Peter J Tonellato

Peter J Tonellato

UNVERIFIED PROFILE

Are you Peter J Tonellato?   Register this Author

Register author
Peter J Tonellato

Peter J Tonellato

Publications by authors named "Peter J Tonellato"

Are you Peter J Tonellato?   Register this Author

41Publications

692Reads

34Profile Views

Using simulation and optimization approach to improve outcome through warfarin precision treatment.

Pac Symp Biocomput 2018 ;23:412-423

School of Nursing & Institute for Health Informatics University of Minnesota, Minneapolis, MN, USA,

View Article

Download full-text PDF

Source
August 2018

Personalized long-term prediction of cognitive function: Using sequential assessments to improve model performance.

J Biomed Inform 2017 Dec 10;76:78-86. Epub 2017 Nov 10.

School of Public Health, University of Wisconsin-Milwaukee, Milwaukee, WI, USA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jbi.2017.11.002DOI Listing
December 2017

Personalized Anticoagulation: Optimizing Warfarin Management Using Genetics and Simulated Clinical Trials.

Circ Cardiovasc Genet 2017 Dec;10(6)

From the Aurora Research Institute, Aurora Health Care, Milwaukee, WI (K.R., J.A.W.); Brigham and Women's Hospital, Harvard Medical School, Boston, MA (C.T.R., P.J.T.); School of Nursing and Institute for Health Informatics, University of Minnesota, Minneapolis (C.-L.C.); and University of Wisconsin, Milwaukee (P.J.T.).

View Article

Download full-text PDF

Source
https://www.ahajournals.org/doi/10.1161/CIRCGENETICS.117.001
Publisher Site
http://dx.doi.org/10.1161/CIRCGENETICS.117.001804DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5734112PMC
December 2017

Big Data Cohort Extraction to Facilitate Machine Learning to Improve Statin Treatment.

West J Nurs Res 2017 Jan 22;39(1):42-62. Epub 2016 Oct 22.

1 University of Minnesota, Minneapolis, MN, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1177/0193945916673059DOI Listing
January 2017

MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants.

BMC Bioinformatics 2017 Jan 20;18(1):49. Epub 2017 Jan 20.

Center for Informatics Sciences, Nile University, Juhayna Square, Sheikh Zayed, Giza, Egypt.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/s12859-016-1454-2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5248509PMC
January 2017

Scalable and cost-effective NGS genotyping in the cloud.

BMC Med Genomics 2015 Oct 15;8:64. Epub 2015 Oct 15.

Department of Pediatrics and Psychiatry (by courtesy), Division of Systems Medicine & Program in Biomedical Informatics, Stanford University, Stanford, CA, 94305, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/content/pdf/10.1186%2Fs12920-015-01
Web Search
http://www.biomedcentral.com/1755-8794/8/64
Publisher Site
http://dx.doi.org/10.1186/s12920-015-0134-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608296PMC
October 2015

Histopathologic alterations associated with global gene expression due to chronic dietary TCDD exposure in juvenile zebrafish.

PLoS One 2014 2;9(7):e100910. Epub 2014 Jul 2.

Department of Biological Sciences, University of Wisconsin-Milwaukee, Lapham Hall, Milwaukee, Wisconsin, United States of America; School of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, Wisconsin, United States of America.

View Article

Download full-text PDF

Source
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0100910PLOS
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4079602PMC
February 2015

COSMOS: Python library for massively parallel workflows.

Bioinformatics 2014 Oct 30;30(20):2956-8. Epub 2014 Jun 30.

Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, Department of Pathology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA 02215, USA and Department of Biology, Mohammed V University-Agal, 4 Ibn Battouta Avenue, Rabat B.P:1014RP, Morocco Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, Department of Pathology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA 02215, USA and Department of Biology, Mohammed V University-Agal, 4 Ibn Battouta Avenue, Rabat B.P:1014RP, Morocco.

View Article

Download full-text PDF

Source
https://academic.oup.com/bioinformatics/article-lookup/doi/1
Publisher Site
http://dx.doi.org/10.1093/bioinformatics/btu385DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184253PMC
October 2014

Streaming support for data intensive cloud-based sequence analysis.

Biomed Res Int 2013 24;2013:791051. Epub 2013 Apr 24.

Center for Informatics Sciences, Nile University, Giza, Egypt.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1155/2013/791051DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3655485PMC
December 2013

Analysis of sequence-based copy number variation detection tools for cancer studies.

AMIA Jt Summits Transl Sci Proc 2013 18;2013:124. Epub 2013 Mar 18.

Center for Biomedical Informatics, Harvard Medical School.

View Article

Download full-text PDF

Source
December 2013

Ultradense array CGH and discovery of micro-copy number alterations and gene fusions in the cancer genome.

Methods Mol Biol 2013 ;973:15-38

Department of Oncology, Lady Davis Institute, Sir Mortimer B. Davis, Jewish General Hospital, McGill University, Montreal, QC, Canada.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/978-1-62703-281-0_2
Publisher Site
http://dx.doi.org/10.1007/978-1-62703-281-0_2DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3692353PMC
July 2013

Differential gene expression associated with dietary methylmercury (MeHg) exposure in rainbow trout (Oncorhynchus mykiss) and zebrafish (Danio rerio).

Ecotoxicology 2013 May 26;22(4):740-51. Epub 2013 Mar 26.

Department of Biological Sciences, University of Wisconsin-Milwaukee, Lapham Hall, 3209 N. Maryland Ave, Milwaukee, WI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1007/s10646-013-1066-9DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3664064PMC
May 2013

A systems approach to designing effective clinical trials using simulations.

Circulation 2013 Jan 21;127(4):517-26. Epub 2012 Dec 21.

Center for Biomedical Informatics Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1161/CIRCULATIONAHA.112.123034DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3747989PMC
January 2013

A simulation platform to examine heterogeneity influence on treatment.

AMIA Jt Summits Transl Sci Proc 2012 19;2012:19-24. Epub 2012 Mar 19.

Center for Biomedical Informatics, Harvard Medical School, Boston, MA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3392060PMC
August 2012

Deriving clinical action from whole-genome analysis.

Per Med 2012 May;9(3):247-252

Department of Pathology, Beth Israel Deaconess Medical Center & Center for Biomedical Informatics, Harvard Medical School, 10 Shattuck Street, Boston, MA 02115, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.2217/pme.12.32DOI Listing
May 2012

Systems analysis of inflammatory bowel disease based on comprehensive gene information.

BMC Med Genet 2012 Apr 5;13:25. Epub 2012 Apr 5.

Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2350-13-25DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368714PMC
April 2012

Biomedical cloud computing with Amazon Web Services.

PLoS Comput Biol 2011 Aug 25;7(8):e1002147. Epub 2011 Aug 25.

Center for Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1371/journal.pcbi.1002147DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3161908PMC
August 2011

Cost-effective cloud computing: a case study using the comparative genomics tool, roundup.

Evol Bioinform Online 2010 Dec 22;6:197-203. Epub 2010 Dec 22.

Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.4137/EBO.S6259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3023304PMC
December 2010

Genotator: a disease-agnostic tool for genetic annotation of disease.

BMC Med Genomics 2010 Oct 29;3:50. Epub 2010 Oct 29.

Center for Biomedical informatics, Harvard Medical School, Boston, MA 02115, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1755-8794-3-50DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2990725PMC
October 2010

Cloud computing for comparative genomics.

BMC Bioinformatics 2010 May 18;11:259. Epub 2010 May 18.

Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-11-259DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3098063PMC
May 2010

Using Comparative Genomics to Leverage Animal Models in the Identification of Cancer Genes. Examples in Prostate Cancer.

Cancer Genomics Proteomics 2005 May-Jun;2(3):137-144. Epub 2005 May 1.

Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, Wisconsin, U.S.A.

View Article

Download full-text PDF

Source
May 2005

Automated analysis of conserved syntenies for the zebrafish genome.

Methods Cell Biol 2004 ;77:255-71

Institute of Neuroscience, University of Oregon, Eugene, Oregon 97403, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1016/s0091-679x(04)77014-4DOI Listing
February 2005

Peptide identification using peptide amino acid attribute vectors.

J Proteome Res 2004 Jul-Aug;3(4):813-20

Bioinformatics Research Center, Medical College of Wisconsin, Milwaukee, Wisconsin 53213, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1021/pr0499444DOI Listing
January 2005

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Authors:
Richard A Gibbs George M Weinstock Michael L Metzker Donna M Muzny Erica J Sodergren Steven Scherer Graham Scott David Steffen Kim C Worley Paula E Burch Geoffrey Okwuonu Sandra Hines Lora Lewis Christine DeRamo Oliver Delgado Shannon Dugan-Rocha George Miner Margaret Morgan Alicia Hawes Rachel Gill Celera Robert A Holt Mark D Adams Peter G Amanatides Holly Baden-Tillson Mary Barnstead Soo Chin Cheryl A Evans Steve Ferriera Carl Fosler Anna Glodek Zhiping Gu Don Jennings Cheryl L Kraft Trixie Nguyen Cynthia M Pfannkoch Cynthia Sitter Granger G Sutton J Craig Venter Trevor Woodage Douglas Smith Hong-Mei Lee Erik Gustafson Patrick Cahill Arnold Kana Lynn Doucette-Stamm Keith Weinstock Kim Fechtel Robert B Weiss Diane M Dunn Eric D Green Robert W Blakesley Gerard G Bouffard Pieter J De Jong Kazutoyo Osoegawa Baoli Zhu Marco Marra Jacqueline Schein Ian Bosdet Chris Fjell Steven Jones Martin Krzywinski Carrie Mathewson Asim Siddiqui Natasja Wye John McPherson Shaying Zhao Claire M Fraser Jyoti Shetty Sofiya Shatsman Keita Geer Yixin Chen Sofyia Abramzon William C Nierman Paul H Havlak Rui Chen K James Durbin Amy Egan Yanru Ren Xing-Zhi Song Bingshan Li Yue Liu Xiang Qin Simon Cawley Kim C Worley A J Cooney Lisa M D'Souza Kirt Martin Jia Qian Wu Manuel L Gonzalez-Garay Andrew R Jackson Kenneth J Kalafus Michael P McLeod Aleksandar Milosavljevic Davinder Virk Andrei Volkov David A Wheeler Zhengdong Zhang Jeffrey A Bailey Evan E Eichler Eray Tuzun Ewan Birney Emmanuel Mongin Abel Ureta-Vidal Cara Woodwark Evgeny Zdobnov Peer Bork Mikita Suyama David Torrents Marina Alexandersson Barbara J Trask Janet M Young Hui Huang Huajun Wang Heming Xing Sue Daniels Darryl Gietzen Jeanette Schmidt Kristian Stevens Ursula Vitt Jim Wingrove Francisco Camara M Mar Albà Josep F Abril Roderic Guigo Arian Smit Inna Dubchak Edward M Rubin Olivier Couronne Alexander Poliakov Norbert Hübner Detlev Ganten Claudia Goesele Oliver Hummel Thomas Kreitler Young-Ae Lee Jan Monti Herbert Schulz Heike Zimdahl Heinz Himmelbauer Hans Lehrach Howard J Jacob Susan Bromberg Jo Gullings-Handley Michael I Jensen-Seaman Anne E Kwitek Jozef Lazar Dean Pasko Peter J Tonellato Simon Twigger Chris P Ponting Jose M Duarte Stephen Rice Leo Goodstadt Scott A Beatson Richard D Emes Eitan E Winter Caleb Webber Petra Brandt Gerald Nyakatura Margaret Adetobi Francesca Chiaromonte Laura Elnitski Pallavi Eswara Ross C Hardison Minmei Hou Diana Kolbe Kateryna Makova Webb Miller Anton Nekrutenko Cathy Riemer Scott Schwartz James Taylor Shan Yang Yi Zhang Klaus Lindpaintner T Dan Andrews Mario Caccamo Michele Clamp Laura Clarke Valerie Curwen Richard Durbin Eduardo Eyras Stephen M Searle Gregory M Cooper Serafim Batzoglou Michael Brudno Arend Sidow Eric A Stone J Craig Venter Bret A Payseur Guillaume Bourque Carlos López-Otín Xose S Puente Kushal Chakrabarti Sourav Chatterji Colin Dewey Lior Pachter Nicolas Bray Von Bing Yap Anat Caspi Glenn Tesler Pavel A Pevzner David Haussler Krishna M Roskin Robert Baertsch Hiram Clawson Terrence S Furey Angie S Hinrichs Donna Karolchik William J Kent Kate R Rosenbloom Heather Trumbower Matt Weirauch David N Cooper Peter D Stenson Bin Ma Michael Brent Manimozhiyan Arumugam David Shteynberg Richard R Copley Martin S Taylor Harold Riethman Uma Mudunuri Jane Peterson Mark Guyer Adam Felsenfeld Susan Old Stephen Mockrin Francis Collins

Nature 2004 Apr;428(6982):493-521

Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, MS BCM226, One Baylor Plaza, Houston, Texas 77030, USA. http://www.hgsc.bcm.tmc.edu

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1038/nature02426DOI Listing
April 2004

ChromSorter PC: a database of chromosomal regions associated with human prostate cancer.

BMC Genomics 2004 Apr 28;5(1):27. Epub 2004 Apr 28.

Department of Pathology, Human and Molecular Genetics Center, Medical College of Wisconsin, Milwaukee, WI 53226, USA.

View Article

Download full-text PDF

Source
http://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2
Publisher Site
http://dx.doi.org/10.1186/1471-2164-5-27DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC416659PMC
April 2004

B.E.A.R. GeneInfo: a tool for identifying gene-related biomedical publications through user modifiable queries.

BMC Bioinformatics 2004 Apr 29;5:46. Epub 2004 Apr 29.

Department of Pathology and Bioinformatics Program, Medical College of Wisconsin, Milwaukee, WI, 53226, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1186/1471-2105-5-46DOI Listing
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC419696PMC
April 2004

A novel approach for high-quality microarray processing using third-dye array visualization technology.

IEEE Trans Nanobioscience 2003 Dec;2(4):193-201

Max McGee National Research Center for Juvenile Diabetes, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI 53226, USA.

View Article

Download full-text PDF

Source
http://ieeexplore.ieee.org/iel5/7728/28066/01254522.pdf
Web Search
http://dx.doi.org/10.1109/tnb.2003.816233DOI Listing
December 2003

Genomic map of cardiovascular phenotypes of hypertension in female Dahl S rats.

Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Nov 11.

Department of Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin 53226-0509, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1152/physiolgenomics.00105.2003DOI Listing
November 2003

Evolutionary dynamics of oncogenes and tumor suppressor genes: higher intensities of purifying selection than other genes.

Mol Biol Evol 2003 Jun 25;20(6):964-8. Epub 2003 Apr 25.

Bioinformatics Research Center, Medical College of Wisconsin, Milwaukee, WI, USA.

View Article

Download full-text PDF

Source
http://dx.doi.org/10.1093/molbev/msg110DOI Listing
June 2003

Phylogenetics of rat inbred strains.

Mamm Genome 2003 Jan;14(1):61-4

Bioinformatics Research Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, Wisconsin 53226, USA.

View Article

Download full-text PDF

Source
http://link.springer.com/10.1007/s00335-002-2204-5
Publisher Site
http://dx.doi.org/10.1007/s00335-002-2204-5DOI Listing
January 2003

Rat Genome Database (RGD): mapping disease onto the genome.

Nucleic Acids Res 2002 Jan;30(1):125-8

Bioinformatics Research Center and Human and Molecular Genetics Center, Medical College of Wisconsin, 8701 Watertown Plank Road, Milwaukee, WI 53226, USA.

View Article

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC99132PMC
http://dx.doi.org/10.1093/nar/30.1.125DOI Listing
January 2002