Publications by authors named "Peter Tarczy-Hornoch"

76Publications

Personalized Medicine Implementation with Non-traditional Data Sources: A Conceptual Framework and Survey of the Literature.

Yearb Med Inform 2019 Aug 16;28(1):181-189. Epub 2019 Aug 16.

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1055/s-0039-1677916DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6697507PMC
August 2019

The Feelings About genomiC Testing Results (FACToR) Questionnaire: Development and Preliminary Validation.

J Genet Couns 2019 04 14;28(2):477-490. Epub 2018 Dec 14.

Department of Health Services, School of Public Health, University of Washington, Box 357660, Seattle, WA, 98195-7660, USA.

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http://dx.doi.org/10.1007/s10897-018-0286-9DOI Listing
April 2019

Sustainability considerations for clinical and translational research informatics infrastructure.

J Clin Transl Sci 2018 Oct 5;2(5):267-275. Epub 2018 Dec 5.

Department of Preventive Medicine, Division of Health and Biomedical Informatics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.

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http://dx.doi.org/10.1017/cts.2018.332DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6390401PMC
October 2018

Identifying Patients Who Are Likely to Receive Most of Their Care From a Specific Health Care System: Demonstration via Secondary Analysis.

JMIR Med Inform 2018 Nov 5;6(4):e12241. Epub 2018 Nov 5.

Population Health Analytics, University of Washington Medicine Finance, University of Washington, Seattle, WA, United States.

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http://medinform.jmir.org/2018/4/e12241/
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http://dx.doi.org/10.2196/12241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6246965PMC
November 2018

Design Recommendations for Pharmacogenomics Clinical Decision Support Systems.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:237-246. Epub 2017 Jul 26.

University of Washington, Seattle, WA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543362PMC
July 2017

A Knowledge-based System for Intelligent Support in Pharmacogenomics Evidence Assessment: Ontology-driven Evidence Representation and Retrieval.

AMIA Jt Summits Transl Sci Proc 2017 26;2017:175-184. Epub 2017 Jul 26.

Department of Biomedical Informatics and Medical Education, Seattle, WA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5543390PMC
July 2017

Practical considerations for implementing genomic information resources. Experiences from eMERGE and CSER.

Appl Clin Inform 2016 09 21;7(3):870-82. Epub 2016 Sep 21.

Luke Rasmussen, Division of Health and Biomedical Informatics, Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, 750 North Lake Shore Drive, 11th Floor, Rubloff Building, Chicago, IL 60611, Phone: 312-503-2823.

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http://dx.doi.org/10.4338/ACI-2016-04-RA-0060DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5052555PMC
September 2016

Modeling the costs of clinical decision support for genomic precision medicine.

AMIA Jt Summits Transl Sci Proc 2016 20;2016:60-4. Epub 2016 Jul 20.

Department of Laboratory Medicine.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001767PMC
August 2016

Physician perspectives of CYP2C19 and clopidogrel drug-gene interaction active clinical decision support alerts.

Int J Med Inform 2016 Feb 11;86:117-25. Epub 2015 Nov 11.

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA; Department of Pediatrics, University of Washington, Seattle, WA, USA; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1016/j.ijmedinf.2015.11.004DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704682PMC
February 2016

Characterizing Secondary Use of Clinical Data.

AMIA Jt Summits Transl Sci Proc 2015 25;2015:92-6. Epub 2015 Mar 25.

Institute of Translational Health Sciences, University of Washington, Seattle, WA ; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA ; Department of Pediatrics, University of Washington, Seattle, WA ; Department of Computer Science and Engineering, University of Washington, Seattle, WA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4525245PMC
August 2015

Pragmatic and Ethical Challenges of Incorporating the Genome into the Electronic Medical Record.

Curr Genet Med Rep 2014 Dec;2(4):201-211

Department of Laboratory Medicine, University of Washington.

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http://dx.doi.org/10.1007/s40142-014-0051-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489153PMC
December 2014

CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record.

J Am Med Inform Assoc 2015 Nov 3;22(6):1231-42. Epub 2015 Jul 3.

Genome Medicine Institute, Geisinger Medical Center, Danville, PA, USA Department of Medicine, Program for Personalized and Genomic Medicine and Center for Health-Related Informatics and Bioimaging, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://dx.doi.org/10.1093/jamia/ocv065DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5009914PMC
November 2015

Making pharmacogenomic-based prescribing alerts more effective: A scenario-based pilot study with physicians.

J Biomed Inform 2015 Jun 7;55:249-59. Epub 2015 May 7.

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, United States; Department of Pediatrics, University of Washington, Seattle, WA, United States; Department of Computer Science & Engineering, University of Washington, Seattle, WA, United States.

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https://linkinghub.elsevier.com/retrieve/pii/S15320464150007
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http://dx.doi.org/10.1016/j.jbi.2015.04.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4704108PMC
June 2015

Development of clinical decision support alerts for pharmacogenomic incidental findings from exome sequencing.

Genet Med 2015 Nov 5;17(11):939-42. Epub 2015 Mar 5.

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/gim.2015.5DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4976082PMC
November 2015

Usability evaluation of pharmacogenomics clinical decision support aids and clinical knowledge resources in a computerized provider order entry system: a mixed methods approach.

Int J Med Inform 2014 Jul 9;83(7):473-83. Epub 2014 May 9.

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, United States; Department of Pediatrics, Division of Neonatology, University of Washington, Seattle, WA, United States; Department of Computer Science and Engineering, University of Washington, Seattle, WA, United States.

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http://dx.doi.org/10.1016/j.ijmedinf.2014.04.008DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4095746PMC
July 2014

Biotrust: a comprehensive system for acquiring and distributing biospecimens.

AMIA Jt Summits Transl Sci Proc 2013 18;2013. Epub 2013 Mar 18.

Department of Biomedical Informatics and Medical Education, Seattle, WA ; Institute of Translational Health Sciences, Seattle, WA.

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December 2013

A survey of informatics approaches to whole-exome and whole-genome clinical reporting in the electronic health record.

Genet Med 2013 Oct 26;15(10):824-32. Epub 2013 Sep 26.

1] National Institutes of Health National Human Genome Research Institute Clinical Sequencing Exploratory Research Electronic Medical Records Working Group, Bethesda, Maryland, USA [2] University of Washington, Seattle, Washington, USA.

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http://dx.doi.org/10.1038/gim.2013.120DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3951437PMC
October 2013

Opportunities for genomic clinical decision support interventions.

Genet Med 2013 Oct 19;15(10):817-23. Epub 2013 Sep 19.

1] Department of Biomedical Informatics, Columbia University, New York, New York, USA [2] Program for Personalized & Genomic Medicine and Center for Health-Related Informatics and Bioimaging, University of Maryland School of Medicine, Baltimore, Maryland, USA.

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http://dx.doi.org/10.1038/gim.2013.128DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3858176PMC
October 2013

Personalized medicine: challenges and opportunities for translational bioinformatics.

Per Med 2013 Jul;10(5):453-462

Program in Personalized & Genomic Medicine and Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3770190PMC
http://dx.doi.org/10.2217/pme.13.30DOI Listing
July 2013

Developing a prototype system for integrating pharmacogenomics findings into clinical practice.

J Pers Med 2012 Nov;2(4):241-56

Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA 98195, USA ; Department of Biomedical Informatics, Columbia University, New York, NY 10032, USA.

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http://dx.doi.org/10.3390/jpm2040241DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3670105PMC
November 2012

Learning virulent proteins from integrated query networks.

BMC Bioinformatics 2012 Dec 2;13:321. Epub 2012 Dec 2.

Ayasdi Inc, Palo Alto, CA 94301, USA.

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http://dx.doi.org/10.1186/1471-2105-13-321DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3560104PMC
December 2012

Neonatal Informatics: Transforming Neonatal Care Through Translational Bioinformatics.

Neoreviews 2012 May;13(5):e281-e284

Division of Neonatal and Developmental Medicine, Department of Pediatrics, Stanford University School of Medicine, Stanford, CA.

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http://dx.doi.org/10.1542/neo.13-5-e281DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3424284PMC
May 2012

LC Data QUEST: A Technical Architecture for Community Federated Clinical Data Sharing.

AMIA Jt Summits Transl Sci Proc 2012 19;2012:57-62. Epub 2012 Mar 19.

Institute of Translational Health Sciences, University of Washington, Seattle, WA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392065PMC
August 2012

Deriving rules and assertions from pharmacogenomics knowledge resources in support of patient drug metabolism efficacy predictions.

J Am Med Inform Assoc 2012 Sep-Oct;19(5):840-50. Epub 2012 Apr 26.

Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, Washington, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000405DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3422817PMC
January 2013

Implementation of a deidentified federated data network for population-based cohort discovery.

J Am Med Inform Assoc 2012 Jun 26;19(e1):e60-7. Epub 2011 Aug 26.

Department of Biomedical Health Informatics, University of Washington, Seattle, Washington 98109, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000133DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392860PMC
June 2012

Translational bioinformatics: linking knowledge across biological and clinical realms.

J Am Med Inform Assoc 2011 Jul-Aug;18(4):354-7. Epub 2011 May 10.

Center for Clinical and Translational Science, University of Vermont, Burlington, Vermont 05405, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000245DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3128415PMC
November 2011

Prescriber and staff perceptions of an electronic prescribing system in primary care: a qualitative assessment.

BMC Med Inform Decis Mak 2010 Nov 19;10:72. Epub 2010 Nov 19.

Pharmaceutical Outcomes Research and Policy Program, University of Washington, Seattle, WA 98195-7630, USA.

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http://dx.doi.org/10.1186/1472-6947-10-72DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996338PMC
November 2010

Selected proceedings of the 2010 Summit on Translational Bioinformatics.

BMC Bioinformatics 2010 Oct 28;11 Suppl 9:S1. Epub 2010 Oct 28.

Department of Pediatrics and Computation Institute, The University of Chicago, Chicago, IL, USA.

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http://dx.doi.org/10.1186/1471-2105-11-S9-S1DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967739PMC
October 2010

Feasibility of incorporating genomic knowledge into electronic medical records for pharmacogenomic clinical decision support.

BMC Bioinformatics 2010 Oct 28;11 Suppl 9:S10. Epub 2010 Oct 28.

Department of Medical Education & Biomedical Informatics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1186/1471-2105-11-S9-S10DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967740PMC
October 2010

Supporting retrieval of diverse biomedical data using evidence-aware queries.

J Biomed Inform 2010 Dec 17;43(6):873-82. Epub 2010 Jul 17.

Department of Medical Education and Biomedical Informatics, University of Washington, 1959 NE Pacific St., HSB I-264, Seattle, WA 98195-7240, USA.

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http://dx.doi.org/10.1016/j.jbi.2010.07.005DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3059407PMC
December 2010

Participatory (re)design of a sociotechnical healthcare delivery system: the Group Health Patient-Centered Medical Home.

Stud Health Technol Inform 2010 ;157:59-65

University of Washington School of Medicine, Seattle, Washington, USA.

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September 2010

Evaluation of probabilistic and logical inference for a SNP annotation system.

J Biomed Inform 2010 Jun 14;43(3):407-18. Epub 2009 Dec 14.

Department of Biomedical and Health Informatics, University of Washington, Seattle, WA 98195-7240, USA.

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http://dx.doi.org/10.1016/j.jbi.2009.12.002DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2878960PMC
June 2010

The potential for automated question answering in the context of genomic medicine: an assessment of existing resources and properties of answers.

BMC Bioinformatics 2009 Sep 17;10 Suppl 9:S8. Epub 2009 Sep 17.

Department of Medical Education & Biomedical Informatics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1186/1471-2105-10-S9-S8DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745695PMC
September 2009

Evaluating the accuracy of a functional SNP annotation system.

BMC Bioinformatics 2009 Sep 17;10 Suppl 9:S11. Epub 2009 Sep 17.

Departments of Biomedical & Health Informatics, University of Washington, Seattle, WA, USA.

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http://dx.doi.org/10.1186/1471-2105-10-S9-S11DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745682PMC
September 2009

SNPit: a federated data integration system for the purpose of functional SNP annotation.

Comput Methods Programs Biomed 2009 Aug 26;95(2):181-9. Epub 2009 Mar 26.

Department of Biomedical & Health Informatics, University of Washington, Seattle, WA 98195-7240, USA.

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http://dx.doi.org/10.1016/j.cmpb.2009.02.010DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2680224PMC
August 2009

The potential for automated question answering in the context of genomic medicine: An assessment of existing resources and properties of answers.

Summit Transl Bioinform 2009 Mar 1;2009:1-25. Epub 2009 Mar 1.

Department of Medical Education & Biomedical Informatics, University of Washington, Seattle, WA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3041571PMC
March 2009

Natural language processing of clinical trial announcements: exploratory-study of building an automated screening application.

AMIA Annu Symp Proc 2008 Nov 6:1142. Epub 2008 Nov 6.

University of Washington, Seattle, WA, USA.

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November 2008

Concept mapping to develop a framework for characterizing Electronic Data Capture (EDC) Systems.

AMIA Annu Symp Proc 2008 Nov 6:960. Epub 2008 Nov 6.

Division of Biomedical & Health Informatics and Institute for Translational Health Sciences, University of Washington, Seattle, WA, USA.

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November 2008

Learning pathogenic proteins across fractured and heterogeneous data.

AMIA Annu Symp Proc 2008 Nov 6:889. Epub 2008 Nov 6.

Biomedical Informatics, University of Washington, Seattle, WA, USA.

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November 2008

Incorporating collaboratory concepts into informatics in support of translational interdisciplinary biomedical research.

Int J Med Inform 2009 Jan 15;78(1):10-21. Epub 2008 Aug 15.

Division of Biomedical and Health Informatics, Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, WA 98195-7420, USA.

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http://dx.doi.org/10.1016/j.ijmedinf.2008.06.011DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2606933PMC
January 2009

Validating annotations for uncharacterized proteins in Shewanella oneidensis.

OMICS 2008 Sep;12(3):211-5

Department of Medical Education and Biomedical Informatics, Division of Biomedical and Health Informatics, University of Washington, Seattle, Washington 98101-1304, USA.

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http://dx.doi.org/10.1089/omi.2008.0051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3189009PMC
September 2008

People and organizational issues in research systems implementation.

J Am Med Inform Assoc 2008 May-Jun;15(3):283-9. Epub 2008 Feb 28.

Department of Medical Informatics and Clinical Epidemiology, School of Medicine, Oregon Health & Science University, 3181 SW Sam Jackson Park Road, Portland, OR 97239-3098, USA.

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http://dx.doi.org/10.1197/jamia.M2582DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2410012PMC
June 2008

Biomediator data integration and inference for functional annotation of anonymous sequences.

Pac Symp Biocomput 2007 :343-54

Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, WA, USA.

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December 2007

Issues in biomedical research data management and analysis: needs and barriers.

J Am Med Inform Assoc 2007 Jul-Aug;14(4):478-88. Epub 2007 Apr 25.

University of Washington, Department of Medical Education and Biomedical Informatics, Box 357240, Seattle, WA 98195-7420, USA.

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http://dx.doi.org/10.1197/jamia.M2114DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244904PMC
July 2007

A qualitative study of the implementation of a bioinformatics tool in a biological research laboratory.

Int J Med Inform 2007 Nov-Dec;76(11-12):821-8. Epub 2006 Nov 3.

Department of Biomedical and Health Informatics, University of Washington, P.O. Box 357240, Seattle, WA 98195-7240, United States.

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http://dx.doi.org/10.1016/j.ijmedinf.2006.09.022DOI Listing
February 2008

The University of Washington Health Sciences Library BioCommons: an evolving Northwest biomedical research information support infrastructure.

J Med Libr Assoc 2006 Jul;94(3):321-9

Health Sciences Libraries and Information Center and Department of Biomedical and Health Informatics, University of Washington, Seattle, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1525310PMC
July 2006

On the persistence of supplementary resources in biomedical publications.

BMC Bioinformatics 2006 May 19;7:260. Epub 2006 May 19.

Division of Biomedical Health Informatics, University of Washington, USA.

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http://dx.doi.org/10.1186/1471-2105-7-260DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1481620PMC
May 2006

Data integration and genomic medicine.

J Biomed Inform 2007 Feb 9;40(1):5-16. Epub 2006 Mar 9.

Department of Medical Education and Biomedical Informatics, University of Washington, Seattle, USA.

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http://dx.doi.org/10.1016/j.jbi.2006.02.007DOI Listing
February 2007

The BioMediator system as a data integration tool to answer diverse biologic queries.

Stud Health Technol Inform 2004 ;107(Pt 2):768-72

University of Washington, Seattle, WA 98195-7240, USA.

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June 2005

Incorporating ideas from computer-supported cooperative work.

J Biomed Inform 2004 Apr;37(2):128-37

School of Management and Information Systems, University of Missouri, Rolla, MO, USA.

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http://dx.doi.org/10.1016/j.jbi.2004.04.001DOI Listing
April 2004

The effect of point-of-care personal digital assistant use on resident documentation discrepancies.

Pediatrics 2004 Mar;113(3 Pt 1):450-4

Children's Health Services Research, Indiana University School of Medicine, Indianapolis, Indiana 46202, USA.

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http://dx.doi.org/10.1542/peds.113.3.450DOI Listing
March 2004

Resident documentation discrepancies in a neonatal intensive care unit.

Pediatrics 2003 May;111(5 Pt 1):976-80

Robert Wood Johnson Clinical Scholars Program, University of Washington, Seattle, Washington 98195-7183, USA.

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http://dx.doi.org/10.1542/peds.111.5.976DOI Listing
May 2003

The implementation of a Personal Digital Assistant (PDA) based patient record and charting system: lessons learned.

Proc AMIA Symp 2002 :111-5

Robert Wood Johnson Clinical Scholars Program, University of Washington, Seattle, WA, USA.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2244531PMC
April 2003

Consumer health information on the Internet.

J Am Med Inform Assoc 2002 Jul-Aug;9(4):402-3; author reply 403-5

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC346627PMC
http://dx.doi.org/10.1197/jamia.m1114DOI Listing
August 2002