Peter Underhill

Peter Underhill

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Peter Underhill

Peter Underhill

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Y-chromosome phylogeographic analysis of the Greek-Cypriot population reveals elements consistent with Neolithic and Bronze Age settlements.

Investig Genet 2016 11;7. Epub 2016 Feb 11.

Molecular Medicine Research Center and Laboratory of Molecular and Medical Genetics, Department of Biological Sciences, University of Cyprus, Kallipoleos 75, 1678 Nicosia, Cyprus.

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http://dx.doi.org/10.1186/s13323-016-0032-8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4750176PMC
February 2016

A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Authors:
Monika Karmin Lauri Saag Mário Vicente Melissa A Wilson Sayres Mari Järve Ulvi Gerst Talas Siiri Rootsi Anne-Mai Ilumäe Reedik Mägi Mario Mitt Luca Pagani Tarmo Puurand Zuzana Faltyskova Florian Clemente Alexia Cardona Ene Metspalu Hovhannes Sahakyan Bayazit Yunusbayev Georgi Hudjashov Michael DeGiorgio Eva-Liis Loogväli Christina Eichstaedt Mikk Eelmets Gyaneshwer Chaubey Kristiina Tambets Sergei Litvinov Maru Mormina Yali Xue Qasim Ayub Grigor Zoraqi Thorfinn Sand Korneliussen Farida Akhatova Joseph Lachance Sarah Tishkoff Kuvat Momynaliev François-Xavier Ricaut Pradiptajati Kusuma Harilanto Razafindrazaka Denis Pierron Murray P Cox Gazi Nurun Nahar Sultana Rane Willerslev Craig Muller Michael Westaway David Lambert Vedrana Skaro Lejla Kovačevic Shahlo Turdikulova Dilbar Dalimova Rita Khusainova Natalya Trofimova Vita Akhmetova Irina Khidiyatova Daria V Lichman Jainagul Isakova Elvira Pocheshkhova Zhaxylyk Sabitov Nikolay A Barashkov Pagbajabyn Nymadawa Evelin Mihailov Joseph Wee Tien Seng Irina Evseeva Andrea Bamberg Migliano Syafiq Abdullah George Andriadze Dragan Primorac Lubov Atramentova Olga Utevska Levon Yepiskoposyan Damir Marjanovic Alena Kushniarevich Doron M Behar Christian Gilissen Lisenka Vissers Joris A Veltman Elena Balanovska Miroslava Derenko Boris Malyarchuk Andres Metspalu Sardana Fedorova Anders Eriksson Andrea Manica Fernando L Mendez Tatiana M Karafet Krishna R Veeramah Neil Bradman Michael F Hammer Ludmila P Osipova Oleg Balanovsky Elza K Khusnutdinova Knut Johnsen Maido Remm Mark G Thomas Chris Tyler-Smith Peter A Underhill Eske Willerslev Rasmus Nielsen Mait Metspalu Richard Villems Toomas Kivisild

Genome Res 2015 Apr 13;25(4):459-66. Epub 2015 Mar 13.

Estonian Biocentre, Tartu, 51010, Estonia; Division of Biological Anthropology, University of Cambridge, Cambridge, CB2 1QH, United Kingdom;

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https://bib.irb.hr/datoteka/715300.2015_Genome_Res._Karmin-A
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http://genome.cshlp.org/lookup/doi/10.1101/gr.186684.114
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http://dx.doi.org/10.1101/gr.186684.114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4381518PMC
April 2015

Afghanistan from a Y-chromosome perspective.

Eur J Hum Genet 2012 Oct 18;20(10):1063-70. Epub 2012 Apr 18.

Department of Molecular and Human Genetics, College of Medicine, Florida International University, Miami, FL 33199, USA.

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http://www.nature.com/doifinder/10.1038/ejhg.2012.59
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http://dx.doi.org/10.1038/ejhg.2012.59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3449065PMC
October 2012

Croatian national reference Y-STR haplotype database.

Mol Biol Rep 2012 Jul 6;39(7):7727-41. Epub 2012 Mar 6.

Forensic Science Centre Ivan Vučetić, Ministry of Interior, Ilica 335, 10000 Zagreb, Croatia.

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http://dx.doi.org/10.1007/s11033-012-1610-3DOI Listing
July 2012

Neolithic patrilineal signals indicate that the Armenian plateau was repopulated by agriculturalists.

Eur J Hum Genet 2012 Mar 16;20(3):313-20. Epub 2011 Nov 16.

Department of Molecular and Human Genetics, College of Medicine, Florida International University, Miami, FL 33199, USA.

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http://dx.doi.org/10.1038/ejhg.2011.192DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286660PMC
March 2012

MicroRNAs 296 and 298 are imprinted and part of the GNAS/Gnas cluster and miR-296 targets IKBKE and Tmed9.

RNA 2012 Jan 23;18(1):135-44. Epub 2011 Nov 23.

Mammalian Genetics Unit, MRC Harwell, Harwell Science and Innovation Centre, Oxfordshire, OX11 0RD, United Kingdom.

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http://dx.doi.org/10.1261/rna.029561.111DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3261735PMC
January 2012

Croatian genetic heritage: Y-chromosome story.

Croat Med J 2011 Jun;52(3):225-34

Dragan Primorac, University of Split School of Medicine, Soltanska 2, 21 000 Split, Croatia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3118711PMC
http://dx.doi.org/10.3325/cmj.2011.52.225DOI Listing
June 2011

Footprints of X-to-Y gene conversion in recent human evolution.

Mol Biol Evol 2010 Mar 6;27(3):714-25. Epub 2009 Oct 6.

Dipartimento di Genetica e Biologia Molecolare, Sapienza Università di Roma, Rome, Italy.

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http://dx.doi.org/10.1093/molbev/msp231DOI Listing
March 2010

Y chromosome diversity, human expansion, drift, and cultural evolution.

Proc Natl Acad Sci U S A 2009 Dec 17;106(48):20174-9. Epub 2009 Nov 17.

Unité Mixte de Recherche 6578, Centre National de Recherche Scientifique, and Etablissement Français du Sang, Biocultural Anthropology, Medical Faculty,Université de Méditerranée, 13916 Marseille, France.

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http://dx.doi.org/10.1073/pnas.0910803106DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2787129PMC
December 2009

Y-chromosome distribution within the geo-linguistic landscape of northwestern Russia.

Eur J Hum Genet 2009 Oct 4;17(10):1260-73. Epub 2009 Mar 4.

Department of Molecular and Human Genetics, College of Medicine, Florida International University, Miami, FL 33199, USA.

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http://www.nature.com/articles/ejhg20096
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http://dx.doi.org/10.1038/ejhg.2009.6DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2986641PMC
October 2009

Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions.

BMC Genet 2009 Sep 22;10:59. Epub 2009 Sep 22.

Molecular Genetics Laboratory, College of Medicine, King Saud University, Riyadh 11411, Saudi Arabia.

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http://dx.doi.org/10.1186/1471-2156-10-59DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759955PMC
September 2009

Using DNA microarrays.

Methods Mol Biol 2008 ;461:605-29

MRC Mammalian Genetics Unit, Harwell, UK.

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http://dx.doi.org/10.1007/978-1-60327-483-8_41DOI Listing
January 2009

Y-chromosome variation among Sudanese: restricted gene flow, concordance with language, geography, and history.

Am J Phys Anthropol 2008 Nov;137(3):316-23

Institute of Endemic Diseases, University of Khartoum, Sudan.

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http://dx.doi.org/10.1002/ajpa.20876DOI Listing
November 2008

Use of y chromosome and mitochondrial DNA population structure in tracing human migrations.

Annu Rev Genet 2007 ;41:539-64

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120, USA.

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http://dx.doi.org/10.1146/annurev.genet.41.110306.130407DOI Listing
May 2008

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree.

Genome Res 2008 May 2;18(5):830-8. Epub 2008 Apr 2.

ARL Division of Biotechnology, University of Arizona, Tucson, Arizona 85721, USA.

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http://dx.doi.org/10.1101/gr.7172008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2336805PMC
May 2008

Y-chromosome diversity characterizes the Gulf of Oman.

Eur J Hum Genet 2008 Mar 10;16(3):374-86. Epub 2007 Oct 10.

Department of Biological Sciences, Florida International University, Miami, FL 33199, USA.

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http://dx.doi.org/10.1038/sj.ejhg.5201934DOI Listing
March 2008

Co-introgression of Y-chromosome haplogroups and the sickle cell gene across Africa's Sahel.

Eur J Hum Genet 2007 Nov 15;15(11):1183-5. Epub 2007 Aug 15.

Institute of Endemic Diseases, Medical Campus, University of Khartoum, Khartoum, Sudan.

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http://dx.doi.org/10.1038/sj.ejhg.5201892DOI Listing
November 2007

The Himalayas as a directional barrier to gene flow.

Am J Hum Genet 2007 May 4;80(5):884-94. Epub 2007 Apr 4.

Department of Biological Sciences, Florida International University, Miami, FL 33199, USA.

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http://dx.doi.org/10.1086/516757DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1852741PMC
May 2007

Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis.

Proc Natl Acad Sci U S A 2007 May 11;104(21):8726-30. Epub 2007 May 11.

Estonian Biocentre and Tartu University, Department of Evolutionary Biology, Riia 23, 51010 Tartu, Estonia.

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http://dx.doi.org/10.1073/pnas.0702928104DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1885570PMC
May 2007

Paleolithic Y-haplogroup heritage predominates in a Cretan highland plateau.

Eur J Hum Genet 2007 Apr 31;15(4):485-93. Epub 2007 Jan 31.

Department of Biological Sciences, Florida International University, Miami, FL 33199, USA.

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http://dx.doi.org/10.1038/sj.ejhg.5201769DOI Listing
April 2007

Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan.

Eur J Hum Genet 2007 Jan 18;15(1):121-6. Epub 2006 Oct 18.

Biomedical and Genetic Engineering Division, Dr. AQ Khan Research Laboratories, Islamabad, Pakistan.

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http://dx.doi.org/10.1038/sj.ejhg.5201726DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2588664PMC
January 2007

Difference between evolutionarily effective and germ line mutation rate due to stochastically varying haplogroup size.

Mol Biol Evol 2006 Dec 6;23(12):2268-70. Epub 2006 Sep 6.

N.I. Vavilov Institute of General Genetics, Russian Academy of Sciences, Moscow, Russia.

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https://academic.oup.com/mbe/article-lookup/doi/10.1093/molb
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http://dx.doi.org/10.1093/molbev/msl105DOI Listing
December 2006

Detection of novel Y SNPs provides further insights into Y chromosomal variation in Pakistan.

J Hum Genet 2006 10;51(4):375-378. Epub 2006 Feb 10.

Biomedical and Genetic Engineering Laboratories, G. P. O Box 2891, 44000, Islamabad, Pakistan.

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http://dx.doi.org/10.1007/s10038-005-0357-2DOI Listing
May 2006

DNA mutation detection using denaturing high-performance liquid chromatography (DHPLC).

Curr Protoc Hum Genet 2006 Feb;Chapter 7:Unit7.10

Department of Molecular and Clinical Genetics, Central Clinical School and SUPAMAC The University of Sydney, New South Wales, Australia.

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http://doi.wiley.com/10.1002/0471142905.hg0710s48
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http://dx.doi.org/10.1002/0471142905.hg0710s48DOI Listing
February 2006

Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122.

Am J Hum Genet 2005 Sep 14;77(3):408-19. Epub 2005 Jul 14.

Key Laboratory of Cellular and Molecular Evolution, Kunming Institute of Zoology, Kunming, China.

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http://dx.doi.org/10.1086/444436DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1226206PMC
September 2005

Regulation of hepatic metabolic pathways by the orphan nuclear receptor SHP.

EMBO J 2005 Jul 23;24(14):2624-33. Epub 2005 Jun 23.

Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas, Herakleion Crete, Greece.

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http://dx.doi.org/10.1038/sj.emboj.7600728DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1176456PMC
July 2005

Evidence of admixture from haplotyping in an epidemiological study of UK Caucasian males: implications for association analyses.

Hum Hered 2004 ;57(3):142-55

Human Genetics Division, School of Medicine, University of Southampton, Southampton General Hospital, England.

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https://www.karger.com/Article/FullText/79245
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http://dx.doi.org/10.1159/000079245DOI Listing
February 2005

Excavating Y-chromosome haplotype strata in Anatolia.

Hum Genet 2004 Jan 29;114(2):127-48. Epub 2003 Oct 29.

Department of Genetics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA 94305-5120, USA.

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http://dx.doi.org/10.1007/s00439-003-1031-4DOI Listing
January 2004

Immunology: hepatitis A virus link to atopic disease.

Nature 2003 Oct;425(6958):576

Division of Immunology and Allergy, Department of Pediatrics, Stanford University, Stanford, California 94305-5208, USA.

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http://dx.doi.org/10.1038/425576aDOI Listing
October 2003

African Y chromosome and mtDNA divergence provides insight into the history of click languages.

Curr Biol 2003 Mar;13(6):464-73

Department of Anthropological Sciences, Stanford University, Stanford, CA 94305, USA.

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http://dx.doi.org/10.1016/s0960-9822(03)00130-1DOI Listing
March 2003

Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea.

Am J Hum Genet 2003 Feb 16;72(2):281-302. Epub 2002 Jan 16.

Department for Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany.

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http://dx.doi.org/10.1086/346065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC379223PMC
February 2003

Genetic affinities of the Andaman Islanders, a vanishing human population.

Curr Biol 2003 Jan;13(2):86-93

Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, 440 006, Nagpur, India.

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http://dx.doi.org/10.1016/s0960-9822(02)01336-2DOI Listing
January 2003

Different genetic components in the Norwegian population revealed by the analysis of mtDNA and Y chromosome polymorphisms.

Eur J Hum Genet 2002 Sep;10(9):521-9

Dipartimento di Biologia Cellulare, Università della Calabria, Ponte Pietro Bucci c/da Arcavacata, 87030 Rende, Italy.

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http://dx.doi.org/10.1038/sj.ejhg.5200834DOI Listing
September 2002

Ethiopians and Khoisan share the deepest clades of the human Y-chromosome phylogeny.

Am J Hum Genet 2002 Jan 20;70(1):265-8. Epub 2001 Nov 20.

Dipartimento di Genetica e Microbiologia, Università di Pavia, Pavia, Italy.

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http://dx.doi.org/10.1086/338306DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC384897PMC
January 2002

The dual origin and Siberian affinities of Native American Y chromosomes.

Am J Hum Genet 2002 Jan 30;70(1):192-206. Epub 2001 Nov 30.

Center for Molecular Medicine, Emory University School of Medicine, Atlanta, GA 30322, USA.

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http://dx.doi.org/10.1086/338457DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC384887PMC
January 2002