009 May 27;10:161. Epub 2009 May 27.

Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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May 2009

Pooling in high-throughput drug screening.

Curr Opin Drug Discov Devel 2009 May;12(3):339-50

Department of Chemical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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May 2009

Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information.

BMC Bioinformatics 2008 Nov 3;9:467. Epub 2008 Nov 3.

Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, USA.

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November 2008