Peter McGarvey

Peter McGarvey

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Peter McGarvey

Peter McGarvey

Publications by authors named "Peter McGarvey"

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19Publications

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UniProt genomic mapping for deciphering functional effects of missense variants.

Hum Mutat 2019 Jun 3;40(6):694-705. Epub 2019 Apr 3.

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, United Kingdom.

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http://doi.wiley.com/10.1002/humu.23738
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http://dx.doi.org/10.1002/humu.23738DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563471PMC
June 2019

eGARD: Extracting associations between genomic anomalies and drug responses from text.

PLoS One 2017 20;12(12):e0189663. Epub 2017 Dec 20.

Department of Computer and Information Science, University of Delaware, Newark, Delaware, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0189663PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5738129PMC
January 2018

Protein networks in induced sputum from smokers and COPD patients.

Int J Chron Obstruct Pulmon Dis 2015 15;10:1957-75. Epub 2015 Sep 15.

Lazzaro Spallanzani Department of Biology and Biotechnology, University of Pavia, Pavia, Italy.

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http://dx.doi.org/10.2147/COPD.S75978DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4576903PMC
July 2016

Computational clustering for viral reference proteomes.

Bioinformatics 2016 07 26;32(13):2041-3. Epub 2016 Feb 26.

Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA Protein Information Resource, Georgetown University Medical Center, Washington, DC 20007, USA.

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http://dx.doi.org/10.1093/bioinformatics/btw110DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4920120PMC
July 2016

Distinct lymphocyte antigens 6 (Ly6) family members Ly6D, Ly6E, Ly6K and Ly6H drive tumorigenesis and clinical outcome.

Oncotarget 2016 Mar;7(10):11165-93

Innovation Center for Biomedical Informatics (ICBI), Georgetown University Medical Center, Washington, District of Columbia 20007, United States of America.

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http://dx.doi.org/10.18632/oncotarget.7163DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4905465PMC
March 2016

The CPTAC Data Portal: A Resource for Cancer Proteomics Research.

J Proteome Res 2015 Jun 4;14(6):2707-13. Epub 2015 May 4.

‡ESAC, Inc., Rockville, Maryland 20850, United States.

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http://pubs.acs.org/doi/10.1021/pr501254j
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http://dx.doi.org/10.1021/pr501254jDOI Listing
June 2015

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.

Bioinformatics 2015 Mar 13;31(6):926-32. Epub 2014 Nov 13.

Protein Information Resource, Georgetown University Medical Center, Washington, DC 20007, USA, Department of Computer Engineering, Muğla Sıtkı Koçman University, Muğla 48000, Turkey, Center for Bioinformatics and Computational Biology and Protein Information Resource, University of Delaware, Newark, DE 19711, USA, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland Protein Information Resource, Georgetown University Medical Center, Washington, DC 20007, USA, Department of Computer Engineering, Muğla Sıtkı Koçman University, Muğla 48000, Turkey, Center for Bioinformatics and Computational Biology and Protein Information Resource, University of Delaware, Newark, DE 19711, USA, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK and Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1093/bioinformatics/btu739DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4375400PMC
March 2015

In silico analysis of autoimmune diseases and genetic relationships to vaccination against infectious diseases.

BMC Immunol 2014 Dec 9;15:61. Epub 2014 Dec 9.

Innovation Center for Biomedical Informatics, Georgetown University Medical Center, 2115 Wisconsin Ave NW, Suite 110, Washington, DC, 20007, USA.

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http://dx.doi.org/10.1186/s12865-014-0061-0DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4266212PMC
December 2014

Informatics and data quality at collaborative multicenter Breast and Colon Cancer Family Registries.

J Am Med Inform Assoc 2012 Jun 9;19(e1):e125-8. Epub 2012 Feb 9.

Clinical Research Informatics, Lombardi Cancer Center, Georgetown University Medical Center, Washington, DC, USA.

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http://dx.doi.org/10.1136/amiajnl-2011-000546DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392863PMC
June 2012

Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.

Adv Bioinformatics 2010 29:423589. Epub 2010 Mar 29.

Department of Computer & Information Sciences, Center for Bioinformatics & Computational Biology, University of Delaware, Newark, DE 19711, USA.

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http://www.hindawi.com/journals/abi/aip/423589.pdf
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http://www.hindawi.com/journals/abi/2010/423589/
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http://dx.doi.org/10.1155/2010/423589DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2847380PMC
July 2011

A comprehensive protein-centric ID mapping service for molecular data integration.

Bioinformatics 2011 Apr;27(8):1190-1

Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.

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http://dx.doi.org/10.1093/bioinformatics/btr101DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072559PMC
April 2011

Protein-centric data integration for functional analysis of comparative proteomics data.

Methods Mol Biol 2011 ;694:323-39

Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, USA.

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http://dx.doi.org/10.1007/978-1-60761-977-2_20DOI Listing
February 2011

Systems integration of biodefense omics data for analysis of pathogen-host interactions and identification of potential targets.

PLoS One 2009 Sep 25;4(9):e7162. Epub 2009 Sep 25.

Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC, United States of America.

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http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0007162PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2745575PMC
September 2009

Infrastructure for the life sciences: design and implementation of the UniProt website.

BMC Bioinformatics 2009 May 8;10:136. Epub 2009 May 8.

Swiss-Prot Group, Swiss Institute of Bioinformatics, CMU, 1 Michel Servet, 1211 Geneva 4, Switzerland.

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http://dx.doi.org/10.1186/1471-2105-10-136DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2686714PMC
May 2009

UniRef: comprehensive and non-redundant UniProt reference clusters.

Bioinformatics 2007 May 22;23(10):1282-8. Epub 2007 Mar 22.

Protein Information Resource, Department of Biochemistry and Molecular & Cellular Biology, Georgetown University Medical Center, Washington, DC 20007, USA.

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http://dx.doi.org/10.1093/bioinformatics/btm098DOI Listing
May 2007