Publications by authors named "Peter McGarvey"

21Publications

UniProt genomic mapping for deciphering functional effects of missense variants.

Hum Mutat 2019 06 3;40(6):694-705. Epub 2019 Apr 3.

Protein Information Resource, Georgetown Medical Center, Washington, DC.

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June 2019

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.

Database (Oxford) 2018 01 1;2018. Epub 2018 Jan 1.

Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA.

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January 2018

eGARD: Extracting associations between genomic anomalies and drug responses from text.

PLoS One 2017 20;12(12):e0189663. Epub 2017 Dec 20.

Department of Computer and Information Science, University of Delaware, Newark, Delaware, United States of America.

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January 2018

Computational clustering for viral reference proteomes.

Bioinformatics 2016 07 26;32(13):2041-3. Epub 2016 Feb 26.

Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA Protein Information Resource, Georgetown University Medical Center, Washington, DC 20007, USA.

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July 2016

Distinct lymphocyte antigens 6 (Ly6) family members Ly6D, Ly6E, Ly6K and Ly6H drive tumorigenesis and clinical outcome.

Oncotarget 2016 Mar;7(10):11165-93

Innovation Center for Biomedical Informatics (ICBI), Georgetown University Medical Center, Washington, District of Columbia 20007, United States of America.

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March 2016

Protein networks in induced sputum from smokers and COPD patients.

Int J Chron Obstruct Pulmon Dis 2015 15;10:1957-75. Epub 2015 Sep 15.

Lazzaro Spallanzani Department of Biology and Biotechnology, University of Pavia, Pavia, Italy.

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July 2016

The CPTAC Data Portal: A Resource for Cancer Proteomics Research.

J Proteome Res 2015 Jun 4;14(6):2707-13. Epub 2015 May 4.

‡ESAC, Inc., Rockville, Maryland 20850, United States.

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June 2015

In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases.

BMC Immunol 2014 Dec 9;15:61. Epub 2014 Dec 9.

Innovation Center for Biomedical Informatics, Georgetown University Medical Center, 2115 Wisconsin Ave NW, Suite 110, Washington, DC, 20007, USA.

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December 2014

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

Bioinformatics 2015 Mar 13;31(6):926-32. Epub 2014 Nov 13.

Protein Information Resource, Georgetown University Medical Center, Washington, DC 20007, USA, Department of Computer Engineering, Muğla Sıtkı Koçman University, Muğla 48000, Turkey, Center for Bioinformatics and Computational Biology and Protein Information Resource, University of Delaware, Newark, DE 19711, USA, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland Protein Information Resource, Georgetown University Medical Center, Washington, DC 20007, USA, Department of Computer Engineering, Muğla Sıtkı Koçman University, Muğla 48000, Turkey, Center for Bioinformatics and Computational Biology and Protein Information Resource, University of Delaware, Newark, DE 19711, USA, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland.

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March 2015

Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries.

J Am Med Inform Assoc 2012 Jun 9;19(e1):e125-8. Epub 2012 Feb 9.

Clinical Research Informatics, Lombardi Cancer Center, Georgetown University Medical Center, Washington, DC, USA.

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June 2012

A comprehensive protein-centric ID mapping service for molecular data integration.

Bioinformatics 2011 Apr;27(8):1190-1

Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.

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April 2011

Protein-centric data integration for functional analysis of comparative proteomics data.

Methods Mol Biol 2011 ;694:323-39

Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, USA.

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February 2011

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.

Adv Bioinformatics 2010 29:423589. Epub 2010 Mar 29.

Department of Computer & Information Sciences, Center for Bioinformatics & Computational Biology, University of Delaware, Newark, DE 19711, USA.

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July 2011

Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets.

PLoS One 2009 Sep 25;4(9):e7162. Epub 2009 Sep 25.

Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America.

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September 2009

Infrastructure for the life sciences: design and implementation of the UniProt website.

BMC Bioinformatics 2009 May 8;10:136. Epub 2009 May 8.

Swiss-Prot Group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, 1211 Geneva 4, Switzerland.

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May 2009