Peter W H Holland

Peter W H Holland

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Peter W H Holland

Peter W H Holland

Publications by authors named "Peter W H Holland"

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Gene profiling of head mesoderm in early zebrafish development: insights into the evolution of cranial mesoderm.

Evodevo 2019 6;10:14. Epub 2019 Jul 6.

1Faculty of Biology, Medicine and Health, The University of Manchester, Oxford Road, Manchester, M13 9PT UK.

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http://dx.doi.org/10.1186/s13227-019-0128-3DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6612195PMC
July 2019

Of eyes and embryos: subfunctionalization of the CRX homeobox gene in mammalian evolution.

Proc Biol Sci 2019 Jul 24;286(1907):20190830. Epub 2019 Jul 24.

Department of Zoology, University of Oxford, 11a Mansfield Road, Oxford OX1 3SZ, UK.

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http://dx.doi.org/10.1098/rspb.2019.0830DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6661347PMC
July 2019

Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty.

Nat Commun 2018 04 30;9(1):1730. Epub 2018 Apr 30.

Department of Zoology, University of Oxford, Oxford, OX1 3PS, UK.

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http://dx.doi.org/10.1038/s41467-018-04136-5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5928047PMC
April 2018

Diversification of Hox Gene Clusters in Osteoglossomorph Fish in Comparison to Other Teleosts and the Spotted Gar Outgroup.

J Exp Zool B Mol Dev Evol 2017 Nov 23;328(7):638-644. Epub 2017 Feb 23.

Department of Zoology, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1002/jez.b.22726DOI Listing
November 2017

Novel and divergent genes in the evolution of placental mammals.

Proc Biol Sci 2017 Oct;284(1864)

Department of Zoology, University of Oxford, Oxford, UK

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http://dx.doi.org/10.1098/rspb.2017.1357DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5647298PMC
October 2017

A sister of regulates genes expressed in pre-implantation human development.

Open Biol 2017 04;7(4)

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1098/rsob.170027DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5413911PMC
April 2017

New genes from old: asymmetric divergence of gene duplicates and the evolution of development.

Philos Trans R Soc Lond B Biol Sci 2017 02;372(1713)

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1098/rstb.2015.0480DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5182412PMC
February 2017

Diversity of human and mouse homeobox gene expression in development and adult tissues.

BMC Dev Biol 2016 11 3;16(1):40. Epub 2016 Nov 3.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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http://dx.doi.org/10.1186/s12861-016-0140-yDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5094009PMC
November 2016

A Diversity of Conserved and Novel Ovarian MicroRNAs in the Speckled Wood (Pararge aegeria).

PLoS One 2015 10;10(11):e0142243. Epub 2015 Nov 10.

Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0142243PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4640560PMC
June 2016

Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution.

Genome Biol Evol 2016 Feb 9;8(3):579-87. Epub 2016 Feb 9.

Department of Zoology, University of Oxford, United Kingdom

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http://dx.doi.org/10.1093/gbe/evw015DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824169PMC
February 2016

Did homeobox gene duplications contribute to the Cambrian explosion?

Zoological Lett 2015 13;1. Epub 2015 Jan 13.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS UK.

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http://dx.doi.org/10.1186/s40851-014-0004-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4604119PMC
November 2015

The Hox cluster microRNA miR-615: a case study of intronic microRNA evolution.

Evodevo 2015 7;6:31. Epub 2015 Oct 7.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS UK.

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http://dx.doi.org/10.1186/s13227-015-0027-1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4597612PMC
October 2015

Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution.

BMC Biol 2015 Aug 1;13:56. Epub 2015 Aug 1.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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http://dx.doi.org/10.1186/s12915-015-0165-xDOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4522105PMC
August 2015

Strepsiptera, phylogenomics and the long branch attraction problem.

PLoS One 2014 1;9(10):e107709. Epub 2014 Oct 1.

Department of Integrative Biology, University of California, Berkeley, CA, United States of America; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0107709PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182670PMC
June 2015

Discovery and classification of homeobox genes in animal genomes.

Methods Mol Biol 2014 ;1196:3-18

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK,

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http://dx.doi.org/10.1007/978-1-4939-1242-1_1DOI Listing
May 2015

A Burst of miRNA Innovation in the Early Evolution of Butterflies and Moths.

Mol Biol Evol 2015 May 8;32(5):1161-74. Epub 2015 Jan 8.

Department of Zoology, University of Oxford

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http://dx.doi.org/10.1093/molbev/msv004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4408404PMC
May 2015

Scenarios for the making of vertebrates.

Nature 2015 Apr;520(7548):450-5

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1038/nature14433DOI Listing
April 2015

Reinforcing the egg-timer: recruitment of novel lophotrochozoa homeobox genes to early and late development in the pacific oyster.

Genome Biol Evol 2015 Jan 27;7(3):677-88. Epub 2015 Jan 27.

Department of Zoology, University of Oxford, United Kingdom

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http://dx.doi.org/10.1093/gbe/evv018DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5322547PMC
January 2015

Enigmatic orthology relationships between Hox clusters of the African butterfly fish and other teleosts following ancient whole-genome duplication.

Mol Biol Evol 2014 Oct 27;31(10):2592-611. Epub 2014 Jun 27.

Department of Zoology, University of Oxford, Oxford, United Kingdom

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http://dx.doi.org/10.1093/molbev/msu202DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166920PMC
October 2014

Genomic organisation of the seven ParaHox genes of coelacanths.

J Exp Zool B Mol Dev Evol 2014 Sep 17;322(6):352-8. Epub 2013 Jun 17.

School of Biological Sciences, Bangor University, Bangor, Gwynedd, United Kingdom.

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http://dx.doi.org/10.1002/jez.b.22513DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4471637PMC
September 2014

Evolution of homeobox genes.

Wiley Interdiscip Rev Dev Biol 2013 Jan-Feb;2(1):31-45. Epub 2012 Sep 10.

Department of Zoology, University of Oxford, OX1 3PS, UK.

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http://dx.doi.org/10.1002/wdev.78DOI Listing
January 2014

How are comparative genomics and the study of microRNAs changing our views on arthropod endocrinology and adaptations to the environment?

Gen Comp Endocrinol 2013 Jul 7;188:16-22. Epub 2013 Mar 7.

Department of Zoology, University of Oxford, South Parks Road, OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.ygcen.2013.02.013DOI Listing
July 2013

Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization.

Mol Biol Evol 2012 Jan 4;29(1):157-65. Epub 2011 Jul 4.

Department of Zoology, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msr175DOI Listing
January 2012

The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages.

BMC Evol Biol 2011 Jun 16;11:169. Epub 2011 Jun 16.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1186/1471-2148-11-169DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141429PMC
June 2011

The hypoxia-inducible transcription factor pathway regulates oxygen sensing in the simplest animal, Trichoplax adhaerens.

EMBO Rep 2011 Jan 26;12(1):63-70. Epub 2010 Nov 26.

Chemistry Research Laboratory and the Oxford Centre for Integrative Systems Biology, University of Oxford, Mansfield Road, Oxford OX1 3TA, UK.

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http://dx.doi.org/10.1038/embor.2010.170DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3024122PMC
January 2011

Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression.

Proc Biol Sci 2010 Nov 16;277(1699):3381-9. Epub 2010 Jun 16.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1098/rspb.2010.0647DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2982225PMC
November 2010

Parallel retention of Pdx2 genes in cartilaginous fish and coelacanths.

Mol Biol Evol 2010 Oct 12;27(10):2386-91. Epub 2010 May 12.

Department of Zoology, University of Oxford, Oxford, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msq121DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2944030PMC
October 2010

The origin and evolution of ARGFX homeobox loci in mammalian radiation.

BMC Evol Biol 2010 Jun 17;10:182. Epub 2010 Jun 17.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1186/1471-2148-10-182DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2894831PMC
June 2010

Degenerate evolution of the hedgehog gene in a hemichordate lineage.

Proc Natl Acad Sci U S A 2009 May 20;106(18):7491-4. Epub 2009 Apr 20.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, United Kingdom.

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http://www.pnas.org/content/106/18/7491.full.pdf
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http://www.pnas.org/cgi/doi/10.1073/pnas.0810430106
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http://dx.doi.org/10.1073/pnas.0810430106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2678602PMC
May 2009

Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster.

Evol Dev 2008 Nov-Dec;10(6):725-30

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1111/j.1525-142X.2008.00286.xDOI Listing
January 2009

Protochordates.

Methods Mol Biol 2008 ;461:563-6

Department of Zoology, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1007/978-1-60327-483-8_38DOI Listing
January 2009

Wholemount in situ hybridization to amphioxus embryos.

Methods Mol Biol 2008 ;461:703-6

Department of Zoology, University of Oxford, Oxford, UK.

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http://dx.doi.org/10.1007/978-1-60327-483-8_48DOI Listing
January 2009

Asymmetry in a pterobranch hemichordate and the evolution of left-right patterning.

Dev Dyn 2008 Dec;237(12):3634-9

Department of Zoology, University of Oxford, South Parks Road, Oxford, United Kingdom.

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http://dx.doi.org/10.1002/dvdy.21588DOI Listing
December 2008

Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae.

Dev Genes Evol 2008 Dec 17;218(11-12):579-90. Epub 2008 Sep 17.

Department of Biological Sciences, Graduate School of Science and Engineering, Tokyo Metropolitan University, 1-1 Minamiohsawa, Hachiohji, Tokyo, Japan.

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http://dx.doi.org/10.1007/s00427-008-0245-9DOI Listing
December 2008

Developmental biology of pterobranch hemichordates: history and perspectives.

Genesis 2008 Nov;46(11):587-91

Department of Zoology, University of Oxford, Oxford OX1 3PS, United Kingdom.

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http://doi.wiley.com/10.1002/dvg.20395
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http://dx.doi.org/10.1002/dvg.20395DOI Listing
November 2008

HomeoDB: a database of homeobox gene diversity.

Evol Dev 2008 Sep-Oct;10(5):516-8

Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, China.

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http://dx.doi.org/10.1111/j.1525-142X.2008.00266.xDOI Listing
November 2008

Protein evolution of ANTP and PRD homeobox genes.

BMC Evol Biol 2008 Jul 11;8:200. Epub 2008 Jul 11.

Instituto de Biologia Molecular e Celular (IBMC), University of Porto, Rua do Campo Alegre 823, 4150-180 Porto, Portugal.

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http://dx.doi.org/10.1186/1471-2148-8-200DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2491631PMC
July 2008

The urbilaterian Super-Hox cluster.

Trends Genet 2008 Jun 9;24(6):259-62. Epub 2008 May 9.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.tig.2007.09.006DOI Listing
June 2008

No more than 14: the end of the amphioxus Hox cluster.

Int J Biol Sci 2005 5;1(1):19-23. Epub 2005 Jan 5.

Departament de Genètica, Facultat de Biologia, Universitat de Barcelona. Av. Diagonal, 645. E-08028, Barcelona, Spain.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1140354PMC
http://dx.doi.org/10.7150/ijbs.1.19DOI Listing
February 2008

A degenerate ParaHox gene cluster in a degenerate vertebrate.

Mol Biol Evol 2007 Dec 25;24(12):2681-6. Epub 2007 Sep 25.

Department of Zoology, Oxford University, Oxford, United Kingdom.

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http://dx.doi.org/10.1093/molbev/msm194DOI Listing
December 2007

Origin and evolution of a myxozoan worm.

Integr Comp Biol 2007 Nov 27;47(5):752-8. Epub 2007 Jun 27.

*Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK; School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6BX, UK.

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http://dx.doi.org/10.1093/icb/icm026DOI Listing
November 2007

Classification and nomenclature of all human homeobox genes.

BMC Biol 2007 Oct 26;5:47. Epub 2007 Oct 26.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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http://bmcbiol.biomedcentral.com/articles/10.1186/1741-7007-
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http://dx.doi.org/10.1186/1741-7007-5-47DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2211742PMC
October 2007

Buddenbrockia is a cnidarian worm.

Science 2007 Jul;317(5834):116-8

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1126/science.1142024DOI Listing
July 2007

The origins of multicellularity: a multi-taxon genome initiative.

Trends Genet 2007 Mar 1;23(3):113-8. Epub 2007 Feb 1.

Canadian Institute for Advanced Research, Program in Evolutionary Biology, Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada.

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http://dx.doi.org/10.1016/j.tig.2007.01.005DOI Listing
March 2007

Annotation, nomenclature and evolution of four novel homeobox genes expressed in the human germ line.

Gene 2007 Jan 22;387(1-2):7-14. Epub 2006 Aug 22.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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http://linkinghub.elsevier.com/retrieve/pii/S037811190600501
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http://dx.doi.org/10.1016/j.gene.2006.07.034DOI Listing
January 2007

A Gbx homeobox gene in amphioxus: insights into ancestry of the ANTP class and evolution of the midbrain/hindbrain boundary.

Dev Biol 2006 Jul 9;295(1):40-51. Epub 2006 May 9.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.ydbio.2006.03.003DOI Listing
July 2006

Breakup of a homeobox cluster after genome duplication in teleosts.

Proc Natl Acad Sci U S A 2006 Jul 26;103(27):10369-10372. Epub 2006 Jun 26.

*Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, United Kingdom; and

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http://dx.doi.org/10.1073/pnas.0600341103DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1502464PMC
July 2006

The evolution of homeobox genes: Implications for the study of brain development.

Brain Res Bull 2005 Sep;66(4-6):484-90

Department of Zoology, University of Oxford, UK.

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http://dx.doi.org/10.1016/j.brainresbull.2005.06.003DOI Listing
September 2005

Phylogenomics of eukaryotes: impact of missing data on large alignments.

Mol Biol Evol 2004 Sep 2;21(9):1740-52. Epub 2004 Jun 2.

School of Animal and Microbial Sciences, The University of Reading, Reading, UK.

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http://dx.doi.org/10.1093/molbev/msh182DOI Listing
September 2004

Eleven daughters of NANOG.

Genomics 2004 Aug;84(2):229-38

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.ygeno.2004.02.014DOI Listing
August 2004

Amphioxus and ascidian Dmbx homeobox genes give clues to the vertebrate origins of midbrain development.

Development 2004 Jul 16;131(14):3285-94. Epub 2004 Jun 16.

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1242/dev.01201DOI Listing
July 2004

An antecedent of the MHC-linked genomic region in amphioxus.

Immunogenetics 2004 Feb 29;55(11):782-4. Epub 2004 Jan 29.

Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK.

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http://link.springer.com/content/pdf/10.1007/s00251-004-0642
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http://link.springer.com/10.1007/s00251-004-0642-9
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http://dx.doi.org/10.1007/s00251-004-0642-9DOI Listing
February 2004

The evolution of multicellularity and early animal genomes.

Curr Opin Genet Dev 2003 Dec;13(6):599-603

Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK.

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http://dx.doi.org/10.1016/j.gde.2003.09.002DOI Listing
December 2003

More genes in vertebrates?

J Struct Funct Genomics 2003 ;3(1-4):75-84

School of Animal & Microbial Sciences, The University of Reading, Whiteknights, PO Box 228, Reading RG6 6AJ, United Kingdom.

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July 2003

Dispersal of NK homeobox gene clusters in amphioxus and humans.

Proc Natl Acad Sci U S A 2003 Apr 18;100(9):5292-5. Epub 2003 Apr 18.

School of Animal and Microbial Sciences, University of Reading, Whiteknights, Reading RG6 6AJ, United Kingdom.

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http://dx.doi.org/10.1073/pnas.0836141100DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC154338PMC
April 2003

Ciona intestinalis ParaHox genes: evolution of Hox/ParaHox cluster integrity, developmental mode, and temporal colinearity.

Mol Phylogenet Evol 2002 Sep;24(3):412-7

School of Animal and Microbial Sciences, University of Reading, Whiteknights, Reading, RG6 6AJ, UK.

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September 2002

Ciona.

Curr Biol 2002 Sep;12(18):R609

School of Animal and Microbial Sciences, The University of Reading, Whiteknights, Reading, UK.

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http://dx.doi.org/10.1016/s0960-9822(02)01129-6DOI Listing
September 2002

An orphan PRD class homeobox gene expressed in mouse brain and limb development.

Dev Genes Evol 2002 Jul 24;212(6):293-7. Epub 2002 May 24.

School of Animal and Microbial Science, The University of Reading, Whiteknights, Reading, RG6 6AJ, UK.

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http://link.springer.com/content/pdf/10.1007/s00427-002-0244
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http://link.springer.com/10.1007/s00427-002-0244-1
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http://dx.doi.org/10.1007/s00427-002-0244-1DOI Listing
July 2002

Bayesian phylogenetic analysis supports monophyly of ambulacraria and of cyclostomes.

Zoolog Sci 2002 May;19(5):593-9

School of Animal and Microbial Sciences, The University of Reading, Whiteknoghts, UK.

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http://dx.doi.org/10.2108/zsj.19.593DOI Listing
May 2002

Were vertebrates octoploid?

Philos Trans R Soc Lond B Biol Sci 2002 Apr;357(1420):531-44

School of Animal and Microbial Sciences, The University of Reading, Whiteknights, Reading RG6 6AJ, UK.

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http://dx.doi.org/10.1098/rstb.2001.1035DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1692965PMC
April 2002